Rmu_sc0001095.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001095.1
OG0000165
Physical Location & Seq
Forward (+)
405 .. 1514
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001095.1_g000001.1.cds

Sequence Viewer

Length: 1110 bp
atgggacataaacaacctaaaaccattttcacagatgaggatacagcaatcgcaaatgcacttgcaagtgtgcttccagagacacgccaccgatggtgcagttggaacatctctaagaatgctacgctacagcttgctagtcattatgctaatcccgagttcaagaagcacatcaacatatgctttcatgattgttttactgaagatgagtttcaagctgcatggggtaacatgattaaagcattcagccttgaaagtaactcgtggctgaagatgatgtattcgcttaaagagaaatggtgccctgcttttagcttagatactttctctgcgaatattgcatccagccagaggggtgagagcatgaacaatattttccatcaaatatctagaacaaatggggatctgatcagttttgcacaccattacgaggaaaaaacaaaagagatgcgattcaaagagttggaagaggattttcgtggtagaagtgccacgcctcgtctcacaataaatagtggtgtctttaagcaagcagctactgagtatactgttagaatgtattcatttcttgaaaatgagctcatgggtatctttggggtgaggatgacagaagtcgatactgatgggaatgagtgtatttatgaagctactgaagaaggttatggaagagtctatagaattcgatttcgatatgattgttttactgctagggtttcctgttcttgtaagttatttgaatccatgggagtgttgtgtcgtcatgctctaaaagtattggagttgaaaaacttcacaagcataccagcccagtacatagtgaagagatggaccaaaggggcgaagaaggggattgtggtgagtactgatttctccaagtcaccatacaaaaaggcaaagtctgcccaatcgtcgcgcctaggtgcattgatgcacgaaggaaccaatgttttcagtataggctcattgtgtgattctggaactaggattgtcaaacagaagttagcagagacgatgcagttactcgaaggtgatgcagaaactaccaacatggttagaaatttgagaagagcagatgactcatctgtctgtgctgcggttctggatgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

369

Amino Acids

41.98

Weight (kDa)

8.21

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 545
AccII CGCG 1 cut(s) 913
AciI CCGC 1 cut(s) 1094
AclWI GGATC 1 cut(s) 411
AcsI RAATTY 2 cut(s) 678, 1057
AcuI CTGAAG 3 cut(s) 222, 290, 672
AfaI GTAC 2 cut(s) 812, 862
AfiI CCNNNNNNNGG 2 cut(s) 351, 430
AgsI TTSAA 7 cut(s) 163, 215, 254, 457, 572, 737, 784
AluBI AGCT 6 cut(s) 133, 218, 315, 536, 580, 647
AluI AGCT 6 cut(s) 133, 218, 315, 536, 580, 647
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 3 cut(s) 74, 506, 1001
AlwI GGATC 1 cut(s) 411
AlwNI CAGNNNCTG 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 218, 533, 1091
ApoI RAATTY 2 cut(s) 678, 1057
Asp700I GAANNNNTTC 2 cut(s) 559, 788
AspA2I CCTAGG 1 cut(s) 916
AspLEI GCGC 1 cut(s) 915
AspS9I GGNCC 1 cut(s) 828
AsuHPI GGTGA 5 cut(s) 368, 610, 868, 870, 1040
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 1 cut(s) 828
AvrII CCTAGG 1 cut(s) 916
BaeGI GKGCMC 1 cut(s) 305
BanI GGYRCC 1 cut(s) 300
BanII GRGCYC 1 cut(s) 582
BauI CACGAG 1 cut(s) 262
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 205, 545, 1078
BccI CCATC 4 cut(s) 87, 387, 617, 819
BcgI CGANNNNNNTGC 2 cut(s) 1013, 1047
BciVI GTATCC 1 cut(s) 34
BclI TGATCA 1 cut(s) 408
BcoDI GTCTC 3 cut(s) 74, 506, 1001
BfaI CTAG 5 cut(s) 138, 390, 708, 917, 981
BfmI CTRYAG 2 cut(s) 128, 673
BfuI GTATCC 1 cut(s) 34
BisI GCNGC 3 cut(s) 219, 534, 1092
BlnI CCTAGG 1 cut(s) 916
BlsI GCNGC 3 cut(s) 220, 535, 1093
BmcAI AGTACT 1 cut(s) 862
Bme18I GGWCC 1 cut(s) 828
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 828
BmiI GGNNCC 2 cut(s) 302, 940
BmrI ACTGGG 1 cut(s) 802
BmsI GCATC 5 cut(s) 350, 438, 918, 1002, 1021
BmuI ACTGGG 1 cut(s) 802
BoxI GACNNNNGTC 1 cut(s) 611
BsaJI CCNNGG 2 cut(s) 741, 916
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 430
Bse1I ACTGG 1 cut(s) 808
BseDI CCNNGG 2 cut(s) 741, 916
BseGI GGATG 3 cut(s) 341, 609, 1108
BseLI CCNNNNNNNGG 2 cut(s) 351, 430
BseMII CTCAG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 808
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 3 cut(s) 205, 545, 1078
BsgI GTGCAG 1 cut(s) 118
Bsh1236I CGCG 1 cut(s) 913
BshNI GGYRCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 351, 430
BsmAI GTCTC 3 cut(s) 74, 506, 1001
BsmBI CGTCTC 2 cut(s) 506, 1001
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 2 cut(s) 124, 242
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 2 cut(s) 305, 582
Bsp143I GATC 2 cut(s) 403, 408
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 1 cut(s) 1094
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 1 cut(s) 913
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 302, 940
BspPI GGATC 1 cut(s) 411
BspQI GCTCTTC 1 cut(s) 1060
BspT107I GGYRCC 1 cut(s) 300
BsrI ACTGG 1 cut(s) 808
BssECI CCNNGG 2 cut(s) 741, 916
BssMI GATC 2 cut(s) 403, 408
BssNAI GTATAC 1 cut(s) 546
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 2 cut(s) 741, 916
Bst1107I GTATAC 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 550
Bst6I CTCTTC 4 cut(s) 462, 661, 815, 1060
BstAPI GCANNNNNTGC 1 cut(s) 899
BstC8I GCNNGC 2 cut(s) 135, 531
BstDEI CTNAG 3 cut(s) 114, 316, 540
BstDSI CCRYGG 1 cut(s) 741
BstF5I GGATG 3 cut(s) 341, 609, 1108
BstFNI CGCG 1 cut(s) 913
BstHHI GCGC 1 cut(s) 915
BstKTI GATC 2 cut(s) 406, 411
BstMAI GTCTC 3 cut(s) 74, 506, 1001
BstMBI GATC 2 cut(s) 403, 408
BstMWI GCNNNNNNNGC 2 cut(s) 338, 899
BstPAI GACNNNNGTC 1 cut(s) 611
BstSFI CTRYAG 2 cut(s) 128, 673
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 913
BstV1I GCAGC 3 cut(s) 205, 545, 1078
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BstZ17I GTATAC 1 cut(s) 546
BsuI GTATCC 1 cut(s) 34
BtgI CCRYGG 1 cut(s) 741
BtsCI GGATG 3 cut(s) 341, 609, 1108
Cac8I GCNNGC 2 cut(s) 135, 531
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 915
Cfr13I GGNCC 1 cut(s) 828
Csp6I GTAC 2 cut(s) 811, 861
CviAII CATG 8 cut(s) 188, 222, 232, 364, 583, 742, 761, 1048
CviQI GTAC 2 cut(s) 811, 861
DdeI CTNAG 3 cut(s) 114, 316, 540
DpnI GATC 2 cut(s) 405, 410
DpnII GATC 2 cut(s) 403, 408
DrdI GACNNNNNNGTC 1 cut(s) 1082
DseDI GACNNNNNNGTC 1 cut(s) 1082
Eam1104I CTCTTC 4 cut(s) 462, 661, 815, 1060
EarI CTCTTC 4 cut(s) 462, 661, 815, 1060
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 741, 916
Eco24I GRGCYC 1 cut(s) 582
Eco47I GGWCC 1 cut(s) 828
Eco53kI GAGCTC 1 cut(s) 580
Eco57I CTGAAG 3 cut(s) 222, 290, 672
Eco88I CYCGRG 1 cut(s) 155
EcoICRI GAGCTC 1 cut(s) 580
EcoRI GAATTC 1 cut(s) 678
EcoT14I CCWWGG 2 cut(s) 741, 916
EcoT38I GRGCYC 1 cut(s) 582
ErhI CCWWGG 2 cut(s) 741, 916
Esp3I CGTCTC 2 cut(s) 506, 1001
FaeI CATG 8 cut(s) 191, 225, 235, 367, 586, 745, 764, 1051
FaqI GGGAC 1 cut(s) 18
FatI CATG 8 cut(s) 187, 221, 231, 363, 582, 741, 760, 1047
FauNDI CATATG 1 cut(s) 179
FbaI TGATCA 1 cut(s) 408
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 3 cut(s) 219, 534, 1092
FokI GGATG 2 cut(s) 328, 616
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 219, 534, 1092
FspBI CTAG 5 cut(s) 138, 390, 708, 917, 981
GlaI GCGC 1 cut(s) 914
GluI GCNGC 3 cut(s) 219, 534, 1092
HhaI GCGC 1 cut(s) 915
Hin1II CATG 8 cut(s) 191, 225, 235, 367, 586, 745, 764, 1051
Hin6I GCGC 1 cut(s) 913
HinP1I GCGC 1 cut(s) 913
HinfI GANTC 5 cut(s) 453, 669, 737, 971, 1076
HphI GGTGA 5 cut(s) 368, 610, 868, 870, 1040
Hpy166II GTNNAC 1 cut(s) 546
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 8 cut(s) 77, 155, 163, 188, 390, 569, 975, 1100
Hpy8I GTNNAC 1 cut(s) 546
Hpy99I CGWCG 1 cut(s) 913
HpyAV CCTTC 4 cut(s) 650, 838, 929, 1019
HpyCH4III ACNGT 1 cut(s) 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 899
HpyF3I CTNAG 3 cut(s) 114, 316, 540
Hsp92II CATG 8 cut(s) 191, 225, 235, 367, 586, 745, 764, 1051
HspAI GCGC 1 cut(s) 913
Ksp22I TGATCA 1 cut(s) 408
Kzo9I GATC 2 cut(s) 403, 408
LguI GCTCTTC 1 cut(s) 1060
LpnPI CCDG 9 cut(s) 90, 318, 358, 362, 730, 816, 821, 960, 1085
Lsp1109I GCAGC 3 cut(s) 205, 545, 1078
LweI GCATC 5 cut(s) 350, 438, 918, 1002, 1021
MaeI CTAG 5 cut(s) 138, 390, 708, 917, 981
MaeIII GTNAC 4 cut(s) 227, 257, 876, 1017
MalI GATC 2 cut(s) 405, 410
MboI GATC 2 cut(s) 403, 408
MboII GAAGA 8 cut(s) 215, 283, 479, 665, 678, 832, 853, 1077
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 305, 582
MluCI AATT 2 cut(s) 678, 1057
MlyI GAGTC 2 cut(s) 678, 1070
MmeI TCCRAC 2 cut(s) 83, 444
MnlI CCTC 6 cut(s) 31, 345, 424, 463, 507, 594
MroXI GAANNNNTTC 2 cut(s) 559, 788
MseI TTAA 3 cut(s) 237, 288, 525
MslI CAYNNNNRTG 1 cut(s) 746
Mva1269I GAATGC 2 cut(s) 124, 242
MvnI CGCG 1 cut(s) 913
MwoI GCNNNNNNNGC 2 cut(s) 338, 899
NcoI CCATGG 1 cut(s) 741
NdeI CATATG 1 cut(s) 179
NdeII GATC 2 cut(s) 403, 408
NlaIII CATG 8 cut(s) 191, 225, 235, 367, 586, 745, 764, 1051
NlaIV GGNNCC 2 cut(s) 302, 940
NmuCI GTSAC 1 cut(s) 876
PagI TCATGA 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 1060
PctI GAATGC 2 cut(s) 124, 242
PdmI GAANNNNTTC 2 cut(s) 559, 788
PfeI GAWTC 3 cut(s) 453, 737, 971
PkrI GCNGC 3 cut(s) 220, 535, 1093
PleI GAGTC 2 cut(s) 677, 1070
PpsI GAGTC 2 cut(s) 677, 1070
PshAI GACNNNNGTC 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 302, 940
PspPI GGNCC 1 cut(s) 828
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 812, 862
RsaNI GTAC 2 cut(s) 811, 861
RseI CAYNNNNRTG 1 cut(s) 746
SacI GAGCTC 1 cut(s) 582
SapI GCTCTTC 1 cut(s) 1060
SaqAI TTAA 3 cut(s) 237, 288, 525
SatI GCNGC 3 cut(s) 219, 534, 1092
Sau3AI GATC 2 cut(s) 403, 408
Sau96I GGNCC 1 cut(s) 828
ScaI AGTACT 1 cut(s) 862
SchI GAGTC 2 cut(s) 678, 1070
SduI GDGCHC 2 cut(s) 305, 582
SfaNI GCATC 5 cut(s) 350, 438, 918, 1002, 1021
SfcI CTRYAG 2 cut(s) 128, 673
SinI GGWCC 1 cut(s) 828
SmiMI CAYNNNNRTG 1 cut(s) 746
Sse9I AATT 2 cut(s) 678, 1057
SsiI CCGC 1 cut(s) 1094
SspI AATATT 2 cut(s) 337, 373
SspMI CTAG 5 cut(s) 138, 390, 708, 917, 981
SstI GAGCTC 1 cut(s) 582
StyI CCWWGG 2 cut(s) 741, 916
TaaI ACNGT 1 cut(s) 550
TaqI TCGA 4 cut(s) 615, 682, 688, 1023
TasI AATT 2 cut(s) 678, 1057
TatI WGTACW 2 cut(s) 810, 860
TfiI GAWTC 3 cut(s) 453, 737, 971
Tru1I TTAA 3 cut(s) 237, 288, 525
Tru9I TTAA 3 cut(s) 237, 288, 525
TseFI GTSAC 1 cut(s) 876
TseI GCWGC 3 cut(s) 218, 533, 1091
Tsp45I GTSAC 1 cut(s) 876
TspDTI ATGAA 4 cut(s) 176, 380, 552, 657
VpaK11BI GGWCC 1 cut(s) 828
XapI RAATTY 2 cut(s) 678, 1057
XbaI TCTAGA 1 cut(s) 389
XmaJI CCTAGG 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 545
XmnI GAANNNNTTC 2 cut(s) 559, 788
XspI CTAG 5 cut(s) 138, 390, 708, 917, 981
ZrmI AGTACT 1 cut(s) 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.