RLG00000011104

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
6840242 .. 6847128
6887 bp
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UTR
Exon/CDS
Intron
RLM00000011104

Sequence Viewer

Length: 507 bp
ATGGAGGAGATTGTTGAAGAAGATGGAGAACTAAAGCTGGGAACTAAGATTGTGAATGAGCTGTTAGTAGAGGCAATGAAGCGTCTTGAGAAAGACAAGGAAACTCAGGACATGTTGGAAAATTTGAACAAAGTTGGTAACCAGTGCAACTGTGCCATTCCAGTTAATGAAGGTCATGTTTTAGATCCACCATGTGCCAAGACTAAAGGAATGACAAATGAAAGAATCAAAGACACAAAGGAGAAAAAACAACGGAAGAATAAGAAAACAAAAGATGCAAGCCAAGACAATCAAGAAAACGTGATTGATTCTTCTTATAATCCAAGAGCTCCACTTCATGTGCCAAAATTTAATCCTCACTTTGGTGTACCTCACTCCCCATTTCATAATCTGGGTAATTTAAGTCGGACTTTTGGGAATCCCAATTTCTGTTTCAATTATGGTGTTATACCTTCCTCAAATCAGAACTCCTGCTACTCTATAAGTACTAATAGAAGAGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

169

Amino Acids

19.03

Weight (kDa)

8.24

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 121, 347
AdeI CACNNNGTG 1 cut(s) 194
AfaI GTAC 2 cut(s) 369, 487
AfiI CCNNNNNNNGG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 3 cut(s) 17, 127, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 3 cut(s) 37, 61, 329
AluI AGCT 3 cut(s) 37, 61, 329
Alw21I GWGCWC 1 cut(s) 331
AlwI GGATC 1 cut(s) 179
ApoI RAATTY 2 cut(s) 121, 347
BanII GRGCYC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 331
BccI CCATC 1 cut(s) 17
BmcAI AGTACT 1 cut(s) 487
BmsI GCATC 1 cut(s) 265
BpuEI CTTGAG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse1I ACTGG 2 cut(s) 142, 161
Bse3DI GCAATG 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 119
BseNI ACTGG 2 cut(s) 142, 161
BseRI GAGGAG 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 362
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 118
BspPI GGATC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 2 cut(s) 142, 161
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 45, 105
BstEII GGTNACC 1 cut(s) 137
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 280
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 368, 486
CviAII CATG 4 cut(s) 112, 176, 192, 338
CviJI RGCY 4 cut(s) 37, 61, 282, 329
CviKI_1 RGCY 4 cut(s) 37, 61, 282, 329
CviQI GTAC 2 cut(s) 368, 486
DdeI CTNAG 2 cut(s) 45, 105
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 329
Eco91I GGTNACC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 329
EcoO65I GGTNACC 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 331
FaeI CATG 4 cut(s) 115, 179, 195, 341
FaiI YATR 9 cut(s) 113, 177, 193, 318, 339, 387, 441, 449, 482
FalI AAGNNNNNCTT 2 cut(s) 394, 426
FatI CATG 4 cut(s) 111, 175, 191, 337
FriOI GRGCYC 1 cut(s) 331
GsaI CCCAGC 1 cut(s) 41
HgaI GACGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 115, 179, 195, 341
HinfI GANTC 3 cut(s) 225, 308, 418
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 2 cut(s) 408, 465
Hpy188III TCNNGA 3 cut(s) 86, 107, 293
Hpy8I GTNNAC 1 cut(s) 368
HpyAV CCTTC 2 cut(s) 164, 462
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 2 cut(s) 147, 278
HpyF3I CTNAG 2 cut(s) 45, 105
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 4 cut(s) 115, 179, 195, 341
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 6 cut(s) 23, 92, 155, 174, 377, 484
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 5 cut(s) 29, 32, 268, 303, 507
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 5 cut(s) 121, 347, 397, 424, 436
MmeI TCCRAC 2 cut(s) 96, 386
MnlI CCTC 4 cut(s) 64, 366, 381, 466
MseI TTAA 3 cut(s) 165, 351, 401
MslI CAYNNNNRTG 1 cut(s) 363
NdeII GATC 1 cut(s) 184
NlaIII CATG 4 cut(s) 115, 179, 195, 341
NspI RCATGY 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 363
PciI ACATGT 1 cut(s) 111
PfeI GAWTC 3 cut(s) 225, 308, 418
PscI ACATGT 1 cut(s) 111
PsiI TTATAA 1 cut(s) 318
Psp124BI GAGCTC 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 137
PspFI CCCAGC 1 cut(s) 37
PsrI GAACNNNNNNTAC 2 cut(s) 458, 490
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 369, 487
RsaNI GTAC 2 cut(s) 368, 486
RseI CAYNNNNRTG 1 cut(s) 363
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 165, 351, 401
Sau3AI GATC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 487
SduI GDGCHC 1 cut(s) 331
SetI ASST 7 cut(s) 39, 63, 175, 303, 331, 373, 454
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 5 cut(s) 121, 347, 397, 424, 436
SstI GAGCTC 1 cut(s) 331
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 303
TasI AATT 5 cut(s) 121, 347, 397, 424, 436
TatI WGTACW 1 cut(s) 485
TfiI GAWTC 3 cut(s) 225, 308, 418
Tru1I TTAA 3 cut(s) 165, 351, 401
Tru9I TTAA 3 cut(s) 165, 351, 401
TscAI CASTG 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 92, 183, 234, 326, 374
TspGWI ACGGA 1 cut(s) 268
TspRI CASTG 1 cut(s) 149
XapI RAATTY 2 cut(s) 121, 347
XceI RCATGY 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.