Rmu_sc0006735.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006735.1
OG0000165
Physical Location & Seq
Reverse (-)
2726 .. 4778
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006735.1_g000001.1.cds

Sequence Viewer

Length: 984 bp
atggcggaatcaccggaaaaactgaaactgccccccgtgaggttccttgcttcgattcaggaaggaggtggtccaatattgcctggtggcacgccgtcaggtggctggacgacggcgaatcaaacggaaaaagagaagggtcgacgaggagaggagggagagatcgggaaagaagtgagagagagttaccaagtgggtttccggaaatggaaacctactgtgccacctgacggcgtgccaccaggcaatataggaccacctccttctgctgcacacaccggtggtagtaaatcatggttttgggtagtccattttaggggaagttctgccaaatttttggaagaatttcttctaggtggaccccgcagggctaatttggatttcaccctgaaatccgggggcggactaaaagaagtttctagcctggatgcagtttatatatatcaagcaattgaagatggtcgtcaaagtgtgcacaagattgaatataactctacatccttgaacatatattgttcttgtaagtcatttgagttgcttggaatcttgtgtggtcatgctttgaaggtgtttgataagaataatatcactattttacccactcagtatatattgaaaaggtggattaaagaagtaaagaaagggattgtggtcagcaataatacatgtggaggaacaagtgagaattcaaagtctgctagagtgttgcgccttagtgaattgatgcatgaaggaaatagtatgaatgacatagcctcactgcctggttcagatactaaaattgacaaggacctgttaaaagaggcaatgaagagtcttgaaaaagataaggacactatgtatgtgttggaaaatttgaagaaacttggtgcccaatctgactctagcatttctggtaatgagacactagttttgaatccacctagtgcaaagactaaaggaatgaaaagtgcaagaatcaaagacgtgagggagataaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

327

Amino Acids

35.69

Weight (kDa)

9.14

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 142
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 3 cut(s) 5, 364, 402
AcsI RAATTY 4 cut(s) 332, 344, 685, 853
AdeI CACNNNGTG 1 cut(s) 926
AfiI CCNNNNNNNGG 4 cut(s) 39, 101, 230, 316
AflIII ACRYGT 1 cut(s) 665
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 9 cut(s) 455, 485, 505, 565, 616, 690, 821, 859, 916
AhlI ACTAGT 1 cut(s) 907
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 4 cut(s) 82, 241, 423, 763
AleI CACNNNNGTG 1 cut(s) 279
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 1 cut(s) 896
Alw44I GTGCAC 1 cut(s) 473
Aor13HI TCCGGA 1 cut(s) 201
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 4 cut(s) 332, 344, 685, 853
ArsI GACNNNNNNTTYG 2 cut(s) 895, 927
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 2 cut(s) 345, 348
AspLEI GCGC 1 cut(s) 711
AspS9I GGNCC 4 cut(s) 71, 254, 359, 790
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 3, 376
AvaII GGWCC 4 cut(s) 71, 254, 359, 790
BaeGI GKGCMC 2 cut(s) 477, 874
BanI GGYRCC 1 cut(s) 869
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 256
BccI CCATC 1 cut(s) 452
BceAI ACGGC 3 cut(s) 79, 129, 247
BciT130I CCWGG 4 cut(s) 84, 243, 425, 765
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 896
BcuI ACTAGT 1 cut(s) 907
BfaI CTAG 6 cut(s) 353, 420, 699, 885, 908, 924
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 5 cut(s) 84, 243, 397, 425, 765
Bme18I GGWCC 4 cut(s) 71, 254, 359, 790
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 4 cut(s) 71, 254, 359, 790
BmiI GGNNCC 3 cut(s) 44, 361, 871
BmrFI CCNGG 5 cut(s) 84, 243, 397, 425, 765
BmsI GCATC 2 cut(s) 418, 714
BpuMI CCSGG 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 3 cut(s) 13, 201, 278
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 101, 230, 316
Bse118I RCCGGY 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 813
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 4 cut(s) 84, 243, 425, 765
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 433, 497
BseLI CCNNNNNNNGG 4 cut(s) 39, 101, 230, 316
BseMI GCAATG 1 cut(s) 813
BseMII CTCAG 1 cut(s) 617
BseRI GAGGAG 2 cut(s) 162, 167
BseSI GKGCMC 2 cut(s) 477, 874
BseXI GCAGC 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 869
BshTI ACCGGT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 477
BsiSI CCGG 4 cut(s) 14, 202, 279, 396
BslI CCNNNNNNNGG 4 cut(s) 39, 101, 230, 316
BsmAI GTCTC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 477, 874
Bsp13I TCCGGA 1 cut(s) 201
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 3 cut(s) 5, 364, 402
BspCNI CTCAG 1 cut(s) 616
BspEI TCCGGA 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 44, 361, 871
BspT107I GGYRCC 1 cut(s) 869
BsrDI GCAATG 1 cut(s) 813
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 4 cut(s) 84, 243, 425, 765
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 806
BstC8I GCNNGC 2 cut(s) 92, 236
BstDEI CTNAG 2 cut(s) 603, 713
BstF5I GGATG 2 cut(s) 433, 497
BstHHI GCGC 1 cut(s) 711
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 1 cut(s) 162
BstNI CCWGG 4 cut(s) 84, 243, 425, 765
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 5 cut(s) 82, 241, 395, 423, 763
BstSLI GKGCMC 2 cut(s) 477, 874
BstV1I GCAGC 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 337
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 2 cut(s) 433, 497
BtsI GCAGTG 1 cut(s) 758
BtsIMutI CAGTG 1 cut(s) 758
Cac8I GCNNGC 2 cut(s) 92, 236
CfoI GCGC 1 cut(s) 711
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 4 cut(s) 71, 254, 359, 790
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 4 cut(s) 294, 557, 666, 728
CviJI RGCY 4 cut(s) 105, 371, 423, 755
CviKI_1 RGCY 4 cut(s) 105, 371, 423, 755
DdeI CTNAG 2 cut(s) 603, 713
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DraIII CACNNNGTG 1 cut(s) 926
Eam1104I CTCTTC 1 cut(s) 806
EarI CTCTTC 1 cut(s) 806
EciI GGCGGA 2 cut(s) 20, 417
Eco47I GGWCC 4 cut(s) 71, 254, 359, 790
EcoO109I RGGNCCY 1 cut(s) 790
EcoRI GAATTC 1 cut(s) 685
EcoRII CCWGG 4 cut(s) 82, 241, 423, 763
EcoT22I ATGCAT 1 cut(s) 729
FaeI CATG 4 cut(s) 297, 560, 669, 731
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FatI CATG 4 cut(s) 293, 556, 665, 727
FauI CCCGC 1 cut(s) 371
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 440, 484
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 6 cut(s) 353, 420, 699, 885, 908, 924
GlaI GCGC 1 cut(s) 710
GluI GCNGC 1 cut(s) 270
HapII CCGG 4 cut(s) 14, 202, 279, 396
HhaI GCGC 1 cut(s) 711
Hin1II CATG 4 cut(s) 297, 560, 669, 731
Hin6I GCGC 1 cut(s) 709
HinP1I GCGC 1 cut(s) 709
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 8 cut(s) 8, 55, 118, 543, 814, 881, 916, 957
HpaII CCGG 4 cut(s) 14, 202, 279, 396
HphI GGTGA 2 cut(s) 3, 376
Hpy166II GTNNAC 3 cut(s) 143, 359, 475
Hpy188I TCNGA 2 cut(s) 772, 880
Hpy188III TCNNGA 4 cut(s) 59, 166, 202, 818
Hpy8I GTNNAC 3 cut(s) 143, 359, 475
Hpy99I CGWCG 2 cut(s) 115, 147
HpyAV CCTTC 5 cut(s) 56, 130, 273, 559, 725
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 966
HpyCH4V TGCA 6 cut(s) 272, 431, 475, 727, 929, 953
HpyF3I CTNAG 2 cut(s) 603, 713
HpySE526I ACGT 1 cut(s) 966
Hsp92II CATG 4 cut(s) 297, 560, 669, 731
HspAI GCGC 1 cut(s) 709
Kpn2I TCCGGA 1 cut(s) 201
Kzo9I GATC 1 cut(s) 162
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 418, 714
MaeI CTAG 6 cut(s) 353, 420, 699, 885, 908, 924
MaeII ACGT 1 cut(s) 966
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 5 cut(s) 341, 353, 467, 823, 871
MfeI CAATTG 1 cut(s) 450
MhlI GDGCHC 2 cut(s) 477, 874
MluCI AATT 8 cut(s) 332, 344, 373, 450, 685, 719, 780, 853
MlyI GAGTC 2 cut(s) 823, 875
MmeI TCCRAC 1 cut(s) 828
Mph1103I ATGCAT 1 cut(s) 729
MroI TCCGGA 1 cut(s) 201
MroXI GAANNNNTTC 2 cut(s) 345, 348
MseI TTAA 2 cut(s) 627, 797
MslI CAYNNNNRTG 1 cut(s) 279
MspI CCGG 4 cut(s) 14, 202, 279, 396
MspR9I CCNGG 5 cut(s) 84, 243, 397, 425, 765
MunI CAATTG 1 cut(s) 450
MvaI CCWGG 4 cut(s) 84, 243, 425, 765
NciI CCSGG 1 cut(s) 397
NdeII GATC 1 cut(s) 162
NlaIII CATG 4 cut(s) 297, 560, 669, 731
NlaIV GGNNCC 3 cut(s) 44, 361, 871
NsiI ATGCAT 1 cut(s) 729
NspI RCATGY 1 cut(s) 669
OliI CACNNNNGTG 1 cut(s) 279
PciI ACATGT 1 cut(s) 665
PdmI GAANNNNTTC 2 cut(s) 345, 348
PfeI GAWTC 6 cut(s) 8, 55, 118, 543, 916, 957
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 822, 875
PpsI GAGTC 2 cut(s) 822, 875
PpuMI RGGWCCY 1 cut(s) 790
PscI ACATGT 1 cut(s) 665
Psp5II RGGWCCY 1 cut(s) 790
Psp6I CCWGG 4 cut(s) 82, 241, 423, 763
PspGI CCWGG 4 cut(s) 82, 241, 423, 763
PspN4I GGNNCC 3 cut(s) 44, 361, 871
PspPI GGNCC 4 cut(s) 71, 254, 359, 790
PspPPI RGGWCCY 1 cut(s) 790
RseI CAYNNNNRTG 1 cut(s) 279
SalI GTCGAC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 627, 797
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 4 cut(s) 71, 254, 359, 790
SchI GAGTC 2 cut(s) 823, 875
ScrFI CCNGG 5 cut(s) 84, 243, 397, 425, 765
SduI GDGCHC 2 cut(s) 477, 874
SfaNI GCATC 2 cut(s) 418, 714
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 4 cut(s) 71, 254, 359, 790
SmiMI CAYNNNNRTG 1 cut(s) 279
SpeI ACTAGT 1 cut(s) 907
Sse9I AATT 8 cut(s) 332, 344, 373, 450, 685, 719, 780, 853
SsiI CCGC 3 cut(s) 5, 364, 402
SspI AATATT 1 cut(s) 78
SspMI CTAG 6 cut(s) 353, 420, 699, 885, 908, 924
StyD4I CCNGG 5 cut(s) 82, 241, 395, 423, 763
TaaI ACNGT 1 cut(s) 220
TaiI ACGT 1 cut(s) 969
TaqI TCGA 2 cut(s) 53, 142
TasI AATT 8 cut(s) 332, 344, 373, 450, 685, 719, 780, 853
TfiI GAWTC 6 cut(s) 8, 55, 118, 543, 916, 957
Tru1I TTAA 2 cut(s) 627, 797
Tru9I TTAA 2 cut(s) 627, 797
TscAI CASTG 1 cut(s) 765
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 4 cut(s) 744, 758, 824, 959
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 765
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 4 cut(s) 71, 254, 359, 790
XapI RAATTY 4 cut(s) 332, 344, 685, 853
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 2 cut(s) 345, 348
XspI CTAG 6 cut(s) 353, 420, 699, 885, 908, 924
Zsp2I ATGCAT 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.