Rmu_sc0023414.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023414.1
OG0000165
Physical Location & Seq
Reverse (-)
1 .. 667
667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023414.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgcttgaaggaaatagtgtttatgacatagcttcattgagttattcagggactaagattgtgaaggagctgttagtagaggcaatgaagcgtcttgagaaagacaaggaaactcaggacatgttggaaaatttgaacaaagttggtaatcagtccaatcttgacattccaataaactcaagtcatgttttagatccaccatgtgccaagactaaaggaatgacaaatgaaagaatcaaagacataagggagaaaaaacaacggaagaataagaaaacaaaagatgcaagccaagacaatcaagaaaacgtgattgattcttcttttataccaacagctccacttcatgtgccagcatttaatcctcactttggtgtacctcacaccccatttcataatcag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

134

Amino Acids

15.12

Weight (kDa)

7.86

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 203
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 1 cut(s) 371
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 2 cut(s) 8, 136
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 3 cut(s) 32, 70, 338
AluI AGCT 3 cut(s) 32, 70, 338
AlwI GGATC 1 cut(s) 188
ApoI RAATTY 1 cut(s) 130
BmsI GCATC 1 cut(s) 274
BpuEI CTTGAG 2 cut(s) 116, 163
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 127
BspPI GGATC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 90
BssMI GATC 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 289, 354
BstDEI CTNAG 2 cut(s) 54, 114
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 289, 354
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 377
CviAII CATG 4 cut(s) 121, 185, 201, 347
CviJI RGCY 4 cut(s) 32, 70, 291, 338
CviKI_1 RGCY 4 cut(s) 32, 70, 291, 338
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 54, 114
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraIII CACNNNGTG 1 cut(s) 203
FaeI CATG 4 cut(s) 124, 188, 204, 350
FaiI YATR 9 cut(s) 24, 29, 122, 186, 202, 245, 329, 348, 396
FaqI GGGAC 1 cut(s) 64
FatI CATG 4 cut(s) 120, 184, 200, 346
HgaI GACGC 1 cut(s) 80
Hin1II CATG 4 cut(s) 124, 188, 204, 350
HinfI GANTC 2 cut(s) 234, 317
Hpy166II GTNNAC 1 cut(s) 377
Hpy188III TCNNGA 4 cut(s) 95, 116, 161, 302
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 54, 114
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 4 cut(s) 124, 188, 204, 350
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 67, 343
LpnPI CCDG 3 cut(s) 33, 101, 366
LweI GCATC 1 cut(s) 274
MaeII ACGT 1 cut(s) 309
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 2 cut(s) 277, 312
MflI RGATCY 1 cut(s) 193
MluCI AATT 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 3 cut(s) 73, 375, 390
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 1 cut(s) 372
NdeII GATC 1 cut(s) 193
NlaIII CATG 4 cut(s) 124, 188, 204, 350
NspI RCATGY 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 372
PciI ACATGT 1 cut(s) 120
PfeI GAWTC 2 cut(s) 234, 317
PscI ACATGT 1 cut(s) 120
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 372
SaqAI TTAA 1 cut(s) 360
Sau3AI GATC 1 cut(s) 193
SetI ASST 5 cut(s) 34, 72, 312, 340, 382
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 372
SmlI CTYRAG 2 cut(s) 95, 178
SmoI CTYRAG 2 cut(s) 95, 178
Sse9I AATT 1 cut(s) 130
TaiI ACGT 1 cut(s) 312
TasI AATT 1 cut(s) 130
TfiI GAWTC 2 cut(s) 234, 317
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TspDTI ATGAA 5 cut(s) 24, 101, 243, 335, 383
TspGWI ACGGA 1 cut(s) 277
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.