Rroxscaffold_3G00240120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000165
Physical Location & Seq
Reverse (-)
31777296 .. 31791299
14004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240120.1

Sequence Viewer

Length: 507 bp
ATGGTAACTTTGACAGCCTCTCGCAACCTCGGAGACACCTTGCAACAAAGAGGCGCGAGCCCCAACCCCAAAGCTGATATCTTTCGCCGCATAATTCCTATTGCATATAATCCTACCACCAATCGGTTTCTTGATGCAAGCCAAGACAATCAAGAAAACGTGATTGGTTCTTCTTATAATCCAAGAGCTCCACTTCATGTGCCAGCATTTAATCCTCACTTTGAAAAATCTATGTACAAGCATTTGGTAACTAGCAGCAGCTTAAACGGGCTAAACTCGTTAAGACAAGTCCTTGTTTTTGTTACGACAGGAATTGAGAAGCTTATACATGGTTGTGAGCTTGTAGTTGATGCAAGCGGCAGCACCGGGCGGCAGTGTGGCGGCGCACCCGACGAGAACTTTGAGGACGAGGCGTACGGTCGGGTTTCGGTTGCCTTAGGGGTTATGATGCATGAGGGACCGACAGGTGGTGAGGCCCCGTTAGGTGTTGTAGCGACACCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.02

Weight (kDa)

6.18

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccII CGCG 1 cut(s) 56
AciI CCGC 4 cut(s) 88, 357, 370, 381
AfaI GTAC 2 cut(s) 236, 416
AfiI CCNNNNNNNGG 2 cut(s) 123, 467
AgsI TTSAA 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AluBI AGCT 5 cut(s) 74, 188, 261, 322, 340
AluI AGCT 5 cut(s) 74, 188, 261, 322, 340
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 255, 258, 360
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AspLEI GCGC 2 cut(s) 56, 386
AspS9I GGNCC 2 cut(s) 458, 475
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 458
AxyI CCTNAGG 1 cut(s) 436
BanII GRGCYC 2 cut(s) 62, 190
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 3 cut(s) 267, 270, 372
BcnI CCSGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 1 cut(s) 252
BisI GCNGC 7 cut(s) 88, 256, 259, 358, 361, 371, 382
BlsI GCNGC 7 cut(s) 89, 257, 260, 359, 362, 372, 383
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 458
BmgT120I GGNCC 2 cut(s) 458, 475
BmiI GGNNCC 2 cut(s) 459, 477
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 3 cut(s) 124, 340, 438
BpuMI CCSGG 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 467
Bse21I CCTNAGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 123, 467
BseXI GCAGC 3 cut(s) 267, 270, 372
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 1 cut(s) 476
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 1 cut(s) 366
BsiWI CGTACG 1 cut(s) 414
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 123, 467
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 1 cut(s) 476
Bsp1286I GDGCHC 2 cut(s) 62, 190
Bsp1407I TGTACA 1 cut(s) 234
BspACI CCGC 4 cut(s) 88, 357, 370, 381
BspANI GGCC 1 cut(s) 476
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 459, 477
BsrGI TGTACA 1 cut(s) 234
BssECI CCNNGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 4 cut(s) 58, 139, 204, 355
BstDEI CTNAG 1 cut(s) 436
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 2 cut(s) 56, 386
BstMAI GTCTC 1 cut(s) 27
BstMCI CGRYCG 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 365
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 3 cut(s) 267, 270, 372
Bsu36I CCTNAGG 1 cut(s) 436
BsuRI GGCC 1 cut(s) 476
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 4 cut(s) 58, 139, 204, 355
CfoI GCGC 2 cut(s) 56, 386
Cfr13I GGNCC 2 cut(s) 458, 475
Csp6I GTAC 2 cut(s) 235, 415
CviAII CATG 3 cut(s) 197, 329, 452
CviQI GTAC 2 cut(s) 235, 415
DdeI CTNAG 1 cut(s) 436
Ecl136II GAGCTC 1 cut(s) 188
Eco24I GRGCYC 2 cut(s) 62, 190
Eco32I GATATC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 475
EcoRV GATATC 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 62, 190
FaeI CATG 3 cut(s) 200, 332, 455
FaqI GGGAC 1 cut(s) 471
FatI CATG 3 cut(s) 196, 328, 451
Fnu4HI GCNGC 7 cut(s) 88, 256, 259, 358, 361, 371, 382
FriOI GRGCYC 2 cut(s) 62, 190
Fsp4HI GCNGC 7 cut(s) 88, 256, 259, 358, 361, 371, 382
FspBI CTAG 1 cut(s) 252
GlaI GCGC 2 cut(s) 55, 385
GluI GCNGC 7 cut(s) 88, 256, 259, 358, 361, 371, 382
HaeIII GGCC 1 cut(s) 476
HapII CCGG 1 cut(s) 366
HhaI GCGC 2 cut(s) 56, 386
Hin1II CATG 3 cut(s) 200, 332, 455
Hin6I GCGC 2 cut(s) 54, 384
HinP1I GCGC 2 cut(s) 54, 384
HindIII AAGCTT 1 cut(s) 320
HpaII CCGG 1 cut(s) 366
HphI GGTGA 1 cut(s) 482
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 131, 152
Hpy99I CGWCG 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 5 cut(s) 43, 104, 137, 353, 451
HpyF3I CTNAG 1 cut(s) 436
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 3 cut(s) 200, 332, 455
HspAI GCGC 2 cut(s) 54, 384
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 4 cut(s) 216, 294, 379, 450
Lsp1109I GCAGC 3 cut(s) 267, 270, 372
LweI GCATC 3 cut(s) 124, 340, 438
MaeI CTAG 1 cut(s) 252
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 3 cut(s) 4, 247, 301
MboII GAAGA 1 cut(s) 162
MhlI GDGCHC 2 cut(s) 62, 190
MluCI AATT 2 cut(s) 93, 312
MnlI CCTC 8 cut(s) 28, 38, 44, 225, 397, 403, 448, 466
Mph1103I ATGCAT 1 cut(s) 453
MseI TTAA 3 cut(s) 210, 263, 281
MslI CAYNNNNRTG 1 cut(s) 333
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 56
NciI CCSGG 1 cut(s) 367
NlaIII CATG 3 cut(s) 200, 332, 455
NlaIV GGNNCC 2 cut(s) 459, 477
NsiI ATGCAT 1 cut(s) 453
Pfl23II CGTACG 1 cut(s) 414
PkrI GCNGC 7 cut(s) 89, 257, 260, 359, 362, 372, 383
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 190
PspLI CGTACG 1 cut(s) 414
PspN4I GGNNCC 2 cut(s) 459, 477
PspPI GGNCC 2 cut(s) 458, 475
RsaI GTAC 2 cut(s) 236, 416
RsaNI GTAC 2 cut(s) 235, 415
RseI CAYNNNNRTG 1 cut(s) 333
SacI GAGCTC 1 cut(s) 190
SaqAI TTAA 3 cut(s) 210, 263, 281
SatI GCNGC 7 cut(s) 88, 256, 259, 358, 361, 371, 382
Sau96I GGNCC 2 cut(s) 458, 475
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 2 cut(s) 62, 190
SfaNI GCATC 3 cut(s) 124, 340, 438
SinI GGWCC 1 cut(s) 458
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 2 cut(s) 93, 312
SsiI CCGC 4 cut(s) 88, 357, 370, 381
SspMI CTAG 1 cut(s) 252
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 1 cut(s) 365
TaaI ACNGT 1 cut(s) 419
TaiI ACGT 1 cut(s) 162
TaqII GACCGA 1 cut(s) 475
TasI AATT 2 cut(s) 93, 312
TatI WGTACW 1 cut(s) 234
TauI GCSGC 4 cut(s) 90, 360, 373, 384
Tru1I TTAA 3 cut(s) 210, 263, 281
Tru9I TTAA 3 cut(s) 210, 263, 281
TscAI CASTG 1 cut(s) 380
TseI GCWGC 3 cut(s) 255, 258, 360
TspDTI ATGAA 1 cut(s) 185
TspRI CASTG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 458
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.