Rh2BG357800

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000165
Physical Location & Seq
Forward (+)
49423428 .. 49425562
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG357800.1

Sequence Viewer

Length: 1368 bp
ATGTTCTTTTACTCAGTGCAAGTGGATCAAGAAAATCGAATGACAAATTTCTTTTGGAGAGATGGTCGATCAAGACTTGATTATGAGTGCTTCGGAGATGTAGTAGTTTTTGATACTACATACAGAACCAACAGGTACAACATGATTTGTGCTCCTTTTGTGGGTGTTAATAACCATTGGAAAAATGTATTGTTTGGATGTGCTTTTCTATTGGATGAGACAACTGCTTCATTTAATTGGTTGTTTGAAACATTTTTAGAGTCAATGGGAAATCAACCACCAAAGACCATTTATACTGATCAATGTCAAGCAATGGCAAATGGCATTAGAGATGTTTTTCCTGGTACTTGTCACCGTTTATGCTTGTGGCATATATCGTTGAATGCAACAAGACATATAGCAAGCTACTTAGGAATCCCTGACTTTAAGAAGATGTTCAATAAGTGTCTTTATGGTTGTGAGACAGTTGCAGAATTTCAGTCTACATGGGATGAGTTACTTGTGACATTTAATGTTACAGAGAATGAATGGTTGAAGAGATTATATACACTACGGGAAAAATGGTGTGCAGCCTTCACCTTAGACACTTTTTCTGCTAGAATTCAAGCTTCACAAAGAAGTGAGAGCACAAATAATGTGTTCCATCATATATCTGCTGCAAGAATGAGGCTTATTGAATTTGTGCATCACTATGATAAGCAAGTAGAAGCCACACGCTCAAGTGAATTAGAAGAGACTTTTCGTTGCACAAATGGCGTACCTTCTACTGCTAAGAGGAGTACTAAACTACTATATCATGCTGGTAAAGTTTATACAAGAAAAATTTATAATTTATTTGGGACTGAGCTTACCGCTAGCATGGCATTCAAGATGGATGAAGTTGATACTAATGGAACTATACATACTAGTAAAGGTAATAGTGAGAAGAAACAAAAGGAGAGGCCATCAGAAGATCCAGTCTCATCTAGTAAGAAGGTTTGCAAGAGATTGTCAAACACTAATGTGCATCCATGTTTGCCTCCATCTAATCAGCTTTATCCATCTATGAGCTTGTCGACAATCAATACTCAGGGATGTTTGCCTCCACCTAATCAGGCCTCCCTTCACGTACCATATGATTCAAATTTCTTTAACACATTGAATGTGTTGAGGAGTACAAGTAGGATTGACCAAATGGGTTCTGATTCTAAAGCATTCAATCAGCCAAATGTTTCTTTTACTAGCATGCTTTTGAGTCAGCATACATCTGGAAGCACTTATGCCCCAAACCATCCATTCGGATCATATTCTCAACCAAGCCAGGAGTTGCATTCAACAACTGATGAGCAGCAGCAAGGTTCAAGTCATATGCCATATTATTTACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

455

Amino Acids

52.12

Weight (kDa)

7.58

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 5 - 115 1.8e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 34 - 126 4.5e-29 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AccI GTMKAC 2 cut(s) 482, 1055
AciI CCGC 1 cut(s) 852
AclWI GGATC 3 cut(s) 33, 947, 1288
AcsI RAATTY 6 cut(s) 46, 473, 600, 677, 822, 1123
AfaI GTAC 6 cut(s) 137, 346, 759, 781, 1110, 1156
AfiI CCNNNNNNNGG 1 cut(s) 161
AhlI ACTAGT 1 cut(s) 905
AjnI CCWGG 2 cut(s) 340, 1299
AleI CACNNNNGTG 1 cut(s) 1001
AluBI AGCT 5 cut(s) 405, 608, 847, 1033, 1050
AluI AGCT 5 cut(s) 405, 608, 847, 1033, 1050
Alw21I GWGCWC 2 cut(s) 154, 629
Alw26I GTCTC 4 cut(s) 212, 455, 728, 964
AlwI GGATC 3 cut(s) 33, 947, 1288
AoxI GGCC 2 cut(s) 941, 1095
ApeKI GCWGC 4 cut(s) 569, 656, 1327, 1330
ApoI RAATTY 6 cut(s) 46, 473, 600, 677, 822, 1123
Asp700I GAANNNNTTC 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 344, 568
AsuNHI GCTAGC 1 cut(s) 854
Bbv12I GWGCWC 2 cut(s) 154, 629
BbvI GCAGC 4 cut(s) 581, 643, 1339, 1342
BccI CCATC 7 cut(s) 56, 651, 865, 952, 1030, 1048, 1278
BciT130I CCWGG 2 cut(s) 342, 1301
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 4 cut(s) 212, 455, 728, 964
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 5 cut(s) 597, 855, 906, 966, 1221
BisI GCNGC 4 cut(s) 570, 657, 1328, 1331
BlsI GCNGC 4 cut(s) 571, 658, 1329, 1332
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 2 cut(s) 342, 1301
BmrFI CCNGG 2 cut(s) 342, 1301
BmsI GCATC 2 cut(s) 694, 1015
BmtI GCTAGC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 703
BsaAI YACGTR 1 cut(s) 1108
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 87, 117, 1144, 1174
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 956
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 342, 1301
BseGI GGATG 7 cut(s) 203, 220, 496, 880, 1006, 1079, 1270
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 27, 834, 1082
BseNI ACTGG 1 cut(s) 956
BseRI GAGGAG 2 cut(s) 790, 1165
BseXI GCAGC 4 cut(s) 581, 643, 1339, 1342
BsgI GTGCAG 1 cut(s) 588
BshFI GGCC 2 cut(s) 943, 1097
BsiHKAI GWGCWC 2 cut(s) 154, 629
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 4 cut(s) 212, 455, 728, 964
BsmFI GGGAC 1 cut(s) 853
BsmI GAATGC 4 cut(s) 388, 863, 1193, 1309
BsnI GGCC 2 cut(s) 943, 1097
Bsp1286I GDGCHC 2 cut(s) 154, 629
Bsp143I GATC 5 cut(s) 25, 68, 298, 952, 1280
BspACI CCGC 1 cut(s) 852
BspANI GGCC 2 cut(s) 943, 1097
BspCNI CTCAG 3 cut(s) 26, 835, 1081
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 3 cut(s) 33, 947, 1288
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 1 cut(s) 956
BssMI GATC 5 cut(s) 25, 68, 298, 952, 1280
Bst2UI CCWGG 2 cut(s) 342, 1301
Bst4CI ACNGT 2 cut(s) 356, 466
Bst6I CTCTTC 2 cut(s) 530, 726
BstBAI YACGTR 1 cut(s) 1108
BstC8I GCNNGC 3 cut(s) 403, 856, 1226
BstDEI CTNAG 6 cut(s) 13, 409, 580, 771, 843, 1068
BstF5I GGATG 7 cut(s) 203, 220, 496, 880, 1006, 1079, 1270
BstKTI GATC 5 cut(s) 28, 71, 301, 955, 1283
BstMAI GTCTC 4 cut(s) 212, 455, 728, 964
BstMBI GATC 5 cut(s) 25, 68, 298, 952, 1280
BstMWI GCNNNNNNNGC 2 cut(s) 753, 860
BstNI CCWGG 2 cut(s) 342, 1301
BstNSI RCATGY 1 cut(s) 1228
BstSCI CCNGG 2 cut(s) 340, 1299
BstV1I GCAGC 4 cut(s) 581, 643, 1339, 1342
BstX2I RGATCY 1 cut(s) 952
BstYI RGATCY 1 cut(s) 952
BsuRI GGCC 2 cut(s) 943, 1097
BtsCI GGATG 7 cut(s) 203, 220, 496, 880, 1006, 1079, 1270
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 403, 856, 1226
Csp6I GTAC 6 cut(s) 136, 345, 758, 780, 1109, 1155
CviAII CATG 6 cut(s) 142, 486, 797, 859, 1011, 1225
CviQI GTAC 6 cut(s) 136, 345, 758, 780, 1109, 1155
DdeI CTNAG 6 cut(s) 13, 409, 580, 771, 843, 1068
DpnI GATC 5 cut(s) 27, 70, 300, 954, 1282
DpnII GATC 5 cut(s) 25, 68, 298, 952, 1280
Eam1104I CTCTTC 2 cut(s) 530, 726
EarI CTCTTC 2 cut(s) 530, 726
Eco147I AGGCCT 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 600
EcoRII CCWGG 2 cut(s) 340, 1299
FaeI CATG 6 cut(s) 145, 489, 800, 862, 1014, 1228
FaqI GGGAC 1 cut(s) 853
FatI CATG 6 cut(s) 141, 485, 796, 858, 1010, 1224
FauNDI CATATG 2 cut(s) 1114, 1347
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 2 cut(s) 482, 1055
Fnu4HI GCNGC 4 cut(s) 570, 657, 1328, 1331
FokI GGATG 7 cut(s) 210, 227, 503, 887, 993, 1086, 1257
Fsp4HI GCNGC 4 cut(s) 570, 657, 1328, 1331
FspBI CTAG 5 cut(s) 597, 855, 906, 966, 1221
GluI GCNGC 4 cut(s) 570, 657, 1328, 1331
HaeIII GGCC 2 cut(s) 943, 1097
Hin1II CATG 6 cut(s) 145, 489, 800, 862, 1014, 1228
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 1 cut(s) 606
HinfI GANTC 5 cut(s) 260, 414, 1118, 1184, 1234
HphI GGTGA 2 cut(s) 344, 568
Hpy166II GTNNAC 2 cut(s) 483, 1056
Hpy188I TCNGA 4 cut(s) 95, 949, 1183, 1280
Hpy188III TCNNGA 4 cut(s) 29, 72, 868, 1248
Hpy8I GTNNAC 2 cut(s) 483, 1056
HpyAV CCTTC 4 cut(s) 583, 771, 967, 1112
HpyCH4III ACNGT 2 cut(s) 356, 466
HpyCH4IV ACGT 1 cut(s) 1107
HpyF10VI GCNNNNNNNGC 2 cut(s) 753, 860
HpyF3I CTNAG 6 cut(s) 13, 409, 580, 771, 843, 1068
HpySE526I ACGT 1 cut(s) 1107
Hsp92II CATG 6 cut(s) 145, 489, 800, 862, 1014, 1228
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 5 cut(s) 25, 68, 298, 952, 1280
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 4 cut(s) 581, 643, 1339, 1342
LweI GCATC 2 cut(s) 694, 1015
MaeI CTAG 5 cut(s) 597, 855, 906, 966, 1221
MaeII ACGT 1 cut(s) 1107
MaeIII GTNAC 4 cut(s) 350, 495, 502, 514
MalI GATC 5 cut(s) 27, 70, 300, 954, 1282
MboI GATC 5 cut(s) 25, 68, 298, 952, 1280
MboII GAAGA 5 cut(s) 442, 547, 743, 937, 962
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 2 cut(s) 154, 629
MluCI AATT 9 cut(s) 46, 235, 473, 600, 677, 725, 822, 829, 1123
MlyI GAGTC 2 cut(s) 269, 1243
MnlI CCTC 7 cut(s) 660, 768, 933, 1029, 1092, 1108, 1143
MroXI GAANNNNTTC 1 cut(s) 434
MseI TTAA 5 cut(s) 168, 234, 426, 510, 1131
MslI CAYNNNNRTG 2 cut(s) 690, 1001
MspR9I CCNGG 2 cut(s) 342, 1301
Mva1269I GAATGC 4 cut(s) 388, 863, 1193, 1309
MvaI CCWGG 2 cut(s) 342, 1301
MwoI GCNNNNNNNGC 2 cut(s) 753, 860
NdeI CATATG 2 cut(s) 1114, 1347
NdeII GATC 5 cut(s) 25, 68, 298, 952, 1280
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 6 cut(s) 145, 489, 800, 862, 1014, 1228
NmuCI GTSAC 2 cut(s) 350, 502
NspI RCATGY 1 cut(s) 1228
OliI CACNNNNGTG 1 cut(s) 1001
PaeI GCATGC 1 cut(s) 1228
PceI AGGCCT 1 cut(s) 1097
PctI GAATGC 4 cut(s) 388, 863, 1193, 1309
PdmI GAANNNNTTC 1 cut(s) 434
PfeI GAWTC 3 cut(s) 414, 1118, 1184
PkrI GCNGC 4 cut(s) 571, 658, 1329, 1332
PleI GAGTC 2 cut(s) 268, 1242
PpsI GAGTC 2 cut(s) 268, 1242
Ppu21I YACGTR 1 cut(s) 1108
PsiI TTATAA 1 cut(s) 828
Psp6I CCWGG 2 cut(s) 340, 1299
PspGI CCWGG 2 cut(s) 340, 1299
PsrI GAACNNNNNNTAC 2 cut(s) 886, 918
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 6 cut(s) 137, 346, 759, 781, 1110, 1156
RsaNI GTAC 6 cut(s) 136, 345, 758, 780, 1109, 1155
RseI CAYNNNNRTG 2 cut(s) 690, 1001
SalI GTCGAC 1 cut(s) 1054
SaqAI TTAA 5 cut(s) 168, 234, 426, 510, 1131
SatI GCNGC 4 cut(s) 570, 657, 1328, 1331
Sau3AI GATC 5 cut(s) 25, 68, 298, 952, 1280
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 2 cut(s) 269, 1243
ScrFI CCNGG 2 cut(s) 342, 1301
SduI GDGCHC 2 cut(s) 154, 629
SfaNI GCATC 2 cut(s) 694, 1015
SmiMI CAYNNNNRTG 2 cut(s) 690, 1001
SmlI CTYRAG 1 cut(s) 718
SmoI CTYRAG 1 cut(s) 718
SpeI ACTAGT 1 cut(s) 905
SphI GCATGC 1 cut(s) 1228
Sse9I AATT 9 cut(s) 46, 235, 473, 600, 677, 725, 822, 829, 1123
SseBI AGGCCT 1 cut(s) 1097
SsiI CCGC 1 cut(s) 852
SspMI CTAG 5 cut(s) 597, 855, 906, 966, 1221
StuI AGGCCT 1 cut(s) 1097
StyD4I CCNGG 2 cut(s) 340, 1299
TaaI ACNGT 2 cut(s) 356, 466
TaiI ACGT 1 cut(s) 1110
TaqI TCGA 3 cut(s) 37, 67, 1055
TasI AATT 9 cut(s) 46, 235, 473, 600, 677, 725, 822, 829, 1123
TatI WGTACW 2 cut(s) 779, 1154
TfiI GAWTC 3 cut(s) 414, 1118, 1184
Tru1I TTAA 5 cut(s) 168, 234, 426, 510, 1131
Tru9I TTAA 5 cut(s) 168, 234, 426, 510, 1131
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 2 cut(s) 350, 502
TseI GCWGC 4 cut(s) 569, 656, 1327, 1330
Tsp45I GTSAC 2 cut(s) 350, 502
TspDTI ATGAA 3 cut(s) 219, 540, 891
TspRI CASTG 1 cut(s) 21
XapI RAATTY 6 cut(s) 46, 473, 600, 677, 822, 1123
XceI RCATGY 1 cut(s) 1228
XmiI GTMKAC 2 cut(s) 482, 1055
XmnI GAANNNNTTC 1 cut(s) 434
XspI CTAG 5 cut(s) 597, 855, 906, 966, 1221
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.