Rh2BG273400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000165
Physical Location & Seq
Forward (+)
29705447 .. 29706986
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG273400.1

Sequence Viewer

Length: 939 bp
ATGTTAAGGAGTGCAGCCAAGGTTTATACTAATAAAATGTTTCAGCTTTTTGAAACAGAATTCTATGGCTGTATGGGAGTTAGACTAAAAGAAGTTTCCAGCCGGGATGGAGTTTATATATATCAAGCCATTGAAGATGGTCGTCAAAGTGTGCACAAGATTGAATATAATTCTACATCCTTGAACATTAATTGTTCTTGTAAGTCATTTGAGTCGCTTGGAATCTTGTGTCGTCATGCTTTGAAGGTGTTTGATATGAATAATATCACTACTTTACCCACTCAGTATATCTTGAAGAGGTGGACTAAAGAAGCAAAGAAAGGGATTGTGGTTAGCAATAATACATGTAAAGGAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCGCCTTAGCGAATTGATGCATGAAGGAAATAGTCTGTATGACATAGCCTCACTGACCGGTTCAGGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGCAATGAAGCGCCTTGAAAAAGATAAGGACACTATCTACGTGTTGGAAAATTTGAAGAAACTTGGTGACCAATCTGACTCTGGAATTCCTAGTAATGAGATACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAACGGAAGAAGAGAACAAAAGAACAAGAAAGTCAAGAAAACAATGATCCAAAAGCTCCAAATCATGTGTCTACATCTAATCATCACTTTGGTGTACTTAACACCTCATTTTATAATCAGGGAACTTTAAGTTGGCCTTTTGGACATCCCAATCCATGTTTTAGTTATGGTCAGATACCTTTCTCAAACCAGAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAGCTACAACTCTAACTACAAATACTACACTCAGACAACAACCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

312

Amino Acids

35.13

Weight (kDa)

9.28

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 62 - 85 4.5e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 774
AccI GTMKAC 1 cut(s) 731
AclWI GGATC 2 cut(s) 477, 701
AcsI RAATTY 5 cut(s) 59, 364, 532, 567, 853
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 2 cut(s) 454, 756
AflIII ACRYGT 2 cut(s) 344, 522
AgeI ACCGGT 1 cut(s) 443
AhlI ACTAGT 1 cut(s) 586
AjiI CACGTC 1 cut(s) 646
AjuI GAANNNNNNNTTGG 2 cut(s) 775, 807
AleI CACNNNNGTG 1 cut(s) 750
AluBI AGCT 3 cut(s) 46, 716, 893
AluI AGCT 3 cut(s) 46, 716, 893
Alw21I GWGCWC 1 cut(s) 156
Alw44I GTGCAC 1 cut(s) 152
AlwI GGATC 2 cut(s) 477, 701
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 1 cut(s) 794
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 5 cut(s) 59, 364, 532, 567, 853
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
AseI ATTAAT 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 443
AspLEI GCGC 2 cut(s) 390, 495
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 560
BaeGI GKGCMC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 101, 131
BcnI CCSGG 1 cut(s) 104
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 4 cut(s) 378, 573, 587, 633
BfoI RGCGCY 1 cut(s) 496
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 646
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 393
Bpu10I CCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 523
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 443
Bse118I RCCGGY 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 492
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 3 cut(s) 112, 176, 805
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 2 cut(s) 296, 934
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 796
BshTI ACCGGT 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 103, 444
BsnI GGCC 1 cut(s) 796
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 469, 706
BspANI GGCC 1 cut(s) 796
BspCNI CTCAG 2 cut(s) 295, 933
BspPI GGATC 2 cut(s) 477, 701
BsrDI GCAATG 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 443
BssAI RCCGGY 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 469, 706
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 2 cut(s) 290, 665
BstBAI YACGTR 1 cut(s) 523
BstDEI CTNAG 4 cut(s) 282, 392, 920, 933
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 3 cut(s) 112, 176, 805
BstH2I RGCGCY 1 cut(s) 496
BstHHI GCGC 2 cut(s) 390, 495
BstKTI GATC 2 cut(s) 472, 709
BstMBI GATC 2 cut(s) 469, 706
BstNSI RCATGY 1 cut(s) 348
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 1 cut(s) 796
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 3 cut(s) 112, 176, 805
BtsIMutI CAGTG 1 cut(s) 437
CaiI CAGNNNCTG 1 cut(s) 455
CfoI GCGC 2 cut(s) 390, 495
Cfr10I RCCGGY 1 cut(s) 443
Csp6I GTAC 2 cut(s) 453, 755
CspAI ACCGGT 1 cut(s) 443
CviAII CATG 5 cut(s) 236, 345, 407, 725, 816
CviJI RGCY 9 cut(s) 17, 46, 69, 102, 128, 434, 716, 796, 893
CviKI_1 RGCY 9 cut(s) 17, 46, 69, 102, 128, 434, 716, 796, 893
CviQI GTAC 2 cut(s) 453, 755
DdeI CTNAG 4 cut(s) 282, 392, 920, 933
DpnI GATC 2 cut(s) 471, 708
DpnII GATC 2 cut(s) 469, 706
DraIII CACNNNGTG 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 290, 665
EarI CTCTTC 2 cut(s) 290, 665
Eco130I CCWWGG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 548
EcoRI GAATTC 4 cut(s) 59, 364, 567, 853
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 5 cut(s) 239, 348, 410, 728, 819
FalI AAGNNNNNCTT 2 cut(s) 781, 813
FatI CATG 5 cut(s) 235, 344, 406, 724, 815
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 3 cut(s) 119, 163, 792
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 4 cut(s) 378, 573, 587, 633
GlaI GCGC 2 cut(s) 389, 494
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 496
HaeIII GGCC 1 cut(s) 796
HapII CCGG 2 cut(s) 103, 444
HhaI GCGC 2 cut(s) 390, 495
Hin1II CATG 5 cut(s) 239, 348, 410, 728, 819
Hin6I GCGC 2 cut(s) 388, 493
HinP1I GCGC 2 cut(s) 388, 493
HinfI GANTC 6 cut(s) 212, 222, 560, 595, 636, 880
HpaII CCGG 2 cut(s) 103, 444
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 4 cut(s) 154, 303, 732, 755
Hpy188I TCNGA 4 cut(s) 559, 834, 879, 923
Hpy188III TCNNGA 3 cut(s) 292, 564, 695
Hpy8I GTNNAC 4 cut(s) 154, 303, 732, 755
HpyAV CCTTC 2 cut(s) 238, 404
HpyCH4IV ACGT 2 cut(s) 522, 645
HpyCH4V TGCA 5 cut(s) 14, 154, 406, 608, 887
HpyF3I CTNAG 4 cut(s) 282, 392, 920, 933
HpySE526I ACGT 2 cut(s) 522, 645
Hsp92II CATG 5 cut(s) 239, 348, 410, 728, 819
HspAI GCGC 2 cut(s) 388, 493
Kzo9I GATC 2 cut(s) 469, 706
LmnI GCTCC 1 cut(s) 721
LpnPI CCDG 8 cut(s) 112, 116, 435, 457, 549, 764, 863, 903
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 393
MaeI CTAG 4 cut(s) 378, 573, 587, 633
MaeII ACGT 2 cut(s) 522, 645
MaeIII GTNAC 1 cut(s) 548
MalI GATC 2 cut(s) 471, 708
MboI GATC 2 cut(s) 469, 706
MboII GAAGA 5 cut(s) 146, 307, 550, 679, 682
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 9 cut(s) 59, 169, 190, 364, 398, 459, 532, 567, 853
MlyI GAGTC 2 cut(s) 221, 554
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 5 cut(s) 291, 445, 475, 642, 775
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 5 cut(s) 5, 189, 476, 759, 788
MslI CAYNNNNRTG 1 cut(s) 750
MspI CCGG 2 cut(s) 103, 444
MspR9I CCNGG 1 cut(s) 104
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 469, 706
NlaIII CATG 5 cut(s) 239, 348, 410, 728, 819
NmuCI GTSAC 1 cut(s) 548
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 348
OliI CACNNNNGTG 1 cut(s) 750
PciI ACATGT 1 cut(s) 344
PfeI GAWTC 4 cut(s) 222, 595, 636, 880
PinAI ACCGGT 1 cut(s) 443
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 220, 554
PpsI GAGTC 2 cut(s) 220, 554
Ppu21I YACGTR 1 cut(s) 523
PscI ACATGT 1 cut(s) 344
PshBI ATTAAT 1 cut(s) 189
PsiI TTATAA 1 cut(s) 774
PspEI GGTNACC 1 cut(s) 548
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 2 cut(s) 454, 756
RsaNI GTAC 2 cut(s) 453, 755
RseI CAYNNNNRTG 1 cut(s) 750
SaqAI TTAA 5 cut(s) 5, 189, 476, 759, 788
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 469, 706
SchI GAGTC 2 cut(s) 221, 554
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 750
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 9 cut(s) 59, 169, 190, 364, 398, 459, 532, 567, 853
SspMI CTAG 4 cut(s) 378, 573, 587, 633
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 2 cut(s) 525, 648
TasI AATT 9 cut(s) 59, 169, 190, 364, 398, 459, 532, 567, 853
TatI WGTACW 1 cut(s) 754
TfiI GAWTC 4 cut(s) 222, 595, 636, 880
Tru1I TTAA 5 cut(s) 5, 189, 476, 759, 788
Tru9I TTAA 5 cut(s) 5, 189, 476, 759, 788
TscAI CASTG 1 cut(s) 444
TseFI GTSAC 1 cut(s) 548
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 548
TspDTI ATGAA 4 cut(s) 272, 423, 503, 638
TspGWI ACGGA 1 cut(s) 679
TspRI CASTG 1 cut(s) 444
VneI GTGCAC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 5 cut(s) 59, 364, 532, 567, 853
XceI RCATGY 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 560
XmiI GTMKAC 1 cut(s) 731
XspI CTAG 4 cut(s) 378, 573, 587, 633
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.