Rorug04G0326100

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000165
Physical Location & Seq
Reverse (-)
50105883 .. 50106642
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0326100.1

Sequence Viewer

Length: 675 bp
ATGTCGGATTCTACTGCTCTCATGGCCGCTCTCAACCCTTCAGATTCTGCTCGTATGACGTTGGGCTCGGCGGGAACGGCGACTTTGCAAGACAACCATTGGTATATGGTTGACCGCTTGCTTGGTCCAAAAGCTAGGTTTCCTGGCTTCAAAGGCACTATCCCCTCAATTTGGCGCATCAAATCTGGCCTCTCTATCCATGATGCTGGAGATCGTTTCTTGTTCCAGTTTGATCGGGAAGCCGATCGGAATCAGGCTCTTCATGGTGGACCTTGGTTCTATAAGAATACAATGTTGGTGGTTGGAGCTTATGATGGTGTTGGCTCGGTGGAGGCGGTGATTCACTTCGATCAGCCGGCGTTCCGGCAAAAGAAGGAGGAGCAGCGGATCCAGTTAATTTTTGATACTCGAAGACGCATGAGAACCTGGATGCTCTTCGAGTTCTTTGCTTCGATTGAACCTGAGATCACACTGATTTATGAGAAAGTGAAAGGCTTTTGCAGGGACTGTGGATTGTTTGAACACGATGCTATGGGCTATGATGGTTTCCTGGTGAAAGAAAAGGAGAAGCTGCAGCGCATGGCTCTGGCGGCAGCATTGGCTAGTTTGTCGTTGGATGTCGGTCAACCGAAGTTGGATTCCACTACACCGGGCGGCCTAACGGTATGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

224

Amino Acids

25.25

Weight (kDa)

6.97

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 31 - 101 4e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 29
AciI CCGC 7 cut(s) 27, 71, 115, 335, 385, 590, 654
AclWI GGATC 2 cut(s) 382, 395
AcoI YGGCCR 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 3 cut(s) 151, 458, 521
AjnI CCWGG 3 cut(s) 142, 425, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 278, 310
AluBI AGCT 3 cut(s) 134, 308, 571
AluI AGCT 3 cut(s) 134, 308, 571
AlwI GGATC 2 cut(s) 382, 395
AlwNI CAGNNNCTG 2 cut(s) 47, 507
AoxI GGCC 3 cut(s) 24, 187, 655
ApeKI GCWGC 4 cut(s) 382, 571, 574, 593
AspLEI GCGC 2 cut(s) 177, 579
AspS9I GGNCC 2 cut(s) 125, 269
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 2 cut(s) 349, 565
AvaII GGWCC 2 cut(s) 125, 269
BamHI GGATCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 4 cut(s) 394, 558, 586, 605
BccI CCATC 2 cut(s) 308, 536
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BciT130I CCWGG 3 cut(s) 144, 427, 551
BcnI CCSGG 1 cut(s) 651
BfaI CTAG 3 cut(s) 135, 603, 673
BfmI CTRYAG 1 cut(s) 572
BisI GCNGC 7 cut(s) 27, 383, 572, 575, 591, 594, 655
BlsI GCNGC 7 cut(s) 28, 384, 573, 576, 592, 595, 656
Bme1390I CCNGG 4 cut(s) 144, 427, 551, 651
Bme18I GGWCC 2 cut(s) 125, 269
BmgT120I GGNCC 2 cut(s) 125, 269
BmiI GGNNCC 1 cut(s) 389
BmrFI CCNGG 4 cut(s) 144, 427, 551, 651
BmsI GCATC 4 cut(s) 186, 193, 420, 517
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 651
BsaBI GATNNNNATC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 171
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 2 cut(s) 226, 391
Bse8I GATNNNNATC 1 cut(s) 249
BseBI CCWGG 3 cut(s) 144, 427, 551
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 2 cut(s) 435, 622
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 2 cut(s) 226, 391
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 4 cut(s) 394, 558, 586, 605
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 26, 189, 657
BsiEI CGRYCG 1 cut(s) 247
BsiSI CCGG 3 cut(s) 356, 364, 650
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 3 cut(s) 26, 189, 657
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
BspACI CCGC 7 cut(s) 27, 71, 115, 335, 385, 590, 654
BspANI GGCC 3 cut(s) 26, 189, 657
BspCNI CTCAG 1 cut(s) 454
BspLI GGNNCC 1 cut(s) 389
BspMAI CTGCAG 1 cut(s) 576
BspPI GGATC 2 cut(s) 382, 395
BspQI GCTCTTC 2 cut(s) 264, 440
BsrBI CCGCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 2 cut(s) 226, 391
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
BssT1I CCWWGG 1 cut(s) 272
Bst2UI CCWGG 3 cut(s) 144, 427, 551
Bst4CI ACNGT 2 cut(s) 509, 664
Bst6I CTCTTC 2 cut(s) 264, 440
BstC8I GCNNGC 2 cut(s) 119, 357
BstDEI CTNAG 1 cut(s) 462
BstF5I GGATG 2 cut(s) 435, 622
BstHHI GCGC 2 cut(s) 177, 579
BstKTI GATC 7 cut(s) 214, 235, 247, 352, 390, 468, 672
BstMBI GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 23, 77, 153, 590, 599
BstNI CCWGG 3 cut(s) 144, 427, 551
BstSCI CCNGG 4 cut(s) 142, 425, 549, 649
BstSFI CTRYAG 1 cut(s) 572
BstV1I GCAGC 4 cut(s) 394, 558, 586, 605
BstV2I GAAGAC 1 cut(s) 418
BstX2I RGATCY 2 cut(s) 387, 669
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 2 cut(s) 387, 669
BsuRI GGCC 3 cut(s) 26, 189, 657
BtsCI GGATG 2 cut(s) 435, 622
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 2 cut(s) 119, 357
CaiI CAGNNNCTG 2 cut(s) 47, 507
CfoI GCGC 2 cut(s) 177, 579
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 125, 269
CseI GACGC 1 cut(s) 423
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviAII CATG 5 cut(s) 22, 200, 263, 418, 580
DdeI CTNAG 1 cut(s) 462
DpnI GATC 7 cut(s) 213, 234, 246, 351, 389, 467, 671
DpnII GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 2 cut(s) 264, 440
EarI CTCTTC 2 cut(s) 264, 440
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 125, 269
Eco57I CTGAAG 1 cut(s) 24
EcoRII CCWGG 3 cut(s) 142, 425, 549
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 5 cut(s) 25, 203, 266, 421, 583
FaqI GGGAC 1 cut(s) 518
FatI CATG 5 cut(s) 21, 199, 262, 417, 579
FauI CCCGC 1 cut(s) 64
Fnu4HI GCNGC 7 cut(s) 27, 383, 572, 575, 591, 594, 655
FokI GGATG 2 cut(s) 442, 629
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 7 cut(s) 27, 383, 572, 575, 591, 594, 655
FspBI CTAG 3 cut(s) 135, 603, 673
GlaI GCGC 2 cut(s) 176, 578
GluI GCNGC 7 cut(s) 27, 383, 572, 575, 591, 594, 655
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 26, 189, 657
HapII CCGG 3 cut(s) 356, 364, 650
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 177, 579
Hin1II CATG 5 cut(s) 25, 203, 266, 421, 583
Hin6I GCGC 2 cut(s) 175, 577
HinP1I GCGC 2 cut(s) 175, 577
HincII GTYRAC 2 cut(s) 112, 626
HindII GTYRAC 2 cut(s) 112, 626
HinfI GANTC 5 cut(s) 8, 44, 250, 340, 638
HpaII CCGG 3 cut(s) 356, 364, 650
HphI GGTGA 2 cut(s) 349, 565
Hpy166II GTNNAC 3 cut(s) 112, 269, 626
Hpy188I TCNGA 3 cut(s) 7, 43, 249
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 112, 269, 626
HpyAV CCTTC 2 cut(s) 48, 367
HpyCH4III ACNGT 2 cut(s) 509, 664
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 88, 501, 574
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 77, 153, 590, 599
HpyF3I CTNAG 1 cut(s) 462
HpySE526I ACGT 1 cut(s) 59
Hsp92II CATG 5 cut(s) 25, 203, 266, 421, 583
HspAI GCGC 2 cut(s) 175, 577
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
LguI GCTCTTC 2 cut(s) 264, 440
LmnI GCTCC 2 cut(s) 305, 379
Lsp1109I GCAGC 4 cut(s) 394, 558, 586, 605
LweI GCATC 4 cut(s) 186, 193, 420, 517
MaeI CTAG 3 cut(s) 135, 603, 673
MaeII ACGT 1 cut(s) 59
MalI GATC 7 cut(s) 213, 234, 246, 351, 389, 467, 671
MbiI CCGCTC 1 cut(s) 29
MboI GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
MboII GAAGA 3 cut(s) 251, 423, 427
MflI RGATCY 2 cut(s) 387, 669
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 168, 396
MmeI TCCRAC 3 cut(s) 283, 594, 615
MnlI CCTC 4 cut(s) 175, 200, 325, 370
MroNI GCCGGC 1 cut(s) 355
MseI TTAA 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 356, 364, 650
MspR9I CCNGG 4 cut(s) 144, 427, 551, 651
MvaI CCWGG 3 cut(s) 144, 427, 551
MwoI GCNNNNNNNGC 5 cut(s) 23, 77, 153, 590, 599
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 651
NdeII GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 5 cut(s) 25, 203, 266, 421, 583
NlaIV GGNNCC 1 cut(s) 389
NmeAIII GCCGAG 1 cut(s) 47
PciSI GCTCTTC 2 cut(s) 264, 440
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 5 cut(s) 8, 44, 250, 340, 638
PkrI GCNGC 7 cut(s) 28, 384, 573, 576, 592, 595, 656
Ple19I CGATCG 1 cut(s) 247
Psp6I CCWGG 3 cut(s) 142, 425, 549
PspGI CCWGG 3 cut(s) 142, 425, 549
PspN4I GGNNCC 1 cut(s) 389
PspPI GGNCC 2 cut(s) 125, 269
PstI CTGCAG 1 cut(s) 576
PstNI CAGNNNCTG 2 cut(s) 47, 507
PsuI RGATCY 2 cut(s) 387, 669
PvuI CGATCG 1 cut(s) 247
SapI GCTCTTC 2 cut(s) 264, 440
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 7 cut(s) 27, 383, 572, 575, 591, 594, 655
Sau3AI GATC 7 cut(s) 211, 232, 244, 349, 387, 465, 669
Sau96I GGNCC 2 cut(s) 125, 269
ScrFI CCNGG 4 cut(s) 144, 427, 551, 651
SduI GDGCHC 1 cut(s) 68
SetI ASST 8 cut(s) 62, 136, 140, 274, 310, 428, 463, 573
SfaNI GCATC 4 cut(s) 186, 193, 420, 517
SfcI CTRYAG 1 cut(s) 572
SinI GGWCC 2 cut(s) 125, 269
Sse9I AATT 2 cut(s) 168, 396
SsiI CCGC 7 cut(s) 27, 71, 115, 335, 385, 590, 654
SspMI CTAG 3 cut(s) 135, 603, 673
StyD4I CCNGG 4 cut(s) 142, 425, 549, 649
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 509, 664
TaiI ACGT 1 cut(s) 62
TaqI TCGA 4 cut(s) 348, 409, 438, 452
TaqII GACCGA 1 cut(s) 611
TasI AATT 2 cut(s) 168, 396
TauI GCSGC 3 cut(s) 29, 593, 657
TfiI GAWTC 5 cut(s) 8, 44, 250, 340, 638
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 477
TseI GCWGC 4 cut(s) 382, 571, 574, 593
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 477
VpaK11BI GGWCC 2 cut(s) 125, 269
XspI CTAG 3 cut(s) 135, 603, 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.