RchiOBHm_Chr7g0187081

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000165
Physical Location & Seq
Forward (+)
6867375 .. 6871031
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16698

Sequence Viewer

Length: 1179 bp
ATGAAATGGGTGGTCCTGAGAATGTTGGGTTCACTAAAAAAGATGTTCATAATTTTTTACAGAGGAAGAAAAATGAAATACTTGAAGCAGGGGATGGGCAGAGTTTGCTCAATCACTTTAAGCGCAAATAAGATGAAGATAAAGCAATGGCAAAAGCAATTGAGCAAGTTTTTCCAGGTACACAGCATCGGTTATGCACTTGGCATATTTCTAAGAATGCTGGAAAGAGAATTGGTAGTTACCTTGCAAATCCTGAGTTCAAGAAACAATTCAAGCTTACATAGCTGTAGTACTGAAACTGAATTTCAACCTTCATGGGATGATATGATCAGTAGATATAATCTTGGTGGTAATACATGGCTTGAGAAGTTGTATTCGCTCCGGGAGAAATGGTGTCCAGTTTTTAGTTTGGATACCTTTTCAGCAAAAATTAGATCAACTCAAAGGAGTGAAAGTACTAACAATGTGTTCCATCAAATCTCTACACACACAATGGAGCTCATCAAATTTGTGCATCACTGTGAGAAAAAAATTGAAGAGATGCGTTTGGCGGAGTTGGAAGATGACTATCGATGCAAAAATGGTACACCTCGTCCCCAAGTGTGGAGTAGAATGTTAAGGAGAGCAGCTAAAGTGTATACCATTAAAATGTTTCAGCTATTTGAAACAGAGTTTGTTGGCTGTATGGGAGTTAGACTAAAAGAAGCTTTTAAGAGGGATGAAGCACATTCATATGAAGCAATTGAAGATGGTAAACAAAGTGTACACAAGATTCAATATAACTCTATATCCTTCGACATTTCTTGTTCTTGCAAGTCTTTTGAATCACTTGGAATCTTGTGTCGTCATGCTTTGAAGGTGTCTGATATCAATAATGTCACTGTTTTACCCACTCAATATATATTGAAGAGGTGGACTAGAGAAGCAAAGAAAGGGATTGTGGTAAGCAATAACATTTCTGGAGGTACAAGTGAGAATATAAAGTCTGCTAGATTGTTGCGCCTTAGTGAGCTAATGCATGAAGGAAATAGTGTTTATGACATAGCTTCATTGAGTTGCTCAGGGACTAAGATTGTGAAGGAGCTGTTAGTAAAGGCAATGAAGCGTCTTGAGAAAGACAAGGAAACTCAGGACATGTTGGAAAATTTGAACAAAGTTGGTAATCAGTCCAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

392

Amino Acids

45.44

Weight (kDa)

9.57

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 265 - 287 7.7e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 638
AciI CCGC 1 cut(s) 551
AcsI RAATTY 3 cut(s) 302, 506, 1144
AfaI GTAC 6 cut(s) 180, 292, 457, 586, 765, 967
AfiI CCNNNNNNNGG 1 cut(s) 603
AflIII ACRYGT 1 cut(s) 1134
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 9 cut(s) 276, 285, 499, 629, 658, 707, 1012, 1046, 1084
AluI AGCT 9 cut(s) 276, 285, 499, 629, 658, 707, 1012, 1046, 1084
Alw21I GWGCWC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 626
ApoI RAATTY 3 cut(s) 302, 506, 1144
Asp700I GAANNNNTTC 1 cut(s) 268
AspLEI GCGC 2 cut(s) 125, 1002
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 383
AvaII GGWCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 501
BbvI GCAGC 1 cut(s) 638
BccI CCATC 3 cut(s) 88, 480, 743
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 406
BclI TGATCA 1 cut(s) 327
BcnI CCSGG 1 cut(s) 383
BfaI CTAG 2 cut(s) 918, 990
BfmI CTRYAG 1 cut(s) 286
BfuI GTATCC 1 cut(s) 406
BisI GCNGC 1 cut(s) 627
BlsI GCNGC 1 cut(s) 628
BmcAI AGTACT 2 cut(s) 292, 457
Bme1390I CCNGG 2 cut(s) 176, 383
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 176, 383
BmsI GCATC 4 cut(s) 195, 523, 531, 563
BpmI CTGGAG 1 cut(s) 981
Bpu10I CCTNAGC 1 cut(s) 1060
BpuEI CTTGAG 2 cut(s) 383, 1130
BpuMI CCSGG 1 cut(s) 383
Bsa29I ATCGAT 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 567
BsaXI ACNNNNNCTCC 4 cut(s) 377, 407, 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 2 cut(s) 152, 1104
Bse8I GATNNNNATC 1 cut(s) 567
BseBI CCWGG 1 cut(s) 176
BseCI ATCGAT 1 cut(s) 571
BseGI GGATG 3 cut(s) 99, 325, 724
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMI GCAATG 2 cut(s) 152, 1104
BseMII CTCAG 4 cut(s) 8, 245, 1074, 1142
BseNI ACTGG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 501
BsiSI CCGG 1 cut(s) 382
BslFI GGGAC 2 cut(s) 579, 1078
BslI CCNNNNNNNGG 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 579, 1078
BsmI GAATGC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 501
Bsp1407I TGTACA 1 cut(s) 763
Bsp143I GATC 2 cut(s) 327, 434
BspACI CCGC 1 cut(s) 551
BspCNI CTCAG 4 cut(s) 9, 246, 1073, 1141
BspDI ATCGAT 1 cut(s) 571
BsrDI GCAATG 2 cut(s) 152, 1104
BsrGI TGTACA 1 cut(s) 763
BsrI ACTGG 1 cut(s) 398
BssMI GATC 2 cut(s) 327, 434
BssNAI GTATAC 1 cut(s) 639
Bst1107I GTATAC 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 521, 883
Bst6I CTCTTC 2 cut(s) 531, 902
BstAPI GCANNNNNTGC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 763
BstDEI CTNAG 7 cut(s) 17, 212, 254, 1004, 1060, 1068, 1128
BstF5I GGATG 3 cut(s) 99, 325, 724
BstHHI GCGC 2 cut(s) 125, 1002
BstKTI GATC 2 cut(s) 330, 437
BstMBI GATC 2 cut(s) 327, 434
BstMWI GCNNNNNNNGC 2 cut(s) 105, 282
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 1138
BstSCI CCNGG 2 cut(s) 174, 381
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 638
BstZ17I GTATAC 1 cut(s) 639
Bsu15I ATCGAT 1 cut(s) 571
BsuI GTATCC 1 cut(s) 406
BsuTUI ATCGAT 1 cut(s) 571
BtsCI GGATG 3 cut(s) 99, 325, 724
BtsIMutI CAGTG 2 cut(s) 517, 879
CfoI GCGC 2 cut(s) 125, 1002
Cfr13I GGNCC 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 571
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 6 cut(s) 179, 291, 456, 585, 764, 966
CviAII CATG 5 cut(s) 315, 357, 848, 1019, 1135
CviQI GTAC 6 cut(s) 179, 291, 456, 585, 764, 966
DdeI CTNAG 7 cut(s) 17, 212, 254, 1004, 1060, 1068, 1128
DpnI GATC 2 cut(s) 329, 436
DpnII GATC 2 cut(s) 327, 434
Eam1104I CTCTTC 2 cut(s) 531, 902
EarI CTCTTC 2 cut(s) 531, 902
EciI GGCGGA 1 cut(s) 566
Ecl136II GAGCTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 501
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 499
EcoICRI GAGCTC 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 868
EcoT22I ATGCAT 1 cut(s) 1020
EcoT38I GRGCYC 1 cut(s) 501
FaeI CATG 5 cut(s) 318, 360, 851, 1022, 1138
FaqI GGGAC 2 cut(s) 579, 1078
FatI CATG 5 cut(s) 314, 356, 847, 1018, 1134
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 327
FblI GTMKAC 1 cut(s) 638
Fnu4HI GCNGC 1 cut(s) 627
FokI GGATG 3 cut(s) 106, 332, 731
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 1 cut(s) 627
FspBI CTAG 2 cut(s) 918, 990
GlaI GCGC 2 cut(s) 124, 1001
GluI GCNGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 981
HapII CCGG 1 cut(s) 382
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 2 cut(s) 125, 1002
Hin1II CATG 5 cut(s) 318, 360, 851, 1022, 1138
Hin6I GCGC 2 cut(s) 123, 1000
HinP1I GCGC 2 cut(s) 123, 1000
HindIII AAGCTT 2 cut(s) 274, 705
HinfI GANTC 3 cut(s) 772, 824, 834
HpaII CCGG 1 cut(s) 382
Hpy166II GTNNAC 8 cut(s) 32, 181, 587, 639, 755, 764, 766, 915
Hpy188I TCNGA 1 cut(s) 865
Hpy188III TCNNGA 6 cut(s) 16, 253, 261, 960, 1109, 1130
Hpy8I GTNNAC 8 cut(s) 32, 181, 587, 639, 755, 764, 766, 915
HpyAV CCTTC 5 cut(s) 321, 802, 850, 1016, 1072
HpyCH4III ACNGT 2 cut(s) 521, 883
HpyCH4V TGCA 6 cut(s) 197, 247, 514, 576, 813, 1018
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 282
HpyF3I CTNAG 7 cut(s) 17, 212, 254, 1004, 1060, 1068, 1128
Hsp92II CATG 5 cut(s) 318, 360, 851, 1022, 1138
HspAI GCGC 2 cut(s) 123, 1000
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 2 cut(s) 327, 434
LmnI GCTCC 3 cut(s) 384, 496, 1081
Lsp1109I GCAGC 1 cut(s) 638
LweI GCATC 4 cut(s) 195, 523, 531, 563
MaeI CTAG 2 cut(s) 918, 990
MaeIII GTNAC 2 cut(s) 238, 877
MalI GATC 2 cut(s) 329, 436
MboI GATC 2 cut(s) 327, 434
MboII GAAGA 6 cut(s) 78, 148, 548, 572, 758, 919
MfeI CAATTG 2 cut(s) 158, 741
MhlI GDGCHC 1 cut(s) 501
MmeI TCCRAC 2 cut(s) 537, 1119
MnlI CCTC 5 cut(s) 56, 600, 708, 903, 956
Mph1103I ATGCAT 1 cut(s) 1020
MroXI GAANNNNTTC 1 cut(s) 268
MseI TTAA 4 cut(s) 119, 617, 645, 711
MslI CAYNNNNRTG 3 cut(s) 519, 647, 732
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 176, 383
MunI CAATTG 2 cut(s) 158, 741
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 2 cut(s) 105, 282
NciI CCSGG 1 cut(s) 383
NdeI CATATG 1 cut(s) 733
NdeII GATC 2 cut(s) 327, 434
NlaIII CATG 5 cut(s) 318, 360, 851, 1022, 1138
NmuCI GTSAC 1 cut(s) 877
NsiI ATGCAT 1 cut(s) 1020
NspI RCATGY 1 cut(s) 1138
PciI ACATGT 1 cut(s) 1134
PctI GAATGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 772, 824, 834
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 1 cut(s) 628
PscI ACATGT 1 cut(s) 1134
Psp124BI GAGCTC 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspPI GGNCC 1 cut(s) 13
RsaI GTAC 6 cut(s) 180, 292, 457, 586, 765, 967
RsaNI GTAC 6 cut(s) 179, 291, 456, 585, 764, 966
RseI CAYNNNNRTG 3 cut(s) 519, 647, 732
SacI GAGCTC 1 cut(s) 501
SaqAI TTAA 4 cut(s) 119, 617, 645, 711
SatI GCNGC 1 cut(s) 627
Sau3AI GATC 2 cut(s) 327, 434
Sau96I GGNCC 1 cut(s) 13
ScaI AGTACT 2 cut(s) 292, 457
ScrFI CCNGG 2 cut(s) 176, 383
SduI GDGCHC 1 cut(s) 501
SfaNI GCATC 4 cut(s) 195, 523, 531, 563
SfcI CTRYAG 1 cut(s) 286
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 3 cut(s) 519, 647, 732
SmlI CTYRAG 2 cut(s) 362, 1109
SmoI CTYRAG 2 cut(s) 362, 1109
SsiI CCGC 1 cut(s) 551
SspMI CTAG 2 cut(s) 918, 990
SstI GAGCTC 1 cut(s) 501
StyD4I CCNGG 2 cut(s) 174, 381
TaaI ACNGT 2 cut(s) 521, 883
TaqI TCGA 2 cut(s) 571, 795
TatI WGTACW 3 cut(s) 290, 455, 763
TfiI GAWTC 3 cut(s) 772, 824, 834
Tru1I TTAA 4 cut(s) 119, 617, 645, 711
Tru9I TTAA 4 cut(s) 119, 617, 645, 711
TscAI CASTG 2 cut(s) 524, 886
TseFI GTSAC 1 cut(s) 877
TseI GCWGC 1 cut(s) 626
Tsp45I GTSAC 1 cut(s) 877
TspRI CASTG 2 cut(s) 524, 886
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 3 cut(s) 302, 506, 1144
XceI RCATGY 1 cut(s) 1138
XmiI GTMKAC 1 cut(s) 638
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 2 cut(s) 918, 990
ZrmI AGTACT 2 cut(s) 292, 457
Zsp2I ATGCAT 1 cut(s) 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.