FvH4_6g36651

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000165
Physical Location & Seq
Forward (+)
28836064 .. 28836704
641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36651.t1

Sequence Viewer

Length: 513 bp
ATGGCAGACAATGATTGTAATCAAGTGATTGATATAGAGGACAATGAGAAAGATATCATTACATCTGATTTGGAGAAACATCCGATGATTGTGAATCGTCAAGCTAGTAATGATGAAAATTTGTTTGGAGTAACGGTGAATAGCAAGGAAGAAGCATACGACCTCTACTGTGAGTATGGTGTCAGAATAGGGTTTAGTGTTCGGATAGACAAGAGGAGGAAAACCAACAATGTTGTCAGGCAAGTGAATTATTGTTGTTCCAAAGAAGGTTTCAAACTAGATAGTGACCTTTCAGAAGTGAACAAGACTCACAAGCTTGAAACTAGAACTGGTTGCCCAGTGAAAATTCGATTCGGATCGCAAGAGAATAATTTATGGAAAGTGACTCTCTTTGTTCCTAAACACAACCACAAACTTGCAGACCCAGAAGAAAGAAAGTATTTGCGCTCTAATCGAAAACTATTAGTAGCTCATAAGGGGGTGATTAGATCAATGAAAAGCTTAGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

171

Amino Acids

19.72

Weight (kDa)

8.54

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 55 - 140 1.7e-20 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 118, 345
AgsI TTSAA 2 cut(s) 274, 320
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 254, 286
AluBI AGCT 4 cut(s) 104, 316, 470, 501
AluI AGCT 4 cut(s) 104, 316, 470, 501
AlwI GGATC 1 cut(s) 364
ApoI RAATTY 2 cut(s) 118, 345
AspLEI GCGC 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 148, 493
BfaI CTAG 3 cut(s) 105, 278, 324
BmrI ACTGGG 1 cut(s) 332
BmuI ACTGGG 1 cut(s) 332
BsaBI GATNNNNATC 2 cut(s) 18, 355
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bse1I ACTGG 2 cut(s) 334, 338
Bse8I GATNNNNATC 2 cut(s) 18, 355
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 2 cut(s) 18, 355
BseNI ACTGG 2 cut(s) 334, 338
BseRI GAGGAG 1 cut(s) 229
Bsp143I GATC 3 cut(s) 356, 488, 505
BspPI GGATC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 334, 338
BssMI GATC 3 cut(s) 356, 488, 505
Bst4CI ACNGT 2 cut(s) 136, 170
BstDEI CTNAG 1 cut(s) 502
BstF5I GGATG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 3 cut(s) 359, 491, 508
BstMBI GATC 3 cut(s) 356, 488, 505
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 345
CfoI GCGC 1 cut(s) 447
CviJI RGCY 4 cut(s) 104, 316, 470, 501
CviKI_1 RGCY 4 cut(s) 104, 316, 470, 501
DdeI CTNAG 1 cut(s) 502
DpnI GATC 3 cut(s) 358, 490, 507
DpnII GATC 3 cut(s) 356, 488, 505
Eco32I GATATC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 55
FaiI YATR 5 cut(s) 35, 157, 177, 376, 474
FokI GGATG 1 cut(s) 66
FspBI CTAG 3 cut(s) 105, 278, 324
GlaI GCGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 447
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HindIII AAGCTT 2 cut(s) 314, 499
HinfI GANTC 4 cut(s) 94, 307, 351, 385
HphI GGTGA 2 cut(s) 148, 493
Hpy166II GTNNAC 1 cut(s) 301
Hpy188I TCNGA 6 cut(s) 67, 84, 185, 204, 295, 356
Hpy8I GTNNAC 1 cut(s) 301
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 136, 170
HpyCH4V TGCA 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 502
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 3 cut(s) 356, 488, 505
LpnPI CCDG 4 cut(s) 223, 315, 351, 438
MaeI CTAG 3 cut(s) 105, 278, 324
MaeIII GTNAC 3 cut(s) 130, 284, 382
MalI GATC 3 cut(s) 358, 490, 507
MboI GATC 3 cut(s) 356, 488, 505
MboII GAAGA 2 cut(s) 161, 440
MluCI AATT 4 cut(s) 118, 247, 345, 370
MlyI GAGTC 2 cut(s) 301, 379
MnlI CCTC 4 cut(s) 31, 173, 207, 210
NdeII GATC 3 cut(s) 356, 488, 505
NmuCI GTSAC 2 cut(s) 284, 382
PfeI GAWTC 2 cut(s) 94, 351
PleI GAGTC 2 cut(s) 301, 379
PpsI GAGTC 2 cut(s) 301, 379
Sau3AI GATC 3 cut(s) 356, 488, 505
SchI GAGTC 2 cut(s) 301, 379
SetI ASST 7 cut(s) 106, 165, 271, 291, 318, 472, 503
Sse9I AATT 4 cut(s) 118, 247, 345, 370
SspMI CTAG 3 cut(s) 105, 278, 324
TaaI ACNGT 2 cut(s) 136, 170
TaqI TCGA 2 cut(s) 349, 454
TasI AATT 4 cut(s) 118, 247, 345, 370
TfiI GAWTC 2 cut(s) 94, 351
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 2 cut(s) 284, 382
Tsp45I GTSAC 2 cut(s) 284, 382
TspDTI ATGAA 2 cut(s) 129, 509
TspRI CASTG 1 cut(s) 345
XapI RAATTY 2 cut(s) 118, 345
XspI CTAG 3 cut(s) 105, 278, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.