Rh6BG257100

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000165
Physical Location & Seq
Forward (+)
47060152 .. 47064043
3892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG257100.1

Sequence Viewer

Length: 2376 bp
ATGGATAATGAGATGATTGAATTCGATATCGGGTTGGGAGGCCGGGAGGGGGATGATGATTTTGTCGAAATTGAGCACCCGGTCGAAGATGAAGAGATGGTTGATAGCCCTCTACTTGGCAGTGCTAGTGGCAGTGTCAATGGCGTTGGGTTTAGTGGAGGGAGTGGTGAAATTTACCTTCCTGAGGGGGACCTATTGGACCTTGAACCATATGATGGCATGGAGTTTGAGTCTGAAGAGGCTGCCAAGGCATTTTACAATTCGTATGCCCGCCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGCTCCAGGCGCGATGGAGCGATCATACAGAGGCAATTTGTTTGTGCGAAAGAGGGTTTTCGGAATTTGAATGAGAAGCGCACCAAGGATAGAGAGATCAAGCGCCCGCGGACTGTCACTAGAGTAGGATGCAAAGCGTCCTTGTCTGTAAAGATGCAAGATTCGGGGAAATGGGTTGTGTCTGGATTTGTTAAAGAGCATAATCATGAGTTGGTTCCCCCTGATCAGGTGCATTGCCTTCGGTCGCACAGGCAGATATCTGGTCCTGCTAAGACTTTGATTGATACATTGCAGGCAGCTGGAATGGGTCCCAGAAGGATCATGTCAGCACTGATTAAAGAATATGGTGGAATAAGCAAAGTTGGATTTACAGAGGTCGACTGTAGGAATTACATGAGGAATAATCGCCGGAGGAGCTTGGATGGGGATATTCAGATGCTATTGGATTATTTGAGACAAATGCAAGCAGATAACCAGAACTTCTTCTATGCTGTTCAGGGCGATGAGGATCAGGCCACGGGCAATGTCATCTGGGCTGATCCAAAGGCAAAGACAAACTACAATTACTTTTGTGATACTGTTACTTTTGATACTACCTACAGGTCAAACAGGTACCGTTTGCCCTTTGCACCTATCACAGGGATAAACCACCATGGGCAGCCTGTATTGTTTGGTTGTGCTTTTCTGATAAATGAGTCTGAAGCATCATTTGTTTGGCTGTTTAAAACATGGCTTATGGCAATGTCAGGCCGCCCTCCGTTGTCAATTACCACTGACCATGATCCTGTGATACAGTCAGCTATCATGCAGGTCTTCCCACAGACCCGTCACCGATTCTGCAAATGGCACATTTTCAAAAAATGCCAGGAGAAACTATCCCATGTGTTTCTTCAACATCCAAGTTTTGAAGCAGACTTTCACAAATGTGTCAATTTGACTGAGTCAATAGAAGAGTTTGAGTCTTGCTGGTTGTCTCTTGTTGATAGATATGATCTCAGGGATCATGAATGGCTTCAAACAGTATACTCTGCTCGCAGGCAATGGGTCCCTGTCTATCTGCGCGACACCTTTTTTGCAGAAATGTCCATAACGCAGAGAAGTGATAGTATGAACTCATATTTTGATGGTTATGTGAATGCTTCAACAAATCTGAGTCAGTTCTTTAAGCTCTATGAGAAAGCTCTGGAGAGTCGCAATGAGAAGGAAGTGAAAGCAGATTTTGATACTATGAACACTTCCCCAGTTTTGAAGACCCCATCTCCAATGGAAAAGCAAGCCTCTGAGTTTTATACAAAAAAAATATTTATGAGGTTTCAAGAGGAGCTAGTTGGGACATTAACTTTCACAGCATCCAAGGGCGATGATGATGGGGTGGTCATCTCATATCAAGTAGCAAAGTTCGGGGAGGACCATAAAGCATATTATGTTAAACTAAATGTTCTGGACATGATGGCAAGTTGTAGTTGCCAGATGTTTGAGTTTTCAGGTCTTCTTTGCAGACATGTATTAGCAGTCTTTCGAGTGACCAATGTGTTGACTCTGCCATCTCATTACATATTGAAACGATGGACAAGAAATGCCAAGAGCAGCGTTATGTTAGAAGATCGTTCTAGTGATGTATATACCAATTATCTAGAATCTCATACTGTTAGATACAATACTTTACGCCATGAGGCCTTTAAATTTGTAGATGGAGCAAAGTCTTCAGAAACCTACGACCTTCCCCTGGATGCTTTAAAAGAAGCTGCAAAAAAAGTAGCTCATGCAATTAAGAATGATGGGAGAAATGTCATGGTGAATGGGCATATCAGGGGAAATTTGGCTGGTGGTGGAAGTCGGGCCAATTACACCATTGGGGATCATGATGGGAGTTCTGGCCAGAATTTGTCTGAGGATGATATGGACAAAAAAATTCGGGAACTTACATATGAGCTGGAGTGTGCTAATCGAAAGTGTGAAGTTTATCGGGCTAACCTACTTTCACTTTTGAAAGATATTGAGGATCATAAGTTGCAATTGTCAATTAAAGTGGAAAACATTAAGATTAGCATGAAAGACGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

791

Amino Acids

90.44

Weight (kDa)

6.19

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 85 - 176 7.7e-34 FAR1 DNA-binding domain
MULE PF10551 297 - 390 1.2e-30 MULE transposase domain
SWIM PF04434 585 - 610 9.5e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1108
Acc65I GGTACC 1 cut(s) 921
AccB1I GGYRCC 1 cut(s) 921
AccB7I CCANNNNNTGG 1 cut(s) 215
AccI GTMKAC 2 cut(s) 687, 1332
AccII CGCG 3 cut(s) 321, 418, 1371
AciI CCGC 4 cut(s) 271, 416, 418, 1060
AclWI GGATC 7 cut(s) 635, 825, 842, 1085, 1317, 2175, 2319
AcoI YGGCCR 1 cut(s) 2185
AcsI RAATTY 7 cut(s) 20, 171, 373, 1991, 2125, 2191, 2220
AcuI CTGAAG 3 cut(s) 255, 1029, 1998
AfaI GTAC 2 cut(s) 289, 923
AfiI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2035
AflIII ACRYGT 1 cut(s) 1810
AjnI CCWGG 3 cut(s) 314, 1173, 2034
AleI CACNNNNGTG 1 cut(s) 1233
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 757, 1287
AlwI GGATC 7 cut(s) 635, 825, 842, 1085, 1317, 2175, 2319
AoxI GGCC 6 cut(s) 40, 822, 1057, 1983, 2148, 2185
ApeKI GCWGC 5 cut(s) 242, 605, 967, 1896, 2054
ApoI RAATTY 7 cut(s) 20, 171, 373, 1991, 2125, 2191, 2220
ArsI GACNNNNNNTTYG 2 cut(s) 1364, 1396
Asp700I GAANNNNTTC 2 cut(s) 791, 1320
Asp718I GGTACC 1 cut(s) 921
AspLEI GCGC 4 cut(s) 321, 390, 414, 1371
AspS9I GGNCC 7 cut(s) 190, 199, 572, 617, 1354, 1717, 2148
AsuC2I CCSGG 2 cut(s) 44, 80
AsuHPI GGTGA 3 cut(s) 179, 1130, 2116
AvaII GGWCC 6 cut(s) 190, 199, 572, 617, 1354, 1717
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 2187
BanI GGYRCC 1 cut(s) 921
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 4 cut(s) 1114, 1565, 1790, 2004
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 229, 617, 979, 1908, 2041
BceAI ACGGC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 3 cut(s) 316, 1175, 2036
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 2 cut(s) 44, 80
BcoDI GTCTC 2 cut(s) 757, 1287
BfaI CTAG 5 cut(s) 126, 429, 1634, 1920, 1943
BfmI CTRYAG 2 cut(s) 691, 907
BfoI RGCGCY 1 cut(s) 415
BfuAI ACCTGC 1 cut(s) 1108
BisI GCNGC 6 cut(s) 243, 606, 968, 1060, 1897, 2055
BlsI GCNGC 6 cut(s) 244, 607, 969, 1061, 1898, 2056
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 5 cut(s) 44, 80, 316, 1175, 2036
Bme18I GGWCC 6 cut(s) 190, 199, 572, 617, 1354, 1717
BmgT120I GGNCC 7 cut(s) 190, 199, 572, 617, 1354, 1717, 2148
BmiI GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
BmrFI CCNGG 5 cut(s) 44, 80, 316, 1175, 2036
BmrI ACTGGG 1 cut(s) 1544
BmsI GCATC 6 cut(s) 428, 453, 735, 1022, 1667, 2029
BmuI ACTGGG 1 cut(s) 1544
BpiI GAAGAC 4 cut(s) 1114, 1565, 1790, 2004
BpmI CTGGAG 3 cut(s) 298, 1514, 2264
BpuMI CCSGG 2 cut(s) 44, 80
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1662, 2034
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 1552, 1582
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2035
Bse1I ACTGG 1 cut(s) 1550
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 6 cut(s) 541, 596, 838, 1056, 1355, 1510
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 3 cut(s) 316, 1175, 2036
BseDI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1662, 2034
BseGI GGATG 7 cut(s) 58, 443, 736, 1204, 1658, 2044, 2209
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2035
BseMI GCAATG 6 cut(s) 541, 596, 838, 1056, 1355, 1510
BseMII CTCAG 6 cut(s) 174, 1239, 1318, 1451, 1581, 2190
BseNI ACTGG 1 cut(s) 1550
BseRI GAGGAG 3 cut(s) 292, 736, 1643
BseXI GCAGC 5 cut(s) 229, 617, 979, 1908, 2041
Bsh1236I CGCG 3 cut(s) 321, 418, 1371
Bsh1285I CGRYCG 2 cut(s) 84, 554
BshFI GGCC 6 cut(s) 42, 824, 1059, 1985, 2150, 2187
BshNI GGYRCC 1 cut(s) 921
BsiEI CGRYCG 2 cut(s) 84, 554
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 3 cut(s) 43, 80, 718
BslFI GGGAC 4 cut(s) 203, 603, 1340, 1654
BslI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2035
BsmAI GTCTC 2 cut(s) 757, 1287
BsmFI GGGAC 4 cut(s) 203, 603, 1340, 1654
BsmI GAATGC 1 cut(s) 1450
BsnI GGCC 6 cut(s) 42, 824, 1059, 1985, 2150, 2187
Bsp1286I GDGCHC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 4 cut(s) 271, 416, 418, 1060
BspANI GGCC 6 cut(s) 42, 824, 1059, 1985, 2150, 2187
BspCNI CTCAG 6 cut(s) 175, 1240, 1317, 1452, 1582, 2191
BspFNI CGCG 3 cut(s) 321, 418, 1371
BspHI TCATGA 3 cut(s) 514, 1312, 2170
BspLI GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
BspMI ACCTGC 1 cut(s) 1108
BspPI GGATC 7 cut(s) 635, 825, 842, 1085, 1317, 2175, 2319
BspT107I GGYRCC 1 cut(s) 921
BsrDI GCAATG 6 cut(s) 541, 596, 838, 1056, 1355, 1510
BsrI ACTGG 1 cut(s) 1550
BssECI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1662, 2034
BssNAI GTATAC 1 cut(s) 1333
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 4 cut(s) 246, 393, 961, 1662
Bst1107I GTATAC 1 cut(s) 1333
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 316, 1175, 2036
Bst4CI ACNGT 7 cut(s) 424, 692, 889, 926, 1104, 1330, 1957
Bst6I CTCTTC 3 cut(s) 87, 231, 1254
BstC8I GCNNGC 7 cut(s) 271, 416, 603, 774, 1342, 1346, 1584
BstDEI CTNAG 7 cut(s) 183, 579, 1248, 1304, 1460, 1590, 2199
BstDSI CCRYGG 3 cut(s) 416, 825, 961
BstENI CCTNNNNNAGG 2 cut(s) 182, 945
BstF5I GGATG 7 cut(s) 58, 443, 736, 1204, 1658, 2044, 2209
BstFNI CGCG 3 cut(s) 321, 418, 1371
BstH2I RGCGCY 1 cut(s) 415
BstHHI GCGC 4 cut(s) 321, 390, 414, 1371
BstMAI GTCTC 2 cut(s) 757, 1287
BstMCI CGRYCG 2 cut(s) 84, 554
BstMWI GCNNNNNNNGC 3 cut(s) 248, 318, 723
BstNI CCWGG 3 cut(s) 316, 1175, 2036
BstNSI RCATGY 1 cut(s) 1814
BstSCI CCNGG 5 cut(s) 42, 78, 314, 1173, 2034
BstSFI CTRYAG 2 cut(s) 691, 907
BstUI CGCG 3 cut(s) 321, 418, 1371
BstV1I GCAGC 5 cut(s) 229, 617, 979, 1908, 2041
BstV2I GAAGAC 4 cut(s) 1114, 1565, 1790, 2004
BstZ17I GTATAC 1 cut(s) 1333
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 6 cut(s) 42, 824, 1059, 1985, 2150, 2187
BtgI CCRYGG 3 cut(s) 416, 825, 961
BtgZI GCGATG 3 cut(s) 336, 825, 1683
BtsCI GGATG 7 cut(s) 58, 443, 736, 1204, 1658, 2044, 2209
BtsI GCAGTG 2 cut(s) 127, 139
BtsIMutI CAGTG 4 cut(s) 127, 139, 638, 1080
BveI ACCTGC 1 cut(s) 1108
Cac8I GCNNGC 7 cut(s) 271, 416, 603, 774, 1342, 1346, 1584
CciI TCATGA 3 cut(s) 514, 1312, 2170
CfoI GCGC 4 cut(s) 321, 390, 414, 1371
Cfr13I GGNCC 7 cut(s) 190, 199, 572, 617, 1354, 1717, 2148
Cfr42I CCGCGG 1 cut(s) 419
CseI GACGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 288, 922
CspCI CAANNNNNGTGG 2 cut(s) 2319, 2354
CviQI GTAC 2 cut(s) 288, 922
DdeI CTNAG 7 cut(s) 183, 579, 1248, 1304, 1460, 1590, 2199
DraI TTTAAA 3 cut(s) 1033, 1990, 2046
EaeI YGGCCR 1 cut(s) 2185
Eam1104I CTCTTC 3 cut(s) 87, 231, 1254
EarI CTCTTC 3 cut(s) 87, 231, 1254
Eco130I CCWWGG 4 cut(s) 246, 393, 961, 1662
Eco147I AGGCCT 1 cut(s) 1985
Eco32I GATATC 2 cut(s) 28, 567
Eco47I GGWCC 6 cut(s) 190, 199, 572, 617, 1354, 1717
Eco57I CTGAAG 3 cut(s) 255, 1029, 1998
Eco81I CCTNAGG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 182, 945
EcoO109I RGGNCCY 3 cut(s) 190, 617, 1354
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 314, 1173, 2034
EcoRV GATATC 2 cut(s) 28, 567
EcoT14I CCWWGG 4 cut(s) 246, 393, 961, 1662
ErhI CCWWGG 4 cut(s) 246, 393, 961, 1662
FaqI GGGAC 4 cut(s) 203, 603, 1340, 1654
FauI CCCGC 2 cut(s) 278, 423
FauNDI CATATG 2 cut(s) 211, 2236
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 2 cut(s) 687, 1332
Fnu4HI GCNGC 6 cut(s) 243, 606, 968, 1060, 1897, 2055
FokI GGATG 7 cut(s) 65, 450, 743, 1191, 1645, 2051, 2216
Fsp4HI GCNGC 6 cut(s) 243, 606, 968, 1060, 1897, 2055
FspBI CTAG 5 cut(s) 126, 429, 1634, 1920, 1943
GlaI GCGC 4 cut(s) 320, 389, 413, 1370
GluI GCNGC 6 cut(s) 243, 606, 968, 1060, 1897, 2055
GsuI CTGGAG 3 cut(s) 298, 1514, 2264
HaeII RGCGCY 1 cut(s) 415
HaeIII GGCC 6 cut(s) 42, 824, 1059, 1985, 2150, 2187
HapII CCGG 3 cut(s) 43, 80, 718
HgaI GACGC 1 cut(s) 435
HhaI GCGC 4 cut(s) 321, 390, 414, 1371
Hin6I GCGC 4 cut(s) 319, 388, 412, 1369
HinP1I GCGC 4 cut(s) 319, 388, 412, 1369
HincII GTYRAC 2 cut(s) 688, 1845
HindII GTYRAC 2 cut(s) 688, 1845
HpaII CCGG 3 cut(s) 43, 80, 718
HphI GGTGA 3 cut(s) 179, 1130, 2116
Hpy166II GTNNAC 3 cut(s) 688, 1333, 1845
Hpy188I TCNGA 9 cut(s) 235, 372, 744, 996, 1009, 1461, 1591, 2017, 2200
Hpy8I GTNNAC 3 cut(s) 688, 1333, 1845
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 5 cut(s) 188, 557, 618, 1504, 2039
HpyCH4III ACNGT 7 cut(s) 424, 692, 889, 926, 1104, 1330, 1957
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 318, 723
HpyF3I CTNAG 7 cut(s) 183, 579, 1248, 1304, 1460, 1590, 2199
HspAI GCGC 4 cut(s) 319, 388, 412, 1369
KflI GGGWCCC 2 cut(s) 617, 1354
KpnI GGTACC 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 532
KspI CCGCGG 1 cut(s) 419
LmnI GCTCC 6 cut(s) 305, 317, 326, 723, 1630, 2003
Lsp1109I GCAGC 5 cut(s) 229, 617, 979, 1908, 2041
LweI GCATC 6 cut(s) 428, 453, 735, 1022, 1667, 2029
MaeI CTAG 5 cut(s) 126, 429, 1634, 1920, 1943
MaeIII GTNAC 4 cut(s) 424, 889, 1136, 1831
MfeI CAATTG 1 cut(s) 2324
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 2187
MluNI TGGCCA 1 cut(s) 2187
MlyI GAGTC 7 cut(s) 239, 1013, 1259, 1277, 1471, 1507, 1840
MmeI TCCRAC 1 cut(s) 652
Mox20I TGGCCA 1 cut(s) 2187
MroXI GAANNNNTTC 2 cut(s) 791, 1320
MscI TGGCCA 1 cut(s) 2187
MslI CAYNNNNRTG 2 cut(s) 513, 1233
Msp20I TGGCCA 1 cut(s) 2187
MspA1I CMGCKG 2 cut(s) 418, 608
MspI CCGG 3 cut(s) 43, 80, 718
MspR9I CCNGG 5 cut(s) 44, 80, 316, 1175, 2036
MunI CAATTG 1 cut(s) 2324
Mva1269I GAATGC 1 cut(s) 1450
MvaI CCWGG 3 cut(s) 316, 1175, 2036
MvnI CGCG 3 cut(s) 321, 418, 1371
MwoI GCNNNNNNNGC 3 cut(s) 248, 318, 723
NciI CCSGG 2 cut(s) 44, 80
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 2 cut(s) 211, 2236
NlaIV GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
NmuCI GTSAC 3 cut(s) 424, 1136, 1831
NspI RCATGY 1 cut(s) 1814
OliI CACNNNNGTG 1 cut(s) 1233
PagI TCATGA 3 cut(s) 514, 1312, 2170
PceI AGGCCT 1 cut(s) 1985
PciI ACATGT 1 cut(s) 1810
PctI GAATGC 1 cut(s) 1450
PdmI GAANNNNTTC 2 cut(s) 791, 1320
PfeI GAWTC 3 cut(s) 470, 1143, 1946
PflFI GACNNNGTC 1 cut(s) 1249
PflMI CCANNNNNTGG 1 cut(s) 215
PkrI GCNGC 6 cut(s) 244, 607, 969, 1061, 1898, 2056
PleI GAGTC 7 cut(s) 238, 1012, 1258, 1276, 1470, 1506, 1840
PpsI GAGTC 7 cut(s) 238, 1012, 1258, 1276, 1470, 1506, 1840
PpuMI RGGWCCY 3 cut(s) 190, 617, 1354
PscI ACATGT 1 cut(s) 1810
Psp5II RGGWCCY 3 cut(s) 190, 617, 1354
Psp6I CCWGG 3 cut(s) 314, 1173, 2034
PspGI CCWGG 3 cut(s) 314, 1173, 2034
PspN4I GGNNCC 7 cut(s) 191, 525, 618, 619, 923, 1355, 1356
PspPI GGNCC 7 cut(s) 190, 199, 572, 617, 1354, 1717, 2148
PspPPI RGGWCCY 3 cut(s) 190, 617, 1354
PsyI GACNNNGTC 1 cut(s) 1249
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 289, 923
RsaNI GTAC 2 cut(s) 288, 922
RseI CAYNNNNRTG 2 cut(s) 513, 1233
SacII CCGCGG 1 cut(s) 419
SalI GTCGAC 1 cut(s) 686
SatI GCNGC 6 cut(s) 243, 606, 968, 1060, 1897, 2055
Sau96I GGNCC 7 cut(s) 190, 199, 572, 617, 1354, 1717, 2148
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 7 cut(s) 239, 1013, 1259, 1277, 1471, 1507, 1840
ScrFI CCNGG 5 cut(s) 44, 80, 316, 1175, 2036
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 6 cut(s) 428, 453, 735, 1022, 1667, 2029
SfcI CTRYAG 2 cut(s) 691, 907
Sfr303I CCGCGG 1 cut(s) 419
SgrBI CCGCGG 1 cut(s) 419
SinI GGWCC 6 cut(s) 190, 199, 572, 617, 1354, 1717
SmiMI CAYNNNNRTG 2 cut(s) 513, 1233
SseBI AGGCCT 1 cut(s) 1985
SsiI CCGC 4 cut(s) 271, 416, 418, 1060
SspI AATATT 1 cut(s) 1611
SspMI CTAG 5 cut(s) 126, 429, 1634, 1920, 1943
StuI AGGCCT 1 cut(s) 1985
StyD4I CCNGG 5 cut(s) 42, 78, 314, 1173, 2034
StyI CCWWGG 4 cut(s) 246, 393, 961, 1662
TaaI ACNGT 7 cut(s) 424, 692, 889, 926, 1104, 1330, 1957
TaqI TCGA 6 cut(s) 24, 66, 84, 687, 1828, 2257
TaqII GACCGA 1 cut(s) 540
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 3 cut(s) 470, 1143, 1946
TscAI CASTG 4 cut(s) 127, 139, 645, 1087
TseFI GTSAC 3 cut(s) 424, 1136, 1831
TseI GCWGC 5 cut(s) 242, 605, 967, 1896, 2054
Tsp45I GTSAC 3 cut(s) 424, 1136, 1831
TspDTI ATGAA 5 cut(s) 105, 1329, 1433, 1553, 2375
TspGWI ACGGA 1 cut(s) 1056
TspRI CASTG 4 cut(s) 127, 139, 645, 1087
Tth111I GACNNNGTC 1 cut(s) 1249
Van91I CCANNNNNTGG 1 cut(s) 215
VpaK11BI GGWCC 6 cut(s) 190, 199, 572, 617, 1354, 1717
XagI CCTNNNNNAGG 2 cut(s) 182, 945
XapI RAATTY 7 cut(s) 20, 171, 373, 1991, 2125, 2191, 2220
XbaI TCTAGA 1 cut(s) 1942
XceI RCATGY 1 cut(s) 1814
XmiI GTMKAC 2 cut(s) 687, 1332
XmnI GAANNNNTTC 2 cut(s) 791, 1320
XspI CTAG 5 cut(s) 126, 429, 1634, 1920, 1943
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.