RchiOBHm_Chr7g0228321

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000165
Physical Location & Seq
Reverse (-)
51630540 .. 51634221
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20452

Sequence Viewer

Length: 1038 bp
ATGGAGCTCATTAAATTTGTTCATCACTATGAGAAAAACATTGAAGAGAATCGTTTAGCAGAGTTGGAAGATGACCAATGTTGCAAAAATGGTGCACCACGTCCAAAAGTATGGAGTAAAATGTTAAGGAGTGCAGCCAAGGGTTATTCTAACAAAATGTTTCAACTTTTTGAAACAGAATTCTATGGCTGTATGGGAGTTAGACTAAAAGAAGTTTCCAGCCGGGATGGAGTTTATATATATCAAGCCATTGAAGATGGTCGTCAAAGTGTGCACAAGATTGAATATAATTCTACATCCTTGAACATTAATTGTTCTTGTGAGTCATTTGAGTCGCTTAGAATCTTGTGTTGTCATGCTTTGACGGTGTTTGATATGAATAATATCACTACTTTAGCCACTCAGTATATCTTGAAGAGGTGGACTAAAGAAGCAAAGAAAGGGATTGTGGTTAGCAATAATACATGTGGAGGAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCGCCTTAGCGAATTGATGCATGAAGGAAATAGTGTGTATGACATAGCCTCACTGACCTGTTCAGGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGCAATGAAGAGCCTTGAAAAAGATAAGGACACTATCTACGTGTTGGAAAATTTGAAGAAACTTGGTGACCAATCTAACTCTGGCATTCCTAGTAATGAGATACTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAATGGAAGAAGAGAACAAAAGAACAAGAAAGCCAAGAAAACAATGATCCAAAAGCTCCAAATCATGTGTCTACATCTAATCATCAATTTGGTATACTTAACACCTCATTTTATAATCAGGGAATTTTAAGTTGGCCTTTTGGACATCCCAATCCATTTTTTAGCTATGGTCAGATACCTTTCTCAAACCAAGTATGTGTGTGTGTATATATATATATTTATTTATATTTGAAATTTTTGTACATTCCTACATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

345

Amino Acids

39.45

Weight (kDa)

8.5

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 102 - 125 7.8e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 894
AccI GTMKAC 2 cut(s) 851, 874
AclWI GGATC 2 cut(s) 597, 821
AcsI RAATTY 6 cut(s) 14, 179, 484, 652, 903, 1013
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 2 cut(s) 574, 1022
AflIII ACRYGT 2 cut(s) 464, 642
AhlI ACTAGT 1 cut(s) 706
AjiI CACGTC 2 cut(s) 101, 766
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AluBI AGCT 3 cut(s) 7, 836, 945
AluI AGCT 3 cut(s) 7, 836, 945
Alw21I GWGCWC 3 cut(s) 9, 97, 276
Alw44I GTGCAC 2 cut(s) 93, 272
AlwI GGATC 2 cut(s) 597, 821
AlwNI CAGNNNCTG 1 cut(s) 575
AoxI GGCC 1 cut(s) 914
ApaLI GTGCAC 2 cut(s) 93, 272
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 6 cut(s) 14, 179, 484, 652, 903, 1013
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 510
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 680
BaeGI GKGCMC 2 cut(s) 97, 276
BanII GRGCYC 1 cut(s) 9
Bbv12I GWGCWC 3 cut(s) 9, 97, 276
BbvI GCAGC 1 cut(s) 146
BccI CCATC 2 cut(s) 221, 251
BcnI CCSGG 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 706
BfaI CTAG 4 cut(s) 498, 693, 707, 753
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 224
BmgBI CACGTC 2 cut(s) 101, 766
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 513
Bpu10I CCTNAGC 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 643
BsaJI CCNNGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 612
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 232, 296, 925
BseMI GCAATG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 97, 276
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 916
BsiHKAI GWGCWC 3 cut(s) 9, 97, 276
BsiSI CCGG 1 cut(s) 223
BsmI GAATGC 1 cut(s) 687
BsnI GGCC 1 cut(s) 916
Bsp1286I GDGCHC 3 cut(s) 9, 97, 276
Bsp1407I TGTACA 1 cut(s) 1020
Bsp143I GATC 2 cut(s) 589, 826
BspANI GGCC 1 cut(s) 916
BspCNI CTCAG 1 cut(s) 415
BspPI GGATC 2 cut(s) 597, 821
BspQI GCTCTTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 612
BsrGI TGTACA 1 cut(s) 1020
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 2 cut(s) 589, 826
BssNAI GTATAC 1 cut(s) 875
BssT1I CCWWGG 1 cut(s) 138
Bst1107I GTATAC 1 cut(s) 875
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 4 cut(s) 39, 410, 605, 785
BstAUI TGTACA 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 643
BstDEI CTNAG 3 cut(s) 338, 402, 512
BstEII GGTNACC 1 cut(s) 668
BstF5I GGATG 3 cut(s) 232, 296, 925
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 2 cut(s) 592, 829
BstMBI GATC 2 cut(s) 589, 826
BstNSI RCATGY 1 cut(s) 468
BstPI GGTNACC 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 2 cut(s) 97, 276
BstV1I GCAGC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 589
BstXI CCANNNNNNTGG 1 cut(s) 111
BstYI RGATCY 1 cut(s) 589
BstZ17I GTATAC 1 cut(s) 875
BsuRI GGCC 1 cut(s) 916
BtrI CACGTC 2 cut(s) 101, 766
BtsCI GGATG 3 cut(s) 232, 296, 925
BtsIMutI CAGTG 1 cut(s) 557
CaiI CAGNNNCTG 1 cut(s) 575
CfoI GCGC 1 cut(s) 510
Csp6I GTAC 2 cut(s) 573, 1021
CviAII CATG 4 cut(s) 356, 465, 527, 845
CviQI GTAC 2 cut(s) 573, 1021
DdeI CTNAG 3 cut(s) 338, 402, 512
DpnI GATC 2 cut(s) 591, 828
DpnII GATC 2 cut(s) 589, 826
DraIII CACNNNGTG 1 cut(s) 725
Eam1104I CTCTTC 4 cut(s) 39, 410, 605, 785
EarI CTCTTC 4 cut(s) 39, 410, 605, 785
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 138
Eco24I GRGCYC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 7
Eco91I GGTNACC 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 668
EcoRI GAATTC 2 cut(s) 179, 484
EcoT14I CCWWGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 528
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 4 cut(s) 359, 468, 530, 848
FalI AAGNNNNNCTT 2 cut(s) 901, 933
FatI CATG 4 cut(s) 355, 464, 526, 844
FblI GTMKAC 2 cut(s) 851, 874
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 3 cut(s) 239, 283, 912
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 4 cut(s) 498, 693, 707, 753
GlaI GCGC 1 cut(s) 509
GluI GCNGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 916
HapII CCGG 1 cut(s) 223
HhaI GCGC 1 cut(s) 510
Hin1II CATG 4 cut(s) 359, 468, 530, 848
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 6 cut(s) 49, 323, 332, 342, 715, 756
HpaII CCGG 1 cut(s) 223
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 5 cut(s) 95, 274, 423, 852, 875
Hpy188I TCNGA 1 cut(s) 954
Hpy188III TCNNGA 1 cut(s) 412
Hpy8I GTNNAC 5 cut(s) 95, 274, 423, 852, 875
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 100, 642, 765
HpyCH4V TGCA 6 cut(s) 84, 95, 134, 274, 526, 728
HpyF3I CTNAG 3 cut(s) 338, 402, 512
HpySE526I ACGT 3 cut(s) 100, 642, 765
Hsp92II CATG 4 cut(s) 359, 468, 530, 848
HspAI GCGC 1 cut(s) 508
Kzo9I GATC 2 cut(s) 589, 826
LguI GCTCTTC 1 cut(s) 605
LmnI GCTCC 2 cut(s) 4, 841
LpnPI CCDG 6 cut(s) 232, 236, 555, 577, 669, 884
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 513
MaeI CTAG 4 cut(s) 498, 693, 707, 753
MaeII ACGT 3 cut(s) 100, 642, 765
MaeIII GTNAC 1 cut(s) 668
MalI GATC 2 cut(s) 591, 828
MboI GATC 2 cut(s) 589, 826
MboII GAAGA 8 cut(s) 56, 80, 266, 427, 622, 670, 799, 802
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 3 cut(s) 9, 97, 276
MlyI GAGTC 2 cut(s) 332, 341
MmeI TCCRAC 2 cut(s) 45, 627
MnlI CCTC 6 cut(s) 411, 464, 565, 595, 762, 895
Mph1103I ATGCAT 1 cut(s) 528
MseI TTAA 7 cut(s) 12, 125, 309, 596, 879, 908, 1036
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 1 cut(s) 224
Mva1269I GAATGC 1 cut(s) 687
NciI CCSGG 1 cut(s) 224
NdeII GATC 2 cut(s) 589, 826
NlaIII CATG 4 cut(s) 359, 468, 530, 848
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 1 cut(s) 528
NspI RCATGY 1 cut(s) 468
PciI ACATGT 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 605
PctI GAATGC 1 cut(s) 687
PfeI GAWTC 4 cut(s) 49, 342, 715, 756
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 2 cut(s) 331, 340
PpsI GAGTC 2 cut(s) 331, 340
Ppu21I YACGTR 1 cut(s) 643
PscI ACATGT 1 cut(s) 464
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 894
Psp124BI GAGCTC 1 cut(s) 9
PspEI GGTNACC 1 cut(s) 668
PstNI CAGNNNCTG 1 cut(s) 575
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 2 cut(s) 574, 1022
RsaNI GTAC 2 cut(s) 573, 1021
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 605
SaqAI TTAA 7 cut(s) 12, 125, 309, 596, 879, 908, 1036
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 589, 826
SchI GAGTC 2 cut(s) 332, 341
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 9, 97, 276
SfaNI GCATC 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 27
SpeI ACTAGT 1 cut(s) 706
SspMI CTAG 4 cut(s) 498, 693, 707, 753
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 103, 645, 768
TatI WGTACW 1 cut(s) 1020
TfiI GAWTC 4 cut(s) 49, 342, 715, 756
Tru1I TTAA 7 cut(s) 12, 125, 309, 596, 879, 908, 1036
Tru9I TTAA 7 cut(s) 12, 125, 309, 596, 879, 908, 1036
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 5 cut(s) 11, 392, 543, 623, 758
TspRI CASTG 1 cut(s) 564
VneI GTGCAC 2 cut(s) 93, 272
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 6 cut(s) 14, 179, 484, 652, 903, 1013
XceI RCATGY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmiI GTMKAC 2 cut(s) 851, 874
XspI CTAG 4 cut(s) 498, 693, 707, 753
Zsp2I ATGCAT 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.