Rw3G025930

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000165
Physical Location & Seq
Forward (+)
35044320 .. 35048617
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025930.1

Sequence Viewer

Length: 708 bp
ATGGAACACAATAATTGTGGAAAATTGGACCTCCAAATATTTATGGAGAAATTCTTCTATCCTACGGTAGAACCACTAAGTAACGTAGAAGATGATGAAGAACACAACAAGACAATTGATTTGGGAAAAGATTCAATGATTGTGAATCGTCAAGCTAGTAATAATGACAACTTGTATGGAGTAATTGTCAACAGTGAGGAAGAAGCATACAACCTATACTGTGAGTATGGTGCTAGAATGGGGTTTAGTGTTCGGATAATGCAGAGGAGGAAAACCAACAACGTTGTGAGACAAGTTAATTATGCCTATTCAAAAGAAGGTTTTAAACTAGATAGTGATCCTTCAGAAGTGAAAAAGGCTGATAGGTTGGACACTAGAACTGGCCGCACAGCAAAAATTCGATTTGGATTGCAAGATAATAATGTATGGAAAGCAACTCTCTTTGTTCCTGAACACAACCTACTTGCCAAGCCAGAAGGAAGACCATTTTTGCGCTTCAATCGAAAAGTGTTAGAATCTCATAAGGGGGTGATTAGATCAATGAAAAGCGCAGGTATGAGTACCATAAATACATATTCATATTTAGCAGAAGAAGTTGGGGGATCTCAAAATGTTGATTTACAAAGACTAATTGTTACAATTTTAAAAAGAAAATTGAAGATCCTATATTTTTCTACACCGTGCAAGTGGATCAAGAAAATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

235

Amino Acids

27.2

Weight (kDa)

9.19

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 72 - 153 1.6e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 542
AciI CCGC 1 cut(s) 385
AclI AACGTT 1 cut(s) 282
AclWI GGATC 4 cut(s) 332, 610, 655, 698
AcoI YGGCCR 1 cut(s) 382
AcsI RAATTY 2 cut(s) 50, 396
AcuI CTGAAG 1 cut(s) 327
AfaI GTAC 1 cut(s) 562
AgsI TTSAA 4 cut(s) 135, 312, 499, 658
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 4 cut(s) 332, 610, 655, 698
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 50, 396
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
Asp700I GAANNNNTTC 2 cut(s) 53, 130
AspLEI GCGC 2 cut(s) 495, 551
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 541
AvaII GGWCC 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 4 cut(s) 156, 234, 329, 375
BfuAI ACCTGC 1 cut(s) 542
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 487
BsaBI GATNNNNATC 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bse1I ACTGG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 336
BseJI GATNNNNATC 1 cut(s) 336
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 280
BshFI GGCC 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 1 cut(s) 384
Bsp143I GATC 5 cut(s) 337, 536, 602, 660, 690
BspACI CCGC 1 cut(s) 385
BspANI GGCC 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 542
BspPI GGATC 4 cut(s) 332, 610, 655, 698
BsrI ACTGG 1 cut(s) 385
BssMI GATC 5 cut(s) 337, 536, 602, 660, 690
Bst4CI ACNGT 4 cut(s) 67, 194, 221, 681
BstDEI CTNAG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 495, 551
BstKTI GATC 5 cut(s) 340, 539, 605, 663, 693
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 5 cut(s) 337, 536, 602, 660, 690
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 2 cut(s) 602, 660
BstYI RGATCY 2 cut(s) 602, 660
BsuRI GGCC 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 1 cut(s) 542
CfoI GCGC 2 cut(s) 495, 551
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 561
CspCI CAANNNNNGTGG 1 cut(s) 33
CviJI RGCY 4 cut(s) 155, 359, 384, 472
CviKI_1 RGCY 4 cut(s) 155, 359, 384, 472
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 339, 538, 604, 662, 692
DpnII GATC 5 cut(s) 337, 536, 602, 660, 690
DraI TTTAAA 2 cut(s) 325, 645
EaeI YGGCCR 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 4 cut(s) 156, 234, 329, 375
GlaI GCGC 2 cut(s) 494, 550
GluI GCNGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 384
HhaI GCGC 2 cut(s) 495, 551
Hin6I GCGC 2 cut(s) 493, 549
HinP1I GCGC 2 cut(s) 493, 549
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 3 cut(s) 131, 145, 515
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 255, 346
Hpy188III TCNNGA 2 cut(s) 449, 694
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 311, 351, 470
HpyCH4III ACNGT 4 cut(s) 67, 194, 221, 681
HpyCH4IV ACGT 2 cut(s) 84, 282
HpyCH4V TGCA 3 cut(s) 262, 412, 684
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 2 cut(s) 84, 282
HspAI GCGC 2 cut(s) 493, 549
Kzo9I GATC 5 cut(s) 337, 536, 602, 660, 690
LpnPI CCDG 4 cut(s) 366, 462, 486, 537
MaeI CTAG 4 cut(s) 156, 234, 329, 375
MaeII ACGT 2 cut(s) 84, 282
MaeIII GTNAC 2 cut(s) 80, 634
MalI GATC 5 cut(s) 339, 538, 604, 662, 692
MboI GATC 5 cut(s) 337, 536, 602, 660, 690
MboII GAAGA 7 cut(s) 46, 101, 110, 212, 492, 602, 670
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 2 cut(s) 602, 660
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 4 cut(s) 41, 190, 258, 261
MroXI GAANNNNTTC 2 cut(s) 53, 130
MseI TTAA 3 cut(s) 297, 324, 644
MunI CAATTG 1 cut(s) 114
NdeII GATC 5 cut(s) 337, 536, 602, 660, 690
PdmI GAANNNNTTC 2 cut(s) 53, 130
PfeI GAWTC 3 cut(s) 131, 145, 515
PkrI GCNGC 1 cut(s) 386
Psp1406I AACGTT 1 cut(s) 282
PspPI GGNCC 1 cut(s) 28
PsrI GAACNNNNNNTAC 2 cut(s) 444, 476
PsuI RGATCY 2 cut(s) 602, 660
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
SaqAI TTAA 3 cut(s) 297, 324, 644
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 5 cut(s) 337, 536, 602, 660, 690
Sau96I GGNCC 1 cut(s) 28
SetI ASST 9 cut(s) 33, 87, 157, 216, 285, 322, 368, 462, 556
SinI GGWCC 1 cut(s) 28
SsiI CCGC 1 cut(s) 385
SspI AATATT 1 cut(s) 39
SspMI CTAG 4 cut(s) 156, 234, 329, 375
TaaI ACNGT 4 cut(s) 67, 194, 221, 681
TaiI ACGT 2 cut(s) 87, 285
TaqI TCGA 3 cut(s) 400, 502, 702
TauI GCSGC 1 cut(s) 387
TfiI GAWTC 3 cut(s) 131, 145, 515
Tru1I TTAA 3 cut(s) 297, 324, 644
Tru9I TTAA 3 cut(s) 297, 324, 644
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 111, 557, 567
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 2 cut(s) 50, 396
XmnI GAANNNNTTC 2 cut(s) 53, 130
XspI CTAG 4 cut(s) 156, 234, 329, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.