FvH4_7g04941

Protein FAR1-RELATED SEQUENCE 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000165
Physical Location & Seq
Reverse (-)
5346033 .. 5354531
8499 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04941.t3

Sequence Viewer

Length: 2556 bp
ATGGACTCTGAAATCTTCTTAGATGTTGAAGCGGAAGACAGGGAATCTGATAAAGGTGTAAAACAAAATGCAAATGATAATTTTGCAGGGAGAGAAATAATCACACAGGATGAGGATGGGAATACTAAACCATATGTCGGAATGGAGTTTGAATCAGAGGATGCTGCCAAGGCTCTCTATGATGCGTATGCCAGGTGTGCTGGTTTTAGCACCCATGTTGGTCAGTTTACTCGTAATAAGCCCGATGGACCAATAGTGACATGGGAGTTTGCATGTTCAAGAGAGGTATTCAGAAAAAAGAATGTCGAAAGTTGCAATGCTATGCTACGTGTAGAGAGAAAGGATGCAAACACTTGGGTTGCCACTAAGTTTATTGAGGACCACAACCATTCGATGGAAAGTCCAAATAAAGTCCATTACCTTCGACCGCGTAGACACTTTGCAGGTGCTGCAAAGAATACAGCTGAGACTTTGGATGTCTCTTCTGATGCTTATGTCTCTATGGATGGGAATCATGCCCCTTATGAACCAAATCGTGGAGGTAGGAGTGTCTCTCCTGTTGAACCAAATCCTCCTGCCAGGAATGTTGCGCCTATTAACTACACAGGGCCTTCTAGCCGGAAGAGAACACTTGGAAGAGATGCCCAAAATCTTCTAAACTATTTCAAGAAGATGCAAGCTGAAAATCCTGGATTTTATTATGCCATACAGCTTGATGATGAAAACCGCATGACTAATGTTTTCTGGACTGATGCGAGATCGAGGACTACTTACAACTACTTTGGAGATGCTGTAATTTTTGATACAATGTATCGACCAAATCAGTACCAGGTGCCATTTGCTCCTTTTACCGGTGTAAATCATCATGGCCAGATGGTATTGTTTGGCTGTGCACTACTTCTAGATGAGTCTGAGTCTTCCTTTACTTGGCTGTTTAAGACATGGCTTTCTGCAATGAATGATCGGCCTCCTATTTCTATAACTACTGACCAGGATAGAGCAATACAAGTGGCTGTAGCGCAGGTATTCCCAGATACGCGCCACTGCATATGCAAGTGGCACATTTTAAGAGAAGGCCAAGAAAGACTGGCTCATATATATCTTGCTAATCCTTCTTTTTATGGAGAGCTGTATAGCTGCATCAACTTTTCAGAGAAAATTGAGGATTTTGAATCATCATGGCTGTCCCTTCTTGATAGGTATGACCTTCGGAGAAATGATTGGCTACAGGCAGTGTATAATGCTCGAAAGCAGTGGGCCCCAGTTTATTTTCGTGGGACTTTCTTTGCTGCAATTTCCTCAAATCAGGGAGTTAGATCTTTCTTTGATGGCTATGTGAATCAACAGACGAGTATACCTCTGTTTTTTAAGCAGTATGAAAGGGCTCTGGAGCATGCATTAGAAAAAGAAATAGAAGCAGATTATGATACCATTTGCACCACACCAGTACTGAAGACACCATCACCAATGGAACAACAGGCAGCTAACTTGTATACAAAAAAAGTATTTGCCAAGTTTCAGGAGGAATTAGTTGAAACTTTTGTCTATACTGCAAATAGGATAGATGAAGATGGGCTTGTCAGTAAATACAGGGTTGCAAAGTATGAACATGATGACAAGGCTTATATAGTTGAATTAAATGTCTCTGAGATGAAAGCAAGCTGCAGCTGTCAGATGTTTGAACATGCTGGCATCCTCTGTAGACATATTTTGACTGTCTTCACCGTCACAAATGTTCTTACCCTTCCATCACAGTACATATTGAAGCGATGGACAAGGAATGCCAAATCTTGGGTTGGAGTAGATGAACAGATCTCAGATCCGCAAGGTGTTGAGATACTCACTGTGCGGTTCAACAATTTATGTCAGGAAGCCATTAAATATGCGGAGGAAGGTGCAGTTGCTGTAGAGACTTACAATGCAGCAATGATTGCTCTACGAGACAGTGGGAAAAGGATTGCTGATATGAAGAAAAATGTTGCTAAAGCTGCACCTCCTAGCTCTCATGATAGTGGAAGTATACAGGAAGAAAGTATTAAAAAAGTTCCTTTGGCATTTGGCGAAATGGTCCCCCCATTGTGGCCTTGGCAAGAGGCATTGCCACATCGATTTAATCTTAATGATGTTGGAGTTCCAGTTACTGGAATAAATCAGCCTAGCATGGCGGGTTCTATACAACCTGATGGTGGGCATCCTGATAATACGGTAGTTTATACTTGTTTCAAGTCTATGACATGGGTCATAGAAAATAAGAATTCAACATCAGCTGGCAAAGTTGCTGTTATTAACTTGAAGCTGCAAGATTATGGCAAGAACCCGGCAGGAGAAACAGATGTACAATTTAGGGTAACTAGGGTTACACTAGAGCCTATGTTAAGATCGATGGCCTACATTGGTCAGCAACTTTCTGCACCAGCCAACAGAGTTGCTGTTATCAATCTCAAGCTACAAGATACAAATACAGCTTCTGGAGAAACAGAAGTCAAGTTTCAAGTTTCCAGAGATACACTAGATTCCATGTTGAGATCAATGGTTTACATCCATGAACAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

852

Amino Acids

96.58

Weight (kDa)

5.73

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 59 - 132 9.6e-12 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 225 - 347 2e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 265 - 356 1.8e-28 MULE transposase domain
SWIM PF04434 546 - 576 1.5e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 2 cut(s) 434, 1012
AccB1I GGYRCC 1 cut(s) 832
AccB7I CCANNNNNTGG 4 cut(s) 394, 536, 1791, 2141
AccI GTMKAC 5 cut(s) 433, 1354, 1493, 1702, 2020
AccII CGCG 2 cut(s) 430, 1039
AciI CCGC 7 cut(s) 32, 428, 727, 1823, 1849, 1886, 2165
AclWI GGATC 1 cut(s) 1814
AcoI YGGCCR 1 cut(s) 868
AcsI RAATTY 1 cut(s) 2254
AcuI CTGAAG 1 cut(s) 1472
AfaI GTAC 4 cut(s) 827, 1449, 1757, 2337
AfiI CCNNNNNNNGG 9 cut(s) 137, 394, 536, 851, 927, 1791, 2079, 2141, 2186
AflIII ACRYGT 1 cut(s) 328
AgeI ACCGGT 1 cut(s) 851
AjnI CCWGG 5 cut(s) 191, 578, 688, 828, 990
Alw21I GWGCWC 1 cut(s) 895
Alw26I GTCTC 7 cut(s) 461, 484, 502, 556, 1648, 1904, 1935
Alw44I GTGCAC 1 cut(s) 891
AlwI GGATC 1 cut(s) 1814
AlwNI CAGNNNCTG 4 cut(s) 449, 1904, 2141, 2468
AoxI GGCC 7 cut(s) 608, 868, 965, 1075, 1257, 2081, 2385
ApaI GGGCCC 1 cut(s) 1261
ApaLI GTGCAC 1 cut(s) 891
ApoI RAATTY 1 cut(s) 2254
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 3 cut(s) 592, 1021, 1041
AspS9I GGNCC 6 cut(s) 248, 379, 608, 1257, 1258, 2068
AsuC2I CCSGG 1 cut(s) 2318
AsuHPI GGTGA 2 cut(s) 1455, 1714
AvaII GGWCC 3 cut(s) 248, 379, 2068
BaeGI GKGCMC 2 cut(s) 895, 1261
BalI TGGCCA 1 cut(s) 870
BanI GGYRCC 1 cut(s) 832
BanII GRGCYC 2 cut(s) 1261, 1387
BbsI GAAGAC 4 cut(s) 42, 909, 1460, 1711
Bbv12I GWGCWC 1 cut(s) 895
BciT130I CCWGG 5 cut(s) 193, 580, 690, 830, 992
BcnI CCSGG 1 cut(s) 2318
BcoDI GTCTC 7 cut(s) 461, 484, 502, 556, 1648, 1904, 1935
BfaI CTAG 7 cut(s) 615, 902, 1998, 2157, 2352, 2363, 2510
BfmI CTRYAG 5 cut(s) 1014, 1226, 1663, 1699, 1905
BfuAI ACCTGC 2 cut(s) 434, 1012
BglII AGATCT 2 cut(s) 1316, 1812
BmcAI AGTACT 1 cut(s) 1449
Bme1390I CCNGG 6 cut(s) 193, 580, 690, 830, 992, 2318
Bme18I GGWCC 3 cut(s) 248, 379, 2068
BmgT120I GGNCC 6 cut(s) 248, 379, 608, 1257, 1258, 2068
BmiI GGNNCC 4 cut(s) 834, 1259, 1260, 2070
BmrFI CCNGG 6 cut(s) 193, 580, 690, 830, 992, 2318
BmrI ACTGGG 1 cut(s) 1256
BmuI ACTGGG 1 cut(s) 1256
BoxI GACNNNNGTC 1 cut(s) 2237
BpiI GAAGAC 4 cut(s) 42, 909, 1460, 1711
BplI GAGNNNNNCTC 4 cut(s) 538, 570, 1342, 1374
BpmI CTGGAG 2 cut(s) 1409, 2490
BpuEI CTTGAG 1 cut(s) 2426
BpuMI CCSGG 1 cut(s) 2318
Bsa29I ATCGAT 2 cut(s) 2107, 2381
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 168, 2084
BsaWI WCCGGW 1 cut(s) 851
BsaXI ACNNNNNCTCC 4 cut(s) 777, 807, 2121, 2151
Bsc4I CCNNNNNNNGG 9 cut(s) 137, 394, 536, 851, 927, 1791, 2079, 2141, 2186
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 5 cut(s) 1092, 1262, 1445, 2135, 2146
Bse3DI GCAATG 4 cut(s) 322, 960, 1932, 2096
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 5 cut(s) 193, 580, 690, 830, 992
BseCI ATCGAT 2 cut(s) 2107, 2381
BseDI CCNNGG 2 cut(s) 168, 2084
BseGI GGATG 9 cut(s) 115, 121, 166, 349, 481, 511, 1692, 2191, 2538
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 9 cut(s) 137, 394, 536, 851, 927, 1791, 2079, 2141, 2186
BseMI GCAATG 4 cut(s) 322, 960, 1932, 2096
BseMII CTCAG 4 cut(s) 456, 903, 1638, 1830
BseNI ACTGG 5 cut(s) 1092, 1262, 1445, 2135, 2146
BseSI GKGCMC 2 cut(s) 895, 1261
BsgI GTGCAG 3 cut(s) 1917, 1974, 2394
Bsh1236I CGCG 2 cut(s) 430, 1039
Bsh1285I CGRYCG 1 cut(s) 428
BshFI GGCC 7 cut(s) 610, 870, 967, 1077, 1259, 2083, 2387
BshNI GGYRCC 1 cut(s) 832
BshTI ACCGGT 1 cut(s) 851
BshVI ATCGAT 2 cut(s) 2107, 2381
BsiEI CGRYCG 1 cut(s) 428
BsiHKAI GWGCWC 1 cut(s) 895
BsiSI CCGG 3 cut(s) 619, 852, 2318
BslFI GGGAC 3 cut(s) 1171, 1291, 2054
BslI CCNNNNNNNGG 9 cut(s) 137, 394, 536, 851, 927, 1791, 2079, 2141, 2186
BsmAI GTCTC 7 cut(s) 461, 484, 502, 556, 1648, 1904, 1935
BsmFI GGGAC 3 cut(s) 1171, 1291, 2054
BsmI GAATGC 1 cut(s) 1786
BsnI GGCC 7 cut(s) 610, 870, 967, 1077, 1259, 2083, 2387
Bsp120I GGGCCC 1 cut(s) 1257
Bsp1286I GDGCHC 3 cut(s) 895, 1261, 1387
Bsp1407I TGTACA 1 cut(s) 2335
Bsp143I GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
BspACI CCGC 7 cut(s) 32, 428, 727, 1823, 1849, 1886, 2165
BspANI GGCC 7 cut(s) 610, 870, 967, 1077, 1259, 2083, 2387
BspCNI CTCAG 4 cut(s) 457, 904, 1639, 1829
BspDI ATCGAT 2 cut(s) 2107, 2381
BspFNI CGCG 2 cut(s) 430, 1039
BspHI TCATGA 1 cut(s) 2005
BspLI GGNNCC 4 cut(s) 834, 1259, 1260, 2070
BspMAI CTGCAG 1 cut(s) 1667
BspMI ACCTGC 2 cut(s) 434, 1012
BspPI GGATC 1 cut(s) 1814
BspT107I GGYRCC 1 cut(s) 832
BsrDI GCAATG 4 cut(s) 322, 960, 1932, 2096
BsrFI RCCGGY 1 cut(s) 851
BsrGI TGTACA 1 cut(s) 2335
BsrI ACTGG 5 cut(s) 1092, 1262, 1445, 2135, 2146
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 2 cut(s) 168, 2084
BssMI GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
BssNAI GTATAC 3 cut(s) 1355, 1494, 2021
BssT1I CCWWGG 2 cut(s) 168, 2084
Bst1107I GTATAC 3 cut(s) 1355, 1494, 2021
Bst2UI CCWGG 5 cut(s) 193, 580, 690, 830, 992
Bst4CI ACNGT 6 cut(s) 1717, 1726, 1755, 1846, 1946, 2206
Bst6I CTCTTC 3 cut(s) 487, 617, 631
BstAPI GCANNNNNTGC 2 cut(s) 449, 1931
BstAUI TGTACA 1 cut(s) 2335
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 5 cut(s) 678, 1395, 1660, 1690, 2269
BstDEI CTNAG 6 cut(s) 19, 366, 465, 912, 1647, 1816
BstF5I GGATG 9 cut(s) 115, 121, 166, 349, 481, 511, 1692, 2191, 2538
BstFNI CGCG 2 cut(s) 430, 1039
BstHHI GCGC 3 cut(s) 592, 1021, 1041
BstKTI GATC 7 cut(s) 761, 964, 1319, 1815, 1822, 2381, 2528
BstMAI GTCTC 7 cut(s) 461, 484, 502, 556, 1648, 1904, 1935
BstMBI GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
BstMCI CGRYCG 1 cut(s) 428
BstMWI GCNNNNNNNGC 5 cut(s) 170, 197, 449, 1931, 1988
BstNI CCWGG 5 cut(s) 193, 580, 690, 830, 992
BstNSI RCATGY 3 cut(s) 276, 1397, 1688
BstPAI GACNNNNGTC 1 cut(s) 2237
BstSCI CCNGG 6 cut(s) 191, 578, 688, 828, 990, 2316
BstSFI CTRYAG 5 cut(s) 1014, 1226, 1663, 1699, 1905
BstSLI GKGCMC 2 cut(s) 895, 1261
BstUI CGCG 2 cut(s) 430, 1039
BstV2I GAAGAC 4 cut(s) 42, 909, 1460, 1711
BstX2I RGATCY 3 cut(s) 1316, 1812, 1819
BstYI RGATCY 3 cut(s) 1316, 1812, 1819
BstZ17I GTATAC 3 cut(s) 1355, 1494, 2021
Bsu15I ATCGAT 2 cut(s) 2107, 2381
BsuRI GGCC 7 cut(s) 610, 870, 967, 1077, 1259, 2083, 2387
BsuTUI ATCGAT 2 cut(s) 2107, 2381
BtgZI GCGATG 1 cut(s) 1783
BtsCI GGATG 9 cut(s) 115, 121, 166, 349, 481, 511, 1692, 2191, 2538
BtsI GCAGTG 3 cut(s) 1042, 1239, 1259
BtsIMutI CAGTG 5 cut(s) 1042, 1239, 1259, 1842, 1951
BveI ACCTGC 2 cut(s) 434, 1012
Cac8I GCNNGC 5 cut(s) 678, 1395, 1660, 1690, 2269
CaiI CAGNNNCTG 4 cut(s) 449, 1904, 2141, 2468
CciI TCATGA 1 cut(s) 2005
CfoI GCGC 3 cut(s) 592, 1021, 1041
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 6 cut(s) 248, 379, 608, 1257, 1258, 2068
ClaI ATCGAT 2 cut(s) 2107, 2381
CsiI ACCWGGT 1 cut(s) 828
Csp6I GTAC 4 cut(s) 826, 1448, 1756, 2336
CspAI ACCGGT 1 cut(s) 851
CspCI CAANNNNNGTGG 2 cut(s) 990, 1025
CviQI GTAC 4 cut(s) 826, 1448, 1756, 2336
DdeI CTNAG 6 cut(s) 19, 366, 465, 912, 1647, 1816
DpnI GATC 7 cut(s) 760, 963, 1318, 1814, 1821, 2380, 2527
DpnII GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
EaeI YGGCCR 1 cut(s) 868
Eam1104I CTCTTC 3 cut(s) 487, 617, 631
EarI CTCTTC 3 cut(s) 487, 617, 631
Eco130I CCWWGG 2 cut(s) 168, 2084
Eco24I GRGCYC 2 cut(s) 1261, 1387
Eco47I GGWCC 3 cut(s) 248, 379, 2068
Eco57I CTGAAG 1 cut(s) 1472
EcoO109I RGGNCCY 2 cut(s) 608, 1258
EcoRI GAATTC 1 cut(s) 2254
EcoRII CCWGG 5 cut(s) 191, 578, 688, 828, 990
EcoT14I CCWWGG 2 cut(s) 168, 2084
EcoT22I ATGCAT 1 cut(s) 1399
EcoT38I GRGCYC 2 cut(s) 1261, 1387
ErhI CCWWGG 2 cut(s) 168, 2084
FalI AAGNNNNNCTT 2 cut(s) 1560, 1592
FaqI GGGAC 3 cut(s) 1171, 1291, 2054
FauI CCCGC 1 cut(s) 2158
FauNDI CATATG 2 cut(s) 133, 1049
FblI GTMKAC 5 cut(s) 433, 1354, 1493, 1702, 2020
FokI GGATG 9 cut(s) 122, 128, 173, 356, 488, 518, 1679, 2178, 2525
FriOI GRGCYC 2 cut(s) 1261, 1387
FspBI CTAG 7 cut(s) 615, 902, 1998, 2157, 2352, 2363, 2510
GlaI GCGC 3 cut(s) 591, 1020, 1040
GsuI CTGGAG 2 cut(s) 1409, 2490
HaeIII GGCC 7 cut(s) 610, 870, 967, 1077, 1259, 2083, 2387
HapII CCGG 3 cut(s) 619, 852, 2318
HhaI GCGC 3 cut(s) 592, 1021, 1041
Hin6I GCGC 3 cut(s) 590, 1019, 1039
HinP1I GCGC 3 cut(s) 590, 1019, 1039
HinfI GANTC 9 cut(s) 5, 44, 152, 511, 908, 914, 1172, 1339, 2513
HpaII CCGG 3 cut(s) 619, 852, 2318
HphI GGTGA 2 cut(s) 1455, 1714
Hpy166II GTNNAC 8 cut(s) 228, 434, 893, 1355, 1494, 1703, 2021, 2536
Hpy8I GTNNAC 8 cut(s) 228, 434, 893, 1355, 1494, 1703, 2021, 2536
HpyAV CCTTC 8 cut(s) 431, 621, 1067, 1122, 1199, 1217, 1754, 1886
HpyCH4III ACNGT 6 cut(s) 1717, 1726, 1755, 1846, 1946, 2206
HpyCH4IV ACGT 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 197, 449, 1931, 1988
HpyF3I CTNAG 6 cut(s) 19, 366, 465, 912, 1647, 1816
HpySE526I ACGT 1 cut(s) 328
HspAI GCGC 3 cut(s) 590, 1019, 1039
Kzo9I GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
LmnI GCTCC 2 cut(s) 847, 1390
MabI ACCWGGT 1 cut(s) 828
MaeI CTAG 7 cut(s) 615, 902, 1998, 2157, 2352, 2363, 2510
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 5 cut(s) 256, 1726, 2137, 2347, 2356
MalI GATC 7 cut(s) 760, 963, 1318, 1814, 1821, 2380, 2527
MboI GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
MflI RGATCY 3 cut(s) 1316, 1812, 1819
MhlI GDGCHC 3 cut(s) 895, 1261, 1387
MlsI TGGCCA 1 cut(s) 870
MluCI AATT 9 cut(s) 79, 795, 1158, 1293, 1526, 1634, 1858, 2254, 2339
MluNI TGGCCA 1 cut(s) 870
MlyI GAGTC 2 cut(s) 917, 923
MmeI TCCRAC 3 cut(s) 118, 1777, 2107
Mox20I TGGCCA 1 cut(s) 870
Mph1103I ATGCAT 1 cut(s) 1399
MscI TGGCCA 1 cut(s) 870
MslI CAYNNNNRTG 1 cut(s) 2010
Msp20I TGGCCA 1 cut(s) 870
MspA1I CMGCKG 3 cut(s) 464, 1668, 2267
MspI CCGG 3 cut(s) 619, 852, 2318
MspR9I CCNGG 6 cut(s) 193, 580, 690, 830, 992, 2318
Mva1269I GAATGC 1 cut(s) 1786
MvaI CCWGG 5 cut(s) 193, 580, 690, 830, 992
MvnI CGCG 2 cut(s) 430, 1039
MwoI GCNNNNNNNGC 5 cut(s) 170, 197, 449, 1931, 1988
NciI CCSGG 1 cut(s) 2318
NdeI CATATG 2 cut(s) 133, 1049
NdeII GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
NlaIV GGNNCC 4 cut(s) 834, 1259, 1260, 2070
NmuCI GTSAC 2 cut(s) 256, 1726
NsiI ATGCAT 1 cut(s) 1399
NspI RCATGY 3 cut(s) 276, 1397, 1688
PaeI GCATGC 1 cut(s) 1397
PagI TCATGA 1 cut(s) 2005
PaqCI CACCTGC 1 cut(s) 434
PctI GAATGC 1 cut(s) 1786
PfeI GAWTC 6 cut(s) 44, 152, 511, 1172, 1339, 2513
PflMI CCANNNNNTGG 4 cut(s) 394, 536, 1791, 2141
PfoI TCCNGGA 1 cut(s) 688
PinAI ACCGGT 1 cut(s) 851
PleI GAGTC 2 cut(s) 916, 922
PpsI GAGTC 2 cut(s) 916, 922
Ppu21I YACGTR 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 2237
Psp6I CCWGG 5 cut(s) 191, 578, 688, 828, 990
PspGI CCWGG 5 cut(s) 191, 578, 688, 828, 990
PspN4I GGNNCC 4 cut(s) 834, 1259, 1260, 2070
PspOMI GGGCCC 1 cut(s) 1257
PspPI GGNCC 6 cut(s) 248, 379, 608, 1257, 1258, 2068
PstI CTGCAG 1 cut(s) 1667
PstNI CAGNNNCTG 4 cut(s) 449, 1904, 2141, 2468
PsuI RGATCY 3 cut(s) 1316, 1812, 1819
PvuII CAGCTG 3 cut(s) 464, 1668, 2267
RsaI GTAC 4 cut(s) 827, 1449, 1757, 2337
RsaNI GTAC 4 cut(s) 826, 1448, 1756, 2336
RseI CAYNNNNRTG 1 cut(s) 2010
Sau3AI GATC 7 cut(s) 758, 961, 1316, 1812, 1819, 2378, 2525
Sau96I GGNCC 6 cut(s) 248, 379, 608, 1257, 1258, 2068
ScaI AGTACT 1 cut(s) 1449
SchI GAGTC 2 cut(s) 917, 923
ScrFI CCNGG 6 cut(s) 193, 580, 690, 830, 992, 2318
SduI GDGCHC 3 cut(s) 895, 1261, 1387
SexAI ACCWGGT 1 cut(s) 828
SfcI CTRYAG 5 cut(s) 1014, 1226, 1663, 1699, 1905
SinI GGWCC 3 cut(s) 248, 379, 2068
SmiMI CAYNNNNRTG 1 cut(s) 2010
SmlI CTYRAG 1 cut(s) 2441
SmoI CTYRAG 1 cut(s) 2441
SphI GCATGC 1 cut(s) 1397
Sse9I AATT 9 cut(s) 79, 795, 1158, 1293, 1526, 1634, 1858, 2254, 2339
SsiI CCGC 7 cut(s) 32, 428, 727, 1823, 1849, 1886, 2165
SspMI CTAG 7 cut(s) 615, 902, 1998, 2157, 2352, 2363, 2510
StyD4I CCNGG 6 cut(s) 191, 578, 688, 828, 990, 2316
StyI CCWWGG 2 cut(s) 168, 2084
TaaI ACNGT 6 cut(s) 1717, 1726, 1755, 1846, 1946, 2206
TaiI ACGT 1 cut(s) 331
TaqI TCGA 8 cut(s) 306, 392, 424, 761, 814, 1246, 2107, 2381
TasI AATT 9 cut(s) 79, 795, 1158, 1293, 1526, 1634, 1858, 2254, 2339
TatI WGTACW 3 cut(s) 1447, 1755, 2335
TfiI GAWTC 6 cut(s) 44, 152, 511, 1172, 1339, 2513
TscAI CASTG 5 cut(s) 1049, 1239, 1259, 1849, 1951
TseFI GTSAC 2 cut(s) 256, 1726
Tsp45I GTSAC 2 cut(s) 256, 1726
TspDTI ATGAA 9 cut(s) 540, 735, 971, 1392, 1581, 1620, 1667, 1821, 1982
TspRI CASTG 5 cut(s) 1049, 1239, 1259, 1849, 1951
Van91I CCANNNNNTGG 4 cut(s) 394, 536, 1791, 2141
VneI GTGCAC 1 cut(s) 891
VpaK11BI GGWCC 3 cut(s) 248, 379, 2068
XapI RAATTY 1 cut(s) 2254
XbaI TCTAGA 1 cut(s) 901
XceI RCATGY 3 cut(s) 276, 1397, 1688
XcmI CCANNNNNNNNNTGG 2 cut(s) 258, 2082
XmiI GTMKAC 5 cut(s) 433, 1354, 1493, 1702, 2020
XspI CTAG 7 cut(s) 615, 902, 1998, 2157, 2352, 2363, 2510
ZrmI AGTACT 1 cut(s) 1449
Zsp2I ATGCAT 1 cut(s) 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.