FvH4_6g38410

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000165
Physical Location & Seq
Reverse (-)
30355532 .. 30363048
7517 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38410.t1

Sequence Viewer

Length: 2073 bp
ATGGAGGAAATAATTGAAGACGATGAAGAACTCAAAGTGGGAACTCAAGTACACTCAGATGAGGAGGCTTACAATTTATATAATACCTATGCTTTGAGGAAGGGTTTCAGTGTTCGTAAGTCACATATTAGAAGAGATGCATCAAATAACATCCGGTTACGAGAGTTTGTATGTTCAAAGGAAGGGTTTGCACAAGACCAAGATGTGTTTGAACCAACCAAACATAGGAAGTTGGAAACAAGAGTCGGTTGCAAGGCTATGATATCGTTTATTGTGAAAGATGGGATATGGACAATATCACATATCAATTCAGATCATAACCATGAGCTTGCAAACCCTGAAGAAAGGCAATTTTTGAGATCTGGGCGAAAAGTAACAGATGCTTGTGGACAAGTTTTATGGGATAACTTGATTGGTAGATATAATCTCGGAAATAATCCTTGGCTAGCAAAGTTGTATTCACTCCGACAGAAGTGGTGTGCAGCATTTAATTTGGACACTTTTTCGGCAAGGATTAGATCTACTCAAAGGAGTGAAAGTACAAACAATGTGTTCCAAGGAATTTCTACACACACAATGGAGCTTATTAAATTTGTTCATCACTATAAGAAAAAGATTGAAGAGTTGCGTTTAACAGAGTTAGAAGATGACTACCGTAGCAAAAATGGTGCACGTCGTCCAAAAGTATGGACTAAGATGTTAAGCAGTGCTGCCAAGGTTTATACTAACAAAATTTTTCAGTTTTTTGAAACAGAATTCTATAGTTGTATGGGAGTTAGACTAAAAGAAGTTTCCAGTAAAGATCAAGTTTATGTATATGAAGCAATTGAAGATGGTCGTGAAAGTGTGCACAAGATTGAATACAACTCTACATCCTTGAGCATATCTTGTTCTTGTAAGTCATTTAAGTCTGTTGGGATCTTGTGTCGTCATGCTTTGAAGGTGTTTGATACAAATAATATCACAACTTTACCAACTCAGTATATATTGAAGAGGTGGACTAAAGAGGCAAAGAAAGGGCATTTGTTAACAGAGGCAATGAAGCGTCTTGAAAAAGACAAGGACACCCTTTACGTGTTGGAAAATCTGAAGAATTTTGGTGCTGAGTCTGGCTCTACCATTTCTAGTAATGAGACACTAGTTTTGAACCCACCAAATGCAAAGACTAAGGGAATGAAAAATAGTAGAATCAAAGATGTGATGGAGACAAATCAAAGGAAGAAGAGAACAAAAGAACAAGAAAACCAAGAAAATAATGATCCAAAAGCTCCAACTGATGTGTCTACATTCAATAATCATCGGTTTGTAGTACCTAACATCCCAACATTCTGTAATCAGTATGGAGTACCTAACATCCCAACAGTGAGTAATCAGTTTGGAGTACCCAACACCCCAACATTCAGTAATCAGGGAAATTTAAGTTGGCCTTTTGAGCATCCTCATTCACATGTTAGTTATGGTCAGATGCCTTTCTCAAACCAGAGGGTTAACCAATGTCTTCAAGACGCCTGCCACAATTCTAATATGCAGTCATGCCCGAACTTAATAGATTGTTGGCATGCTCGTTATCTTTCCCTGGATGAGTTAATTACTAAACGGAGACTAAATGAGAAGGCTGCTCTTTGTTTTAGTCCCAATGGAGACTTCTCATATGGAATCTATGCGCCAATTATCAATATCACTACGGGACATATCATTACTAAATATCTATACTCATTGTTTTGGGGGTTTCAGCAAATCAGCACTTTGGGAGGAAATCTAACTCCAAGCTATAACAATGGTGAAATTATCTTTACGATGGTAATTATTGGACTGGGACTCTTCCTCCTTGCTCTTCTGATCGGAAACATGCAAAATTTTCTCCAGTCTCTTGGACAAAGGAGGTCTGATATGTTGATGAGGAGGCGTGATGTTGAGGCGTGGATGAGGTACAGAAACTTGCCTGAAGAGTTTAGAAGGCAAGTGAGAAATGCCGAACAATATTCTGCCACGGATGTAAATGAAGAACGTATTTTGGAAAATTTGCCTGACGAGCTTCAGATAAATATAAGACGCCACTTCTTCGGTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

691

Amino Acids

79.93

Weight (kDa)

8.93

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 26 - 111 1.2e-20 FAR1 DNA-binding domain
SWIM PF04434 295 - 316 6e-06 SWIM zinc finger
Ion_trans PF00520 567 - 628 6.3e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1283
AclWI GGATC 2 cut(s) 926, 1253
AcsI RAATTY 8 cut(s) 561, 590, 732, 755, 1093, 1414, 1855, 2020
AcuI CTGAAG 4 cut(s) 360, 1109, 1965, 2021
AcyI GRCGYC 2 cut(s) 1506, 2053
AfaI GTAC 6 cut(s) 51, 541, 1311, 1347, 1383, 1931
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 2 cut(s) 1074, 1447
AhlI ACTAGT 1 cut(s) 1138
AjiI CACGTC 1 cut(s) 674
AjnI CCWGG 1 cut(s) 1575
AjuI GAANNNNNNNTTGG 6 cut(s) 424, 456, 1405, 1437, 1628, 1660
AluBI AGCT 5 cut(s) 328, 583, 1268, 1770, 2035
AluI AGCT 5 cut(s) 328, 583, 1268, 1770, 2035
Alw21I GWGCWC 2 cut(s) 673, 852
Alw26I GTCTC 5 cut(s) 1127, 1199, 1594, 1635, 1872
Alw44I GTGCAC 2 cut(s) 669, 848
AlwI GGATC 2 cut(s) 926, 1253
AoxI GGCC 1 cut(s) 1424
ApaLI GTGCAC 2 cut(s) 669, 848
ApeKI GCWGC 3 cut(s) 482, 710, 1616
ApoI RAATTY 8 cut(s) 561, 590, 732, 755, 1093, 1414, 1855, 2020
ArsI GACNNNNNNTTYG 2 cut(s) 1126, 1158
Asp700I GAANNNNTTC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 1666
AsuHPI GGTGA 1 cut(s) 1793
AsuNHI GCTAGC 1 cut(s) 445
BaeGI GKGCMC 2 cut(s) 673, 852
BbsI GAAGAC 2 cut(s) 24, 1490
Bbv12I GWGCWC 2 cut(s) 673, 852
BbvI GCAGC 3 cut(s) 494, 697, 1603
BccI CCATC 4 cut(s) 275, 827, 1195, 1792
BciT130I CCWGG 1 cut(s) 1577
BcoDI GTCTC 5 cut(s) 1127, 1199, 1594, 1635, 1872
BcuI ACTAGT 1 cut(s) 1138
BfaI CTAG 4 cut(s) 446, 1125, 1139, 2071
BfmI CTRYAG 1 cut(s) 760
BglII AGATCT 2 cut(s) 359, 518
BisI GCNGC 3 cut(s) 483, 711, 1617
BlsI GCNGC 3 cut(s) 484, 712, 1618
Bme1390I CCNGG 1 cut(s) 1577
BmgBI CACGTC 1 cut(s) 674
BmrFI CCNGG 1 cut(s) 1577
BmrI ACTGGG 1 cut(s) 1823
BmsI GCATC 5 cut(s) 127, 149, 370, 1444, 1455
BmtI GCTAGC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 1823
BpiI GAAGAC 2 cut(s) 24, 1490
BplI GAGNNNNNCTC 2 cut(s) 1097, 1129
BpmI CTGGAG 1 cut(s) 1847
BpuEI CTTGAG 2 cut(s) 30, 898
BsaAI YACGTR 1 cut(s) 1075
BsaHI GRCGYC 2 cut(s) 1506, 2053
BsaJI CCNNGG 5 cut(s) 440, 556, 714, 1575, 1989
BsaWI WCCGGW 1 cut(s) 153
BsaXI ACNNNNNCTCC 4 cut(s) 523, 553, 1809, 1839
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 3 cut(s) 795, 1818, 1864
Bse3DI GCAATG 1 cut(s) 1044
BseBI CCWGG 1 cut(s) 1577
BseDI CCNNGG 5 cut(s) 440, 556, 714, 1575, 1989
BseGI GGATG 8 cut(s) 150, 872, 1317, 1353, 1435, 1585, 1929, 1999
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 1044
BseMII CTCAG 3 cut(s) 69, 992, 1095
BseNI ACTGG 3 cut(s) 795, 1818, 1864
BseRI GAGGAG 2 cut(s) 77, 1915
BseSI GKGCMC 2 cut(s) 673, 852
BseXI GCAGC 3 cut(s) 494, 697, 1603
BsgI GTGCAG 1 cut(s) 501
BshFI GGCC 1 cut(s) 1426
BsiHKAI GWGCWC 2 cut(s) 673, 852
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 3 cut(s) 1617, 1701, 1830
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 5 cut(s) 1127, 1199, 1594, 1635, 1872
BsmFI GGGAC 3 cut(s) 1617, 1701, 1830
BsnI GGCC 1 cut(s) 1426
Bsp1286I GDGCHC 2 cut(s) 673, 852
Bsp143I GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
BspANI GGCC 1 cut(s) 1426
BspCNI CTCAG 3 cut(s) 68, 991, 1096
BspOI GCTAGC 1 cut(s) 449
BspPI GGATC 2 cut(s) 926, 1253
BspQI GCTCTTC 1 cut(s) 1839
BsrDI GCAATG 1 cut(s) 1044
BsrI ACTGG 3 cut(s) 795, 1818, 1864
BssECI CCNNGG 5 cut(s) 440, 556, 714, 1575, 1989
BssMI GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
BssNI GRCGYC 2 cut(s) 1506, 2053
BssT1I CCWWGG 3 cut(s) 440, 556, 714
Bst2UI CCWGG 1 cut(s) 1577
Bst4CI ACNGT 2 cut(s) 656, 1363
Bst6I CTCTTC 7 cut(s) 127, 615, 986, 1217, 1826, 1839, 1941
BstACI GRCGYC 2 cut(s) 1506, 2053
BstBAI YACGTR 1 cut(s) 1075
BstC8I GCNNGC 4 cut(s) 330, 447, 1510, 1560
BstDEI CTNAG 5 cut(s) 55, 693, 978, 1104, 1167
BstDSI CCRYGG 1 cut(s) 1989
BstF5I GGATG 8 cut(s) 150, 872, 1317, 1353, 1435, 1585, 1929, 1999
BstHHI GCGC 1 cut(s) 1666
BstKTI GATC 7 cut(s) 316, 362, 521, 805, 921, 1261, 1842
BstMAI GTCTC 5 cut(s) 1127, 1199, 1594, 1635, 1872
BstMBI GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
BstMWI GCNNNNNNNGC 2 cut(s) 1432, 2032
BstNI CCWGG 1 cut(s) 1577
BstNSI RCATGY 3 cut(s) 1451, 1562, 1852
BstSCI CCNGG 1 cut(s) 1575
BstSFI CTRYAG 1 cut(s) 760
BstSLI GKGCMC 2 cut(s) 673, 852
BstV1I GCAGC 3 cut(s) 494, 697, 1603
BstV2I GAAGAC 2 cut(s) 24, 1490
BstX2I RGATCY 3 cut(s) 359, 518, 918
BstXI CCANNNNNNTGG 2 cut(s) 687, 1871
BstYI RGATCY 3 cut(s) 359, 518, 918
BsuRI GGCC 1 cut(s) 1426
BtgI CCRYGG 1 cut(s) 1989
BtrI CACGTC 1 cut(s) 674
BtsCI GGATG 8 cut(s) 150, 872, 1317, 1353, 1435, 1585, 1929, 1999
BtsI GCAGTG 1 cut(s) 712
BtsIMutI CAGTG 3 cut(s) 115, 712, 1368
Cac8I GCNNGC 4 cut(s) 330, 447, 1510, 1560
CfoI GCGC 1 cut(s) 1666
CseI GACGC 3 cut(s) 1034, 1514, 2061
Csp6I GTAC 6 cut(s) 50, 540, 1310, 1346, 1382, 1930
CviAII CATG 6 cut(s) 323, 932, 1448, 1533, 1559, 1849
CviQI GTAC 6 cut(s) 50, 540, 1310, 1346, 1382, 1930
DdeI CTNAG 5 cut(s) 55, 693, 978, 1104, 1167
DpnI GATC 7 cut(s) 315, 361, 520, 804, 920, 1260, 1841
DpnII GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
Eam1104I CTCTTC 7 cut(s) 127, 615, 986, 1217, 1826, 1839, 1941
EarI CTCTTC 7 cut(s) 127, 615, 986, 1217, 1826, 1839, 1941
Eco130I CCWWGG 3 cut(s) 440, 556, 714
Eco32I GATATC 1 cut(s) 264
Eco57I CTGAAG 4 cut(s) 360, 1109, 1965, 2021
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 1575
EcoRV GATATC 1 cut(s) 264
EcoT14I CCWWGG 3 cut(s) 440, 556, 714
EcoT22I ATGCAT 1 cut(s) 142
ErhI CCWWGG 3 cut(s) 440, 556, 714
FaeI CATG 6 cut(s) 326, 935, 1451, 1536, 1562, 1852
FalI AAGNNNNNCTT 2 cut(s) 1411, 1443
FaqI GGGAC 3 cut(s) 1617, 1701, 1830
FatI CATG 6 cut(s) 322, 931, 1447, 1532, 1558, 1848
FauNDI CATATG 1 cut(s) 1651
FblI GTMKAC 1 cut(s) 1283
Fnu4HI GCNGC 3 cut(s) 483, 711, 1617
FokI GGATG 8 cut(s) 137, 859, 1304, 1340, 1422, 1592, 1936, 2006
Fsp4HI GCNGC 3 cut(s) 483, 711, 1617
FspBI CTAG 4 cut(s) 446, 1125, 1139, 2071
GlaI GCGC 1 cut(s) 1665
GluI GCNGC 3 cut(s) 483, 711, 1617
GsuI CTGGAG 1 cut(s) 1847
HaeIII GGCC 1 cut(s) 1426
HapII CCGG 1 cut(s) 154
HgaI GACGC 3 cut(s) 1034, 1514, 2061
HhaI GCGC 1 cut(s) 1666
Hin1I GRCGYC 2 cut(s) 1506, 2053
Hin1II CATG 6 cut(s) 326, 935, 1451, 1536, 1562, 1852
Hin6I GCGC 1 cut(s) 1664
HinP1I GCGC 1 cut(s) 1664
HincII GTYRAC 2 cut(s) 1029, 1489
HindII GTYRAC 2 cut(s) 1029, 1489
HinfI GANTC 5 cut(s) 243, 1106, 1188, 1656, 1818
HpaI GTTAAC 2 cut(s) 1029, 1489
HpaII CCGG 1 cut(s) 154
HphI GGTGA 1 cut(s) 1793
Hpy166II GTNNAC 8 cut(s) 52, 389, 671, 850, 999, 1029, 1284, 1489
Hpy188III TCNNGA 3 cut(s) 839, 1049, 1502
Hpy8I GTNNAC 8 cut(s) 52, 389, 671, 850, 999, 1029, 1284, 1489
Hpy99I CGWCG 1 cut(s) 678
HpyAV CCTTC 5 cut(s) 94, 176, 934, 1606, 1950
HpyCH4III ACNGT 2 cut(s) 656, 1363
HpyCH4IV ACGT 3 cut(s) 673, 1074, 2008
HpyF10VI GCNNNNNNNGC 2 cut(s) 1432, 2032
HpyF3I CTNAG 5 cut(s) 55, 693, 978, 1104, 1167
HpySE526I ACGT 3 cut(s) 673, 1074, 2008
Hsp92I GRCGYC 2 cut(s) 1506, 2053
Hsp92II CATG 6 cut(s) 326, 935, 1451, 1536, 1562, 1852
HspAI GCGC 1 cut(s) 1664
KspAI GTTAAC 2 cut(s) 1029, 1489
Kzo9I GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
LguI GCTCTTC 1 cut(s) 1839
LmnI GCTCC 2 cut(s) 580, 1273
Lsp1109I GCAGC 3 cut(s) 494, 697, 1603
LweI GCATC 5 cut(s) 127, 149, 370, 1444, 1455
MaeI CTAG 4 cut(s) 446, 1125, 1139, 2071
MaeII ACGT 3 cut(s) 673, 1074, 2008
MaeIII GTNAC 4 cut(s) 120, 156, 373, 2066
MalI GATC 7 cut(s) 315, 361, 520, 804, 920, 1260, 1841
MboI GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 3 cut(s) 359, 518, 918
MhlI GDGCHC 2 cut(s) 673, 852
MlyI GAGTC 3 cut(s) 252, 1115, 1812
MmeI TCCRAC 4 cut(s) 213, 490, 1059, 1295
Mph1103I ATGCAT 1 cut(s) 142
MroXI GAANNNNTTC 1 cut(s) 104
MslI CAYNNNNRTG 3 cut(s) 57, 321, 1446
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 1 cut(s) 1577
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 1 cut(s) 1577
MwoI GCNNNNNNNGC 2 cut(s) 1432, 2032
NdeI CATATG 1 cut(s) 1651
NdeII GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
NheI GCTAGC 1 cut(s) 445
NlaIII CATG 6 cut(s) 326, 935, 1451, 1536, 1562, 1852
NmuCI GTSAC 1 cut(s) 120
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 3 cut(s) 1451, 1562, 1852
PaeI GCATGC 1 cut(s) 1562
PciI ACATGT 1 cut(s) 1447
PciSI GCTCTTC 1 cut(s) 1839
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 1188, 1656
PkrI GCNGC 3 cut(s) 484, 712, 1618
PleI GAGTC 3 cut(s) 251, 1114, 1812
PpsI GAGTC 3 cut(s) 251, 1114, 1812
Ppu21I YACGTR 1 cut(s) 1075
PscI ACATGT 1 cut(s) 1447
Psp6I CCWGG 1 cut(s) 1575
PspGI CCWGG 1 cut(s) 1575
PsuI RGATCY 3 cut(s) 359, 518, 918
RsaI GTAC 6 cut(s) 51, 541, 1311, 1347, 1383, 1931
RsaNI GTAC 6 cut(s) 50, 540, 1310, 1346, 1382, 1930
RseI CAYNNNNRTG 3 cut(s) 57, 321, 1446
SapI GCTCTTC 1 cut(s) 1839
SatI GCNGC 3 cut(s) 483, 711, 1617
Sau3AI GATC 7 cut(s) 313, 359, 518, 802, 918, 1258, 1839
SchI GAGTC 3 cut(s) 252, 1115, 1812
ScrFI CCNGG 1 cut(s) 1577
SduI GDGCHC 2 cut(s) 673, 852
SfaNI GCATC 5 cut(s) 127, 149, 370, 1444, 1455
SfcI CTRYAG 1 cut(s) 760
SmiMI CAYNNNNRTG 3 cut(s) 57, 321, 1446
SmlI CTYRAG 2 cut(s) 45, 877
SmoI CTYRAG 2 cut(s) 45, 877
SpeI ACTAGT 1 cut(s) 1138
SphI GCATGC 1 cut(s) 1562
SspI AATATT 1 cut(s) 1982
SspMI CTAG 4 cut(s) 446, 1125, 1139, 2071
StyD4I CCNGG 1 cut(s) 1575
StyI CCWWGG 3 cut(s) 440, 556, 714
TaaI ACNGT 2 cut(s) 656, 1363
TaiI ACGT 3 cut(s) 676, 1077, 2011
TatI WGTACW 2 cut(s) 49, 539
TfiI GAWTC 2 cut(s) 1188, 1656
TscAI CASTG 3 cut(s) 115, 712, 1368
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 3 cut(s) 482, 710, 1616
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 6 cut(s) 39, 587, 834, 1055, 1190, 2016
TspGWI ACGGA 2 cut(s) 1612, 2006
TspRI CASTG 3 cut(s) 115, 712, 1368
VneI GTGCAC 2 cut(s) 669, 848
XapI RAATTY 8 cut(s) 561, 590, 732, 755, 1093, 1414, 1855, 2020
XceI RCATGY 3 cut(s) 1451, 1562, 1852
XmiI GTMKAC 1 cut(s) 1283
XmnI GAANNNNTTC 1 cut(s) 104
XspI CTAG 4 cut(s) 446, 1125, 1139, 2071
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.