pycom15g22260

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000165
Physical Location & Seq
Reverse (-)
16340611 .. 16341493
883 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g22260.2

Sequence Viewer

Length: 834 bp
ATGATTAGGGAGTTATTTTGGGTAATGGATAACGATTGGCGAGGGAAAGTATTAGAGAAAAATGACAAGGAAGAAATATTTGAAGCAATTGATGAACTAAAAGTGGGGATGGAGGTGAGTAATGAAGCTGAAGCTTACAATCTATGCAACATATATGCCTTTAAGAAAGGTTTTAGTATCCGTAAAGGGAATATTCGAAGAGATTCCCACAATAATGTCCGGCAGCGTGACTTTTTTTGTTCAAAAGAAGGGTTTCAACCGGATGAAGATTTGTGTGAAGTGAAGAAGGTGAGGAGACTAGACACTAGAACTGGCTGTAAGGCTATGATTCGATTCACTGTGGACAATGACGTGTGGAAGATCAGTCACCTCAACCCAGATCATAATCACGAGTTTGCTAGGCCTGAAGAAAGACAGTTTCTACGATCAGGTAGACATATACCGGGTGTGCGCGCAGCACTCGTTAGCTCTATGGTTGATGGGAGTCCAAAACCAACACAATCGTATTCCCTCTTGGGAAAAGACTCTGGCAGCGCTGAGAATGTTGGGTCCACTAATAAGGGTTGTCATAATTGTTTGCAAAGGAAGAATGAAGAAATGTTAGAAGGACGGGATGGACAAAGTTTATTAAACTATTTTAGGCATAAACAGGCGGAGGATCCAAACTTTTTTTACAGTGTTCAAGTGGACCAATTTAACCGGGTGACCAATTTTTTCTGGAGAGATAGTAGATCAAAGTTGGATTATGATTGCTTTGGAGATGCTGTATGCTTTGACACCACATTTCGAACCAGGAAATACAATCTCATTTGTGCTCCTTTTGTGGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

278

Amino Acids

32.3

Weight (kDa)

7.56

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 433
AccII CGCG 1 cut(s) 453
AciI CCGC 1 cut(s) 653
AclWI GGATC 2 cut(s) 653, 666
AcuI CTGAAG 2 cut(s) 150, 426
AfeI AGCGCT 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 824
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 4 cut(s) 83, 243, 257, 683
AjiI CACGTC 1 cut(s) 352
AjnI CCWGG 1 cut(s) 791
AluBI AGCT 3 cut(s) 128, 134, 468
AluI AGCT 3 cut(s) 128, 134, 468
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 653, 666
Aor51HI AGCGCT 1 cut(s) 535
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 223, 455, 531
Asp700I GAANNNNTTC 2 cut(s) 202, 252
AspLEI GCGC 3 cut(s) 453, 455, 536
AspS9I GGNCC 2 cut(s) 549, 688
AsuC2I CCSGG 2 cut(s) 444, 701
AsuHPI GGTGA 4 cut(s) 127, 301, 359, 715
AsuII TTCGAA 2 cut(s) 196, 787
AvaII GGWCC 2 cut(s) 549, 688
BamHI GGATCC 1 cut(s) 658
BauI CACGAG 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 3 cut(s) 235, 467, 543
BccI CCATC 3 cut(s) 103, 473, 608
BciT130I CCWGG 1 cut(s) 793
BciVI GTATCC 1 cut(s) 188
BcnI CCSGG 2 cut(s) 444, 701
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 3 cut(s) 299, 306, 399
BfoI RGCGCY 1 cut(s) 537
BfuI GTATCC 1 cut(s) 188
BisI GCNGC 3 cut(s) 224, 456, 532
BlsI GCNGC 3 cut(s) 225, 457, 533
Bme1390I CCNGG 3 cut(s) 444, 701, 793
Bme18I GGWCC 2 cut(s) 549, 688
BmgBI CACGTC 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 549, 688
BmiI GGNNCC 2 cut(s) 550, 660
BmrFI CCNGG 3 cut(s) 444, 701, 793
BmsI GCATC 1 cut(s) 751
BpmI CTGGAG 1 cut(s) 739
Bpu14I TTCGAA 2 cut(s) 196, 787
BpuMI CCSGG 2 cut(s) 444, 701
BsaBI GATNNNNATC 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 4 cut(s) 712, 742, 750, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse1I ACTGG 1 cut(s) 316
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 1 cut(s) 793
BseGI GGATG 3 cut(s) 114, 268, 619
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMII CTCAG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 316
BsePI GCGCGC 1 cut(s) 451
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 3 cut(s) 235, 467, 543
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 817
BsiSI CCGG 4 cut(s) 220, 260, 443, 700
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 1 cut(s) 289
BsnI GGCC 1 cut(s) 403
Bsp119I TTCGAA 2 cut(s) 196, 787
Bsp1286I GDGCHC 1 cut(s) 817
Bsp143I GATC 5 cut(s) 360, 379, 425, 658, 731
BspACI CCGC 1 cut(s) 653
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 1 cut(s) 529
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 2 cut(s) 550, 660
BspPI GGATC 2 cut(s) 653, 666
BspT104I TTCGAA 2 cut(s) 196, 787
BsrI ACTGG 1 cut(s) 316
BssHII GCGCGC 1 cut(s) 451
BssMI GATC 5 cut(s) 360, 379, 425, 658, 731
BssSI CACGAG 1 cut(s) 389
Bst2BI CACGAG 1 cut(s) 389
Bst2UI CCWGG 1 cut(s) 793
Bst4CI ACNGT 3 cut(s) 340, 417, 677
Bst6I CTCTTC 1 cut(s) 193
BstBI TTCGAA 2 cut(s) 196, 787
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 1 cut(s) 537
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 3 cut(s) 114, 268, 619
BstFNI CGCG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 3 cut(s) 453, 455, 536
BstKTI GATC 5 cut(s) 363, 382, 428, 661, 734
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 5 cut(s) 360, 379, 425, 658, 731
BstNI CCWGG 1 cut(s) 793
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 3 cut(s) 442, 699, 791
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 3 cut(s) 235, 467, 543
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuI GTATCC 1 cut(s) 188
BsuRI GGCC 1 cut(s) 403
BtrI CACGTC 1 cut(s) 352
BtsCI GGATG 3 cut(s) 114, 268, 619
BtsIMutI CAGTG 2 cut(s) 336, 682
Cac8I GCNNGC 1 cut(s) 453
CfoI GCGC 3 cut(s) 453, 455, 536
Cfr13I GGNCC 2 cut(s) 549, 688
CviJI RGCY 6 cut(s) 128, 134, 315, 323, 403, 468
CviKI_1 RGCY 6 cut(s) 128, 134, 315, 323, 403, 468
DdeI CTNAG 1 cut(s) 537
DpnI GATC 5 cut(s) 362, 381, 427, 660, 733
DpnII GATC 5 cut(s) 360, 379, 425, 658, 731
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 668
Eco147I AGGCCT 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 549, 688
Eco47III AGCGCT 1 cut(s) 535
Eco57I CTGAAG 2 cut(s) 150, 426
Eco91I GGTNACC 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 791
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 224, 456, 532
FokI GGATG 3 cut(s) 121, 275, 626
Fsp4HI GCNGC 3 cut(s) 224, 456, 532
FspBI CTAG 3 cut(s) 299, 306, 399
GlaI GCGC 3 cut(s) 452, 454, 535
GluI GCNGC 3 cut(s) 224, 456, 532
GsuI CTGGAG 1 cut(s) 739
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 1 cut(s) 403
HapII CCGG 4 cut(s) 220, 260, 443, 700
HhaI GCGC 3 cut(s) 453, 455, 536
Hin6I GCGC 3 cut(s) 451, 453, 534
HinP1I GCGC 3 cut(s) 451, 453, 534
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 5 cut(s) 203, 328, 333, 484, 524
HpaII CCGG 4 cut(s) 220, 260, 443, 700
HphI GGTGA 4 cut(s) 127, 301, 359, 715
Hpy166II GTNNAC 4 cut(s) 343, 434, 552, 688
Hpy188III TCNNGA 2 cut(s) 389, 718
Hpy8I GTNNAC 4 cut(s) 343, 434, 552, 688
HpyAV CCTTC 3 cut(s) 242, 280, 599
HpyCH4III ACNGT 3 cut(s) 340, 417, 677
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 147, 580
HpyF3I CTNAG 1 cut(s) 537
HpySE526I ACGT 1 cut(s) 351
HspAI GCGC 3 cut(s) 451, 453, 534
Kzo9I GATC 5 cut(s) 360, 379, 425, 658, 731
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 3 cut(s) 235, 467, 543
LweI GCATC 1 cut(s) 751
MaeI CTAG 3 cut(s) 299, 306, 399
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 227, 365, 703
MalI GATC 5 cut(s) 362, 381, 427, 660, 733
MboI GATC 5 cut(s) 360, 379, 425, 658, 731
MboII GAAGA 8 cut(s) 83, 210, 278, 295, 370, 419, 598, 605
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 4 cut(s) 87, 571, 692, 709
MlyI GAGTC 2 cut(s) 493, 518
MmeI TCCRAC 1 cut(s) 720
MnlI CCTC 6 cut(s) 35, 106, 285, 380, 521, 649
MroXI GAANNNNTTC 2 cut(s) 202, 252
MseI TTAA 3 cut(s) 162, 629, 696
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 4 cut(s) 220, 260, 443, 700
MspR9I CCNGG 3 cut(s) 444, 701, 793
MunI CAATTG 1 cut(s) 87
MvaI CCWGG 1 cut(s) 793
MvnI CGCG 1 cut(s) 453
NciI CCSGG 2 cut(s) 444, 701
NdeII GATC 5 cut(s) 360, 379, 425, 658, 731
NlaIV GGNNCC 2 cut(s) 550, 660
NmuCI GTSAC 3 cut(s) 227, 365, 703
NspV TTCGAA 2 cut(s) 196, 787
PauI GCGCGC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 403
PdmI GAANNNNTTC 2 cut(s) 202, 252
PfeI GAWTC 3 cut(s) 203, 328, 333
PkrI GCNGC 3 cut(s) 225, 457, 533
PleI GAGTC 2 cut(s) 492, 518
PpsI GAGTC 2 cut(s) 492, 518
Psp6I CCWGG 1 cut(s) 791
PspEI GGTNACC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 791
PspN4I GGNNCC 2 cut(s) 550, 660
PspPI GGNCC 2 cut(s) 549, 688
PsuI RGATCY 1 cut(s) 658
PteI GCGCGC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 213
SaqAI TTAA 3 cut(s) 162, 629, 696
SatI GCNGC 3 cut(s) 224, 456, 532
Sau3AI GATC 5 cut(s) 360, 379, 425, 658, 731
Sau96I GGNCC 2 cut(s) 549, 688
SchI GAGTC 2 cut(s) 493, 518
ScrFI CCNGG 3 cut(s) 444, 701, 793
SduI GDGCHC 1 cut(s) 817
SetI ASST 9 cut(s) 117, 130, 136, 172, 291, 354, 372, 433, 470
SfaNI GCATC 1 cut(s) 751
SfuI TTCGAA 2 cut(s) 196, 787
SinI GGWCC 2 cut(s) 549, 688
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 4 cut(s) 87, 571, 692, 709
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 1 cut(s) 653
SspI AATATT 2 cut(s) 78, 193
SspMI CTAG 3 cut(s) 299, 306, 399
StuI AGGCCT 1 cut(s) 403
StyD4I CCNGG 3 cut(s) 442, 699, 791
TaaI ACNGT 3 cut(s) 340, 417, 677
TaiI ACGT 1 cut(s) 354
TaqI TCGA 3 cut(s) 196, 331, 787
TasI AATT 4 cut(s) 87, 571, 692, 709
TfiI GAWTC 3 cut(s) 203, 328, 333
Tru1I TTAA 3 cut(s) 162, 629, 696
Tru9I TTAA 3 cut(s) 162, 629, 696
TscAI CASTG 2 cut(s) 343, 682
TseFI GTSAC 3 cut(s) 227, 365, 703
TseI GCWGC 3 cut(s) 223, 455, 531
Tsp45I GTSAC 3 cut(s) 227, 365, 703
TspDTI ATGAA 4 cut(s) 108, 138, 279, 606
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 2 cut(s) 343, 682
VpaK11BI GGWCC 2 cut(s) 549, 688
XmiI GTMKAC 1 cut(s) 433
XmnI GAANNNNTTC 2 cut(s) 202, 252
XspI CTAG 3 cut(s) 299, 306, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.