RLG00000002527

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
35763379 .. 35764866
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002527

Sequence Viewer

Length: 573 bp
ATGCTCGTAAGACTTCATTCAAGTCCTCAACTCGCCTCATCGGTGACGAGCATGGTGGAGAGGACTGCTTCGGTGACGGTTCCAGCGACAGGGACAAAGAAATCATCTCTGTCTCCCCTCCCAGCCTTTATCTGCAACCAGTTCTCCGTCGTGGATGTCGGCGATGGGGTAGGTGCACCTGATGGGAACTTCGAGGATGAGGCCAAAGGTAAGGTTTCAGTTGCCAAAGGGGTTCTGATGCATGAAGGGCTAACAGGTGGTGAGGCCCTGGTCGGTGTTGTCGGCGACGCCAATGTAGGTGTCAGCGGTGGTCTTGAGGGTGTAGGAGGCATTGTCGGAGCAGGAGTAGTTGACGGGGACGAGGACGAGGGTGTTGATGGGGATGGGGTAGACGTCAGATATGTTGTTGGCGGAGGTGATGTCGGAAAGGATGGAGCCGAGGAGGTAGGCGATGGAGGTGGGGAAGTTGTGGAGAGGGTCGATAGAGCAGAAAGTGAGGTAGGAGATGAAAGAGGGGTCGGGGTCGTTGCAAATGTAGCTGTTGGTGGAGTTGTAGTTGTTGTAGCAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

18.57

Weight (kDa)

4.16

Isoelectric Point (pI)

16.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 390
AciI CCGC 2 cut(s) 306, 411
AcyI GRCGYC 2 cut(s) 288, 393
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 21
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 1 cut(s) 539
AluI AGCT 1 cut(s) 539
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 117
Alw44I GTGCAC 1 cut(s) 174
AoxI GGCC 2 cut(s) 201, 264
ApaLI GTGCAC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 265
AsuHPI GGTGA 4 cut(s) 55, 85, 272, 428
BaeGI GKGCMC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 6 cut(s) 158, 176, 371, 377, 425, 446
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 117
BfaI CTAG 1 cut(s) 571
Bme1390I CCNGG 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 81, 436
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 288, 393
BsaJI CCNNGG 2 cut(s) 267, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 267, 438
BseGI GGATG 4 cut(s) 160, 202, 388, 436
BseLI CCNNNNNNNGG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 455
BseSI GKGCMC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 121
BshFI GGCC 2 cut(s) 203, 266
BsiHKAI GWGCWC 1 cut(s) 178
BslFI GGGAC 2 cut(s) 106, 371
BslI CCNNNNNNNGG 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 2 cut(s) 106, 371
BsnI GGCC 2 cut(s) 203, 266
Bsp1286I GDGCHC 1 cut(s) 178
BspACI CCGC 2 cut(s) 306, 411
BspANI GGCC 2 cut(s) 203, 266
BspLI GGNNCC 2 cut(s) 81, 436
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 267, 438
BssNI GRCGYC 2 cut(s) 288, 393
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 79
BstACI GRCGYC 2 cut(s) 288, 393
BstF5I GGATG 4 cut(s) 160, 202, 388, 436
BstMAI GTCTC 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 247, 536
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSLI GKGCMC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 203, 266
BtgZI GCGATG 2 cut(s) 177, 465
BtsCI GGATG 4 cut(s) 160, 202, 388, 436
Cfr13I GGNCC 1 cut(s) 265
CseI GACGC 1 cut(s) 296
CviAII CATG 2 cut(s) 52, 242
CviJI RGCY 6 cut(s) 125, 203, 250, 266, 437, 539
CviKI_1 RGCY 6 cut(s) 125, 203, 250, 266, 437, 539
EciI GGCGGA 1 cut(s) 426
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 243
FaeI CATG 2 cut(s) 55, 245
FaiI YATR 3 cut(s) 53, 243, 402
FaqI GGGAC 2 cut(s) 106, 371
FatI CATG 2 cut(s) 51, 241
FblI GTMKAC 1 cut(s) 390
FokI GGATG 4 cut(s) 167, 209, 395, 443
FspBI CTAG 1 cut(s) 571
GsaI CCCAGC 1 cut(s) 125
HaeIII GGCC 2 cut(s) 203, 266
HgaI GACGC 1 cut(s) 296
Hin1I GRCGYC 2 cut(s) 288, 393
Hin1II CATG 2 cut(s) 55, 245
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HphI GGTGA 4 cut(s) 55, 85, 272, 428
Hpy166II GTNNAC 3 cut(s) 176, 352, 391
Hpy188I TCNGA 4 cut(s) 237, 338, 398, 425
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 3 cut(s) 176, 352, 391
Hpy99I CGWCG 2 cut(s) 152, 290
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 4 cut(s) 135, 176, 241, 530
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 536
HpySE526I ACGT 1 cut(s) 393
Hsp92I GRCGYC 2 cut(s) 288, 393
Hsp92II CATG 2 cut(s) 55, 245
LmnI GCTCC 2 cut(s) 338, 434
LpnPI CCDG 9 cut(s) 75, 96, 135, 152, 192, 240, 254, 281, 327
LweI GCATC 1 cut(s) 228
MaeI CTAG 1 cut(s) 571
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 43, 73
MhlI GDGCHC 1 cut(s) 178
MmeI TCCRAC 2 cut(s) 316, 403
Mph1103I ATGCAT 1 cut(s) 243
MspA1I CMGCKG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 247, 536
NlaIII CATG 2 cut(s) 55, 245
NlaIV GGNNCC 2 cut(s) 81, 436
NmeAIII GCCGAG 1 cut(s) 463
NmuCI GTSAC 2 cut(s) 43, 73
NsiI ATGCAT 1 cut(s) 243
PcsI WCGNNNNNNNCGW 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 267
PspFI CCCAGC 1 cut(s) 121
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 81, 436
PspPI GGNCC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 1 cut(s) 178
SfaNI GCATC 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SsiI CCGC 2 cut(s) 306, 411
SspMI CTAG 1 cut(s) 571
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 79
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 192, 480
TseFI GTSAC 2 cut(s) 43, 73
Tsp45I GTSAC 2 cut(s) 43, 73
TspDTI ATGAA 3 cut(s) 5, 258, 522
TspGWI ACGGA 1 cut(s) 136
VneI GTGCAC 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 390
XspI CTAG 1 cut(s) 571
ZraI GACGTC 1 cut(s) 394
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.