Rh1DG086400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000165
Physical Location & Seq
Forward (+)
16064755 .. 16068883
4129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG086400.1

Sequence Viewer

Length: 585 bp
ATGGAATCAGACTCCAAATCAGAATTCTCAGCAAACAGCATTAAAGCGACGGCTATAGTTCCTACACTCTATTGCTCTAGTTTGGGGGGAGAGTTCGTCTCCTGGCAAGAACCTAAAGCCTACTATTTTCATTCCAAGAAAAAAGAAATCACTCTTTCTCTTGTGCAAAAGATGGAGGAGATTGTTGGAGAAGATGGAGAACTAAAGCCGGGGACTAAGATTTTGAAGGAGCTGTTAGTAGAGGCAATGAAGCGTCTTGAGAAAGACAAGGAAACTCAGGACATGTTGGAAAATTTGAACAAAGTTGGTAATCAGTCCAATCTTGACATTCCAAAGAATAAGAAAACAAAAGATGCAAGCCAAGACAATCAAGAAAACGTGATTGATTCTTCTTTTATACCAAGAGCTCCACTTCATGTGCTAGCATTTAATCCTCACTTTGGTGTACCTCACACCCCATTTCATAATCAGGGTAATTTAAGTTGGACTTTTGGGAATCCCAATTTCTGTTTCAATTATGGTGTTATGCCTTCCTCAAATCAGAACTCCTGCAACTCTGCAAGTACTAATAGAAGAGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.77

Weight (kDa)

6.52

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 23, 292
AfaI GTAC 2 cut(s) 447, 565
AfiI CCNNNNNNNGG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 3 cut(s) 226, 298, 514
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 4 cut(s) 8, 40, 494, 526
AleI CACNNNNGTG 1 cut(s) 441
AluBI AGCT 2 cut(s) 232, 407
AluI AGCT 2 cut(s) 232, 407
Alw21I GWGCWC 1 cut(s) 409
Alw26I GTCTC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 23, 292
ArsI GACNNNNNNTTYG 2 cut(s) 205, 237
AsuC2I CCSGG 1 cut(s) 210
AsuNHI GCTAGC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 409
BccI CCATC 2 cut(s) 166, 188
BceAI ACGGC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 103
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 78, 422
BfmI CTRYAG 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 2 cut(s) 103, 210
BmrFI CCNGG 2 cut(s) 103, 210
BmsI GCATC 1 cut(s) 343
BmtI GCTAGC 1 cut(s) 425
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 209
BseLI CCNNNNNNNGG 1 cut(s) 440
BseMI GCAATG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 42, 290
BseRI GAGGAG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 409
BsiSI CCGG 1 cut(s) 209
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 103
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 409
BspCNI CTCAG 2 cut(s) 41, 289
BspOI GCTAGC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 358, 423
BstDEI CTNAG 3 cut(s) 28, 216, 276
BstMAI GTCTC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 101, 208
BstSFI CTRYAG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 358, 423
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 446, 564
CviAII CATG 2 cut(s) 283, 416
CviJI RGCY 6 cut(s) 53, 119, 208, 232, 360, 407
CviKI_1 RGCY 6 cut(s) 53, 119, 208, 232, 360, 407
CviQI GTAC 2 cut(s) 446, 564
DdeI CTNAG 3 cut(s) 28, 216, 276
Eam1104I CTCTTC 1 cut(s) 568
EarI CTCTTC 1 cut(s) 568
Ecl136II GAGCTC 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 2 cut(s) 286, 419
FaiI YATR 7 cut(s) 56, 284, 398, 417, 465, 519, 527
FalI AAGNNNNNCTT 2 cut(s) 472, 504
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 282, 415
FriOI GRGCYC 1 cut(s) 409
FspBI CTAG 2 cut(s) 78, 422
HapII CCGG 1 cut(s) 209
HgaI GACGC 1 cut(s) 242
Hin1II CATG 2 cut(s) 286, 419
HinfI GANTC 4 cut(s) 5, 11, 386, 496
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 3 cut(s) 10, 22, 543
Hpy188III TCNNGA 4 cut(s) 257, 278, 323, 371
Hpy8I GTNNAC 1 cut(s) 446
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 220, 540
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 166, 356, 552, 560
HpyF3I CTNAG 3 cut(s) 28, 216, 276
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 2 cut(s) 286, 419
LmnI GCTCC 2 cut(s) 229, 412
LpnPI CCDG 6 cut(s) 88, 115, 222, 263, 455, 562
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 78, 422
MaeII ACGT 1 cut(s) 378
MboII GAAGA 3 cut(s) 203, 381, 585
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 5 cut(s) 23, 292, 475, 502, 514
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 3 cut(s) 166, 267, 464
MnlI CCTC 5 cut(s) 169, 235, 444, 459, 544
MseI TTAA 3 cut(s) 42, 429, 479
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 2 cut(s) 103, 210
MvaI CCWGG 1 cut(s) 103
NciI CCSGG 1 cut(s) 210
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 2 cut(s) 286, 419
NspI RCATGY 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 441
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 3 cut(s) 5, 386, 496
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PscI ACATGT 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
RsaI GTAC 2 cut(s) 447, 565
RsaNI GTAC 2 cut(s) 446, 564
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 409
SaqAI TTAA 3 cut(s) 42, 429, 479
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 1 cut(s) 5
ScrFI CCNGG 2 cut(s) 103, 210
SduI GDGCHC 1 cut(s) 409
SetI ASST 5 cut(s) 115, 234, 381, 409, 451
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 23, 292, 475, 502, 514
SspMI CTAG 2 cut(s) 78, 422
SstI GAGCTC 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 101, 208
TaiI ACGT 1 cut(s) 381
TasI AATT 5 cut(s) 23, 292, 475, 502, 514
TatI WGTACW 1 cut(s) 563
TfiI GAWTC 3 cut(s) 5, 386, 496
Tru1I TTAA 3 cut(s) 42, 429, 479
Tru9I TTAA 3 cut(s) 42, 429, 479
TspDTI ATGAA 4 cut(s) 119, 263, 404, 452
XapI RAATTY 2 cut(s) 23, 292
XceI RCATGY 1 cut(s) 286
XspI CTAG 2 cut(s) 78, 422
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.