Rmu_co8187762.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8187762.1
OG0000165
Physical Location & Seq
Reverse (-)
14 .. 676
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8187762.1_g000001.1.cds

Sequence Viewer

Length: 663 bp
atgcgattcaaagagttggaagaggattttcgtggtagaagtgccacgcctcgtctcacaataaatagtggtgtctttaagcaagcagctactgagtatactgttagaatgtattcatttcttgaaaatgagctcatgggtatctttggggtgaggatgacagaagtcgatactgatgggaatgagtgtatttatgaagctactgaagaaggttatggaagagtctatagaattcgatttcgatatgattgttttactgctagggtttcctgttcttgtaagttatttgaatccatgggagtgttgtgtcgtcatgctctaaaagtattggagttgaaaaacttcacaagcataccagcccagtacatagtgaagagatggaccaaaggggcgaagaaggggattgtggtgagtactgatttctccaagtcaccatacaaaaaggcaaagtctgcccaatcgtcgcgcctaggtgcattgatgcacgaaggaaccaatgttttcagtataggctcattgtgtgattctggaactaggattgtcaaacagaagttagcagagacgatgcagttactcgaaggtgatgcagaaactaccaacatggttagaaatttgagaagagcagatgactcatctgtctgtgctgcggttctggatgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

220

Amino Acids

24.81

Weight (kDa)

8.79

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 635
AccI GTMKAC 1 cut(s) 98
AccII CGCG 1 cut(s) 466
AciI CCGC 1 cut(s) 647
AcsI RAATTY 2 cut(s) 231, 610
AcuI CTGAAG 1 cut(s) 225
AfaI GTAC 2 cut(s) 365, 415
AgsI TTSAA 4 cut(s) 10, 125, 290, 337
AluBI AGCT 3 cut(s) 89, 133, 200
AluI AGCT 3 cut(s) 89, 133, 200
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 59, 554
AlwNI CAGNNNCTG 1 cut(s) 92
ApeKI GCWGC 2 cut(s) 86, 644
ApoI RAATTY 2 cut(s) 231, 610
Asp700I GAANNNNTTC 2 cut(s) 112, 341
AspA2I CCTAGG 1 cut(s) 469
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 4 cut(s) 163, 421, 423, 593
AvaII GGWCC 1 cut(s) 381
AvrII CCTAGG 1 cut(s) 469
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 98, 631
BccI CCATC 2 cut(s) 170, 372
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BcoDI GTCTC 2 cut(s) 59, 554
BfaI CTAG 3 cut(s) 261, 470, 534
BfmI CTRYAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 87, 645
BlnI CCTAGG 1 cut(s) 469
BlsI GCNGC 2 cut(s) 88, 646
BmcAI AGTACT 1 cut(s) 415
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 493
BmrI ACTGGG 1 cut(s) 355
BmsI GCATC 3 cut(s) 471, 555, 574
BmuI ACTGGG 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 294, 469
Bse1I ACTGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 294, 469
BseGI GGATG 2 cut(s) 162, 661
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 98, 631
Bsh1236I CGCG 1 cut(s) 466
BsiHKAI GWGCWC 1 cut(s) 135
BsmAI GTCTC 2 cut(s) 59, 554
BsmBI CGTCTC 2 cut(s) 59, 554
Bsp1286I GDGCHC 1 cut(s) 135
Bsp19I CCATGG 1 cut(s) 294
BspACI CCGC 1 cut(s) 647
BspCNI CTCAG 1 cut(s) 85
BspFNI CGCG 1 cut(s) 466
BspLI GGNNCC 1 cut(s) 493
BspQI GCTCTTC 1 cut(s) 613
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 294, 469
BssNAI GTATAC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 294, 469
Bst1107I GTATAC 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 4 cut(s) 15, 214, 368, 613
BstAPI GCANNNNNTGC 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 93
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 2 cut(s) 162, 661
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 1 cut(s) 468
BstMAI GTCTC 2 cut(s) 59, 554
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstPAI GACNNNNGTC 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 1 cut(s) 466
BstV1I GCAGC 2 cut(s) 98, 631
BstZ17I GTATAC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 162, 661
Cac8I GCNNGC 1 cut(s) 84
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 2 cut(s) 364, 414
CviAII CATG 4 cut(s) 136, 295, 314, 601
CviJI RGCY 5 cut(s) 89, 133, 200, 359, 513
CviKI_1 RGCY 5 cut(s) 89, 133, 200, 359, 513
CviQI GTAC 2 cut(s) 364, 414
DdeI CTNAG 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 635
DseDI GACNNNNNNGTC 1 cut(s) 635
Eam1104I CTCTTC 4 cut(s) 15, 214, 368, 613
EarI CTCTTC 4 cut(s) 15, 214, 368, 613
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 294, 469
Eco24I GRGCYC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 381
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 294, 469
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 294, 469
Esp3I CGTCTC 2 cut(s) 59, 554
FaeI CATG 4 cut(s) 139, 298, 317, 604
FatI CATG 4 cut(s) 135, 294, 313, 600
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 87, 645
FokI GGATG 1 cut(s) 169
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 2 cut(s) 87, 645
FspBI CTAG 3 cut(s) 261, 470, 534
GlaI GCGC 1 cut(s) 467
GluI GCNGC 2 cut(s) 87, 645
HhaI GCGC 1 cut(s) 468
Hin1II CATG 4 cut(s) 139, 298, 317, 604
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HinfI GANTC 5 cut(s) 6, 222, 290, 524, 629
HphI GGTGA 4 cut(s) 163, 421, 423, 593
Hpy166II GTNNAC 1 cut(s) 99
Hpy188III TCNNGA 3 cut(s) 122, 528, 653
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 1 cut(s) 466
HpyAV CCTTC 4 cut(s) 203, 391, 482, 572
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 476, 484, 568, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 4 cut(s) 139, 298, 317, 604
HspAI GCGC 1 cut(s) 466
LguI GCTCTTC 1 cut(s) 613
LpnPI CCDG 5 cut(s) 283, 369, 374, 513, 638
Lsp1109I GCAGC 2 cut(s) 98, 631
LweI GCATC 3 cut(s) 471, 555, 574
MaeI CTAG 3 cut(s) 261, 470, 534
MaeIII GTNAC 2 cut(s) 429, 570
MboII GAAGA 6 cut(s) 32, 218, 231, 385, 406, 630
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 2 cut(s) 231, 610
MlyI GAGTC 2 cut(s) 231, 623
MnlI CCTC 3 cut(s) 16, 60, 147
MroXI GAANNNNTTC 2 cut(s) 112, 341
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 299
MvnI CGCG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 452
NcoI CCATGG 1 cut(s) 294
NlaIII CATG 4 cut(s) 139, 298, 317, 604
NlaIV GGNNCC 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 613
PdmI GAANNNNTTC 2 cut(s) 112, 341
PfeI GAWTC 3 cut(s) 6, 290, 524
PkrI GCNGC 2 cut(s) 88, 646
PleI GAGTC 2 cut(s) 230, 623
PpsI GAGTC 2 cut(s) 230, 623
PshAI GACNNNNGTC 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 92
RsaI GTAC 2 cut(s) 365, 415
RsaNI GTAC 2 cut(s) 364, 414
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 613
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 87, 645
Sau96I GGNCC 1 cut(s) 381
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 2 cut(s) 231, 623
SduI GDGCHC 1 cut(s) 135
SetI ASST 6 cut(s) 91, 135, 202, 214, 475, 583
SfaNI GCATC 3 cut(s) 471, 555, 574
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 2 cut(s) 231, 610
SsiI CCGC 1 cut(s) 647
SspMI CTAG 3 cut(s) 261, 470, 534
SstI GAGCTC 1 cut(s) 135
StyI CCWWGG 2 cut(s) 294, 469
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 4 cut(s) 168, 235, 241, 576
TasI AATT 2 cut(s) 231, 610
TatI WGTACW 2 cut(s) 363, 413
TfiI GAWTC 3 cut(s) 6, 290, 524
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 429
TseI GCWGC 2 cut(s) 86, 644
Tsp45I GTSAC 1 cut(s) 429
TspDTI ATGAA 2 cut(s) 105, 210
VpaK11BI GGWCC 1 cut(s) 381
XapI RAATTY 2 cut(s) 231, 610
XmaJI CCTAGG 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 98
XmnI GAANNNNTTC 2 cut(s) 112, 341
XspI CTAG 3 cut(s) 261, 470, 534
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.