Rh2CG161100

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000165
Physical Location & Seq
Forward (+)
14114729 .. 14118949
4221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG161100.1

Sequence Viewer

Length: 357 bp
ATGAGAAATGAAGAGCTAATGTGGCTGGAGGAATTCTTATTGAAAACAGTTTACTATCAGTGCTTTGGCTGGCACCGCAACCGAGGCATGATGCAGAAGCTATCCGAGCTGCAATGGATTCTGGTGAATCCTAGGTTTGGTAGATGCAATGCAAACTATCATTCTGGTGTGTCTTTTTGCATCTCTCCGACCTACCACCCGTACCCAAAGACCACATTGAATGACCTCCTTGAAAATCTTGATGCTCTAGCCATTTCCAAGTGGGTTAGACATAGGTTGCAGCTTGACCCAGATTTTACTGAGGGGTTTGAGAAGGTGAAGTTGTGCAGGCAATTTGTTTACATGCGGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

118

Amino Acids

14.24

Weight (kDa)

8.96

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 2 cut(s) 76, 346
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 3 cut(s) 43, 220, 233
AluBI AGCT 4 cut(s) 16, 100, 109, 283
AluI AGCT 4 cut(s) 16, 100, 109, 283
ApeKI GCWGC 2 cut(s) 109, 280
ApoI RAATTY 1 cut(s) 32
AspA2I CCTAGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 136, 328
AvrII CCTAGG 1 cut(s) 131
BanI GGYRCC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 96, 292
BfaI CTAG 2 cut(s) 132, 248
BisI GCNGC 2 cut(s) 110, 281
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 2 cut(s) 111, 282
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 4 cut(s) 81, 134, 189, 232
BpmI CTGGAG 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 82, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse3DI GCAATG 2 cut(s) 119, 154
BseDI CCNNGG 2 cut(s) 82, 131
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 2 cut(s) 119, 154
BseMII CTCAG 1 cut(s) 291
BseXI GCAGC 2 cut(s) 96, 292
BsgI GTGCAG 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 137
BspACI CCGC 2 cut(s) 76, 346
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 74
BspQI GCTCTTC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 119, 154
BssECI CCNNGG 2 cut(s) 82, 131
BssT1I CCWWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 49
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 71, 329
BstDEI CTNAG 1 cut(s) 300
BstMWI GCNNNNNNNGC 4 cut(s) 22, 75, 84, 106
BstNSI RCATGY 1 cut(s) 346
BstV1I GCAGC 2 cut(s) 96, 292
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 71, 329
Csp6I GTAC 1 cut(s) 202
CviAII CATG 2 cut(s) 88, 343
CviJI RGCY 7 cut(s) 16, 25, 69, 100, 109, 251, 283
CviKI_1 RGCY 7 cut(s) 16, 25, 69, 100, 109, 251, 283
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 91, 346
FaiI YATR 3 cut(s) 89, 273, 344
FatI CATG 2 cut(s) 87, 342
FauI CCCGC 1 cut(s) 339
Fnu4HI GCNGC 2 cut(s) 110, 281
Fsp4HI GCNGC 2 cut(s) 110, 281
FspBI CTAG 2 cut(s) 132, 248
GluI GCNGC 2 cut(s) 110, 281
GsuI CTGGAG 1 cut(s) 47
Hin1II CATG 2 cut(s) 91, 346
HinfI GANTC 2 cut(s) 118, 127
HphI GGTGA 2 cut(s) 136, 328
Hpy166II GTNNAC 2 cut(s) 52, 340
Hpy188I TCNGA 2 cut(s) 106, 189
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 2 cut(s) 52, 340
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4V TGCA 7 cut(s) 94, 112, 147, 152, 180, 280, 327
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 75, 84, 106
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 2 cut(s) 91, 346
LguI GCTCTTC 1 cut(s) 6
LpnPI CCDG 6 cut(s) 11, 55, 107, 150, 303, 313
Lsp1109I GCAGC 2 cut(s) 96, 292
LweI GCATC 4 cut(s) 81, 134, 189, 232
MaeI CTAG 2 cut(s) 132, 248
MboII GAAGA 1 cut(s) 23
MluCI AATT 2 cut(s) 32, 332
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 4 cut(s) 22, 77, 236, 295
MslI CAYNNNNRTG 1 cut(s) 165
MwoI GCNNNNNNNGC 4 cut(s) 22, 75, 84, 106
NlaIII CATG 2 cut(s) 91, 346
NlaIV GGNNCC 1 cut(s) 74
NspI RCATGY 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 118, 127
PkrI GCNGC 2 cut(s) 111, 282
PspN4I GGNNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 165
SapI GCTCTTC 1 cut(s) 6
SatI GCNGC 2 cut(s) 110, 281
SetI ASST 9 cut(s) 18, 102, 111, 137, 194, 228, 278, 285, 318
SfaNI GCATC 4 cut(s) 81, 134, 189, 232
SmiMI CAYNNNNRTG 1 cut(s) 165
Sse9I AATT 2 cut(s) 32, 332
SsiI CCGC 2 cut(s) 76, 346
SspMI CTAG 2 cut(s) 132, 248
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 49
TasI AATT 2 cut(s) 32, 332
TfiI GAWTC 2 cut(s) 118, 127
TscAI CASTG 1 cut(s) 65
TseI GCWGC 2 cut(s) 109, 280
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 1 cut(s) 65
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 346
XmaJI CCTAGG 1 cut(s) 131
XspI CTAG 2 cut(s) 132, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.