Rroxscaffold_1G00013940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000165
Physical Location & Seq
Forward (+)
17228643 .. 17243630
14988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013940.1

Sequence Viewer

Length: 684 bp
ATGGATGAAACTATTGGAGACGAAGAAGAACTCAAGGTGGGAATGCAAGTACACTCTGATGATGAGGCTTACAATTTATATAACACCTATGCTTTGAGCTCCAAAAGCCAAGAAAACAATGATCCAAAAGCTCCAAATCATGTGTCTACATCTAATCATCAGTTTGGTGTACTTAACACCTCATTTTATAATCAGAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAGCTACAACTCTAACTACAAATACTACACTCGACAACAACCTCGGTGAAGTCAGACGGCTGAGGGCTGGCAGGAGGCCTGTCTGGAAGGGGTTTTATGGCCGGAAGAGAACGCTGTGGATTTGTGGCGCTAGGCCCGGTCGAAGGACCAACAAGCCCGACGCGGACCGCCGCAATGATTCGGATCCCATACCGCTCGGATCCCACTCCACCGAGACAGCCTCTACCACCCTTCATTGCCGACCTAACACTCTCTTGGCTCTCGATAAAGCAACACCAGACCAAGATTCCCTCAACACACACCTTGTGCCCACGACCACAACGAAGGCAAACAAGACGAGACCGAAGCTCGAAGAAAGCTCCATGAATGGAGAAGGGACATTTTCGTCAGGAAATAGGCTGCACAAGCTTTGGGCCTTGCGCATGGGTCGTGAACACTACCGCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.48

Weight (kDa)

9.05

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 189
AasI GACNNNNNNGTC 1 cut(s) 616
Acc16I TGCGCA 1 cut(s) 653
AccBSI CCGCTC 1 cut(s) 427
AccI GTMKAC 1 cut(s) 146
AccII CGCG 1 cut(s) 395
AciI CCGC 5 cut(s) 395, 400, 403, 425, 673
AclWI GGATC 5 cut(s) 116, 410, 423, 426, 439
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 196
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 2 cut(s) 51, 171
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 6 cut(s) 99, 131, 236, 580, 591, 640
AluI AGCT 6 cut(s) 99, 131, 236, 580, 591, 640
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 3 cut(s) 12, 440, 565
AlwI GGATC 5 cut(s) 116, 410, 423, 426, 439
AoxI GGCC 4 cut(s) 308, 331, 365, 645
ApeKI GCWGC 1 cut(s) 631
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 2 cut(s) 362, 654
AspS9I GGNCC 4 cut(s) 366, 378, 397, 645
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 2 cut(s) 378, 397
BaeGI GKGCMC 1 cut(s) 543
BamHI GGATCC 2 cut(s) 415, 431
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 618
BceAI ACGGC 1 cut(s) 305
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 12, 440, 565
BfaI CTAG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 363
BisI GCNGC 2 cut(s) 403, 632
BlsI GCNGC 2 cut(s) 404, 633
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 378, 397
BmgT120I GGNCC 4 cut(s) 366, 378, 397, 645
BmiI GGNNCC 2 cut(s) 417, 433
BmrFI CCNGG 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 437, 469
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 369
BsaBI GATNNNNATC 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 274
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 412, 466
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 414
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 2 cut(s) 412, 466
BseMII CTCAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 543
BseXI GCAGC 1 cut(s) 618
BsgI GTGCAG 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 395
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 4 cut(s) 310, 333, 367, 647
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 334, 369
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 3 cut(s) 12, 440, 565
BsmBI CGTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 622
BsmI GAATGC 1 cut(s) 48
BsnI GGCC 4 cut(s) 310, 333, 367, 647
Bso31I GGTCTC 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 101, 543
Bsp143I GATC 3 cut(s) 121, 415, 431
BspACI CCGC 5 cut(s) 395, 400, 403, 425, 673
BspANI GGCC 4 cut(s) 310, 333, 367, 647
BspCNI CTCAG 1 cut(s) 285
BspFNI CGCG 1 cut(s) 395
BspLI GGNNCC 2 cut(s) 417, 433
BspPI GGATC 5 cut(s) 116, 410, 423, 426, 439
BspTNI GGTCTC 1 cut(s) 565
BsrBI CCGCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 412, 466
BssECI CCNNGG 1 cut(s) 274
BssMI GATC 3 cut(s) 121, 415, 431
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 395
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 362, 654
BstKTI GATC 3 cut(s) 124, 418, 434
BstMAI GTCTC 3 cut(s) 12, 440, 565
BstMBI GATC 3 cut(s) 121, 415, 431
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 105, 637
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 543
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 618
BstX2I RGATCY 2 cut(s) 415, 431
BstYI RGATCY 2 cut(s) 415, 431
BsuRI GGCC 4 cut(s) 310, 333, 367, 647
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 301
CfoI GCGC 2 cut(s) 362, 654
Cfr13I GGNCC 4 cut(s) 366, 378, 397, 645
CpoI CGGWCCG 1 cut(s) 397
CseI GACGC 1 cut(s) 401
Csp6I GTAC 2 cut(s) 50, 170
CspI CGGWCCG 1 cut(s) 397
CviAII CATG 3 cut(s) 140, 595, 655
CviQI GTAC 2 cut(s) 50, 170
DdeI CTNAG 1 cut(s) 293
DpnI GATC 3 cut(s) 123, 417, 433
DpnII GATC 3 cut(s) 121, 415, 431
DraIII CACNNNGTG 1 cut(s) 538
DrdI GACNNNNNNGTC 1 cut(s) 616
DseDI GACNNNNNNGTC 1 cut(s) 616
EaeI YGGCCR 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Ecl136II GAGCTC 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 378, 397
Eco53kI GAGCTC 1 cut(s) 99
EcoICRI GAGCTC 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 101
Esp3I CGTCTC 1 cut(s) 12
FaeI CATG 3 cut(s) 143, 598, 658
FaiI YATR 9 cut(s) 79, 81, 90, 141, 189, 330, 422, 596, 656
FaqI GGGAC 1 cut(s) 622
FatI CATG 3 cut(s) 139, 594, 654
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 2 cut(s) 403, 632
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 403, 632
FspBI CTAG 1 cut(s) 363
FspI TGCGCA 1 cut(s) 653
GlaI GCGC 2 cut(s) 361, 653
GluI GCNGC 2 cut(s) 403, 632
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 4 cut(s) 310, 333, 367, 647
HapII CCGG 2 cut(s) 334, 369
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 362, 654
Hin1II CATG 3 cut(s) 143, 598, 658
Hin6I GCGC 2 cut(s) 360, 652
HinP1I GCGC 2 cut(s) 360, 652
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 3 cut(s) 223, 410, 518
HpaII CCGG 2 cut(s) 334, 369
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 52, 147, 170, 665
Hpy188I TCNGA 6 cut(s) 58, 195, 222, 287, 415, 431
Hpy188III TCNNGA 4 cut(s) 316, 494, 621, 662
Hpy8I GTNNAC 4 cut(s) 52, 147, 170, 665
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 5 cut(s) 313, 369, 473, 550, 599
HpyCH4V TGCA 3 cut(s) 46, 230, 634
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 637
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 3 cut(s) 143, 598, 658
HspAI GCGC 2 cut(s) 360, 652
Kzo9I GATC 3 cut(s) 121, 415, 431
LmnI GCTCC 3 cut(s) 104, 136, 596
LpnPI CCDG 9 cut(s) 246, 285, 289, 301, 324, 347, 382, 522, 606
Lsp1109I GCAGC 1 cut(s) 618
MaeI CTAG 1 cut(s) 363
MalI GATC 3 cut(s) 123, 417, 433
MbiI CCGCTC 1 cut(s) 427
MboI GATC 3 cut(s) 121, 415, 431
MboII GAAGA 4 cut(s) 35, 38, 349, 596
MflI RGATCY 2 cut(s) 415, 431
MhlI GDGCHC 2 cut(s) 101, 543
MluCI AATT 2 cut(s) 73, 196
MnlI CCTC 7 cut(s) 58, 190, 284, 288, 300, 463, 533
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 2 cut(s) 334, 369
MspR9I CCNGG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 48
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 2 cut(s) 105, 637
NciI CCSGG 1 cut(s) 369
NdeII GATC 3 cut(s) 121, 415, 431
NlaIII CATG 3 cut(s) 143, 598, 658
NlaIV GGNNCC 2 cut(s) 417, 433
NsbI TGCGCA 1 cut(s) 653
PceI AGGCCT 1 cut(s) 310
PcsI WCGNNNNNNNCGW 1 cut(s) 551
PctI GAATGC 1 cut(s) 48
PfeI GAWTC 3 cut(s) 223, 410, 518
PkrI GCNGC 2 cut(s) 404, 633
PsiI TTATAA 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 417, 433
PspPI GGNCC 4 cut(s) 366, 378, 397, 645
PsuI RGATCY 2 cut(s) 415, 431
RsaI GTAC 2 cut(s) 51, 171
RsaNI GTAC 2 cut(s) 50, 170
RseI CAYNNNNRTG 1 cut(s) 57
Rsr2I CGGWCCG 1 cut(s) 397
RsrII CGGWCCG 1 cut(s) 397
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 403, 632
Sau3AI GATC 3 cut(s) 121, 415, 431
Sau96I GGNCC 4 cut(s) 366, 378, 397, 645
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 2 cut(s) 101, 543
SinI GGWCC 2 cut(s) 378, 397
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 73, 196
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 5 cut(s) 395, 400, 403, 425, 673
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 101
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 367
TaqI TCGA 4 cut(s) 264, 373, 495, 582
TaqII GACCGA 1 cut(s) 589
TasI AATT 2 cut(s) 73, 196
TatI WGTACW 2 cut(s) 49, 169
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 3 cut(s) 223, 410, 518
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseI GCWGC 1 cut(s) 631
TspDTI ATGAA 3 cut(s) 21, 455, 611
VpaK11BI GGWCC 2 cut(s) 378, 397
XapI RAATTY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.