RchiOBHm_Chr2g0100471

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000165
Physical Location & Seq
Reverse (-)
12421303 .. 12423982
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47510

Sequence Viewer

Length: 1944 bp
ATGGATAGTGGTTGGCAGAGGAATGTATTAGAAAATGGTGACAAGGTTGGAGAAAGTGATGAGCTAAGAGTGGGGATGGAGGTATCTAATGAAACTGAAGCTTATGAGCTATACAACACATATGCCTTCGAGAAAGGTTTTAGTATCCGTAAAGGGACTGTGCGAAGAGATGCCCAAAGTAATGTCCGCCAGCGAGACTATTTTTGTTCGAAAGAGGGGTTTCCACTAGATGAGGAGATGGGGGAAGTGAAAAAAGTGAGAAGATTGGACACAAGAACCGGTTGTAAGGCGATGGTTCGCTTCACTGTTGATAATGGTAAATGGAAGATTGCTCAGTTCAATCCGGTTCATAATCACGAGTTTGCTAAGCCTGAAGAGAGACAATTTCTGAGATCAAGTCGACATATACCAACTGTTCGTGCAGCTATCATTGGTTCTTCTAAGGTTGATGCGAGTGTAAGACCAACAAAATCACAATCACACTTGGAAAAAGAAATGGGCAGTACTGATAATGCTGGCCATAATTGTTTGCACAGGATGAAGGAAGAAATGATTGAAGGAGCAGATGGACAAAGTTTACTTGATTATTTGAAGCATCAGCAAATGGAGGATTCAAATTTCTTTTACAGTGTGCAAGTGGATCAATATAACCGTGTCACAAATTTCTTCTGGAGGGATAGTAGATCAAAGCTGGACTATGATTGCTTTGGAGATGTTGTACTCTTTGACACCACATTCCGAACCAAGAAATACAATCTAATTTGTGCTCCATTTGTGGGAGTTGATCATCACTGGAAGAATGTCCTATTTGGTTGTGCTTTTTTATCTGACGAGAGAACCGATTCATTTATTTGGTTGTTTGAAACTTTTCTGGAGTCTATGGGAAATAAACGGCCTAAAACCATTTTTACAGATGAGGATAATGCCATGGAAAAAGCAATTGAAATTATACTTCCAGGGACACGTCATCGACTATGCACATGGAACATCTCTAAGAATGCTTCACAATATCTTGCTAGCCACCTTGCTAATCCTGAGTTCAAGGAATGCTTTAACAAATGTGTTCATGATTGTGTCACCGAAGCAGAATTTGAAGCTACGTGGGATGATATGGTTAAAAAGTTCAACCTTGAGAATAATTTGTGGCTGAAAAAGTTATATTTACTTCGAGAGAAATGGTGTCCTGCTTTTAGCTCAGACACTTTCACAGCCAATATCGGATGTGACCAGAGGGGTGAGAACATTAATACTACTTTCCATCAAATTTCTACAAAAACAATGGATCTCATTGGTTTGGCACAGCATTACGAGAAAAAAACAAAAGTGTTACGATCAGCAGAGGCGGAAGAGGATTTTCGTTGTAAAAATGGTATGCCTCGTCTTAAAGTGAACACGGGTATCTTTAAGCATGCAGCTGCAGAGTACACTATTAAAATGTATTCATTCTTTGAAAATGAGCTTTTAAGTACCTTTGGGGTGAGGATGATGGAAGTTGGTAATGACGGCAACCAGTATGTATATGAAGCAATTGAAGAAGGTCATCAAAGAGTCTACATTATTGAGTACAACTCCACTACTTCCATGATTTGTTGTTCATGTAAGTTATTTGAATCCATGGGAGTGTTGTGTCGTCATGCCCTGAAAGTATTGGGTCTTAAAAACTTCATGAGCATACCAGCCCAATACATAGTGAAGAGATGGACTCGAGGGGCGAAAAAACAGAATGCGATGAGTGGTGGTTTATGTGAGCTCTCATGTAAAAGGGCAAAGTCTGCCCAATCACTGCGCCTGAGTGAGTTGATGCATGAAGGGAATAATGTTTTCAGTATAGGCTCATTGTGTGATTCTGGAACAAGAATTGTCAAACAAAAGTTGGTAGAGGCCATGAAGTTACTTGAAAGTGATGAGGAAACTACATCCATGCTGGGAACTTTGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

647

Amino Acids

74.48

Weight (kDa)

7.0

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 37 - 122 1.2e-20 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 203 - 321 2.2e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 239 - 333 1.7e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 400, 1551
AciI CCGC 2 cut(s) 187, 1343
AclWI GGATC 2 cut(s) 648, 1290
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 4 cut(s) 616, 661, 1088, 1263
AcuI CTGAAG 2 cut(s) 117, 393
AfaI GTAC 5 cut(s) 505, 720, 1424, 1468, 1565
AfiI CCNNNNNNNGG 1 cut(s) 776
AflIII ACRYGT 1 cut(s) 962
AgeI ACCGGT 1 cut(s) 278
AjiI CACGTC 1 cut(s) 965
AjnI CCWGG 1 cut(s) 955
Alw21I GWGCWC 2 cut(s) 769, 1752
Alw26I GTCTC 2 cut(s) 189, 373
AlwI GGATC 2 cut(s) 648, 1290
Ama87I CYCGRG 1 cut(s) 1704
AoxI GGCC 3 cut(s) 517, 893, 1881
ApeKI GCWGC 3 cut(s) 422, 1412, 1415
ApoI RAATTY 4 cut(s) 616, 661, 1088, 1263
AseI ATTAAT 1 cut(s) 1245
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 2 cut(s) 841, 867
AspLEI GCGC 1 cut(s) 1788
AsuHPI GGTGA 4 cut(s) 50, 1069, 1247, 1489
AsuII TTCGAA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 1016
AvaI CYCGRG 1 cut(s) 1704
BaeI ACNNNNGTAYC 2 cut(s) 1381, 1414
BalI TGGCCA 1 cut(s) 519
BanII GRGCYC 1 cut(s) 1752
BauI CACGAG 1 cut(s) 356
Bbv12I GWGCWC 2 cut(s) 769, 1752
BbvI GCAGC 3 cut(s) 434, 1402, 1424
BccI CCATC 7 cut(s) 70, 232, 286, 560, 1266, 1480, 1692
BceAI ACGGC 2 cut(s) 908, 1519
BciT130I CCWGG 1 cut(s) 957
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 189, 373
BfaI CTAG 2 cut(s) 227, 1017
BfmI CTRYAG 1 cut(s) 1416
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 3 cut(s) 423, 1413, 1416
BlpI GCTNAGC 1 cut(s) 366
BlsI GCNGC 3 cut(s) 424, 1414, 1417
BmcAI AGTACT 1 cut(s) 505
Bme1390I CCNGG 1 cut(s) 957
BmeT110I CYCGRG 1 cut(s) 1704
BmgBI CACGTC 1 cut(s) 965
BmrFI CCNGG 1 cut(s) 957
BmsI GCATC 4 cut(s) 160, 439, 604, 1791
BmtI GCTAGC 1 cut(s) 1020
BplI GAGNNNNNCTC 4 cut(s) 1553, 1585, 1687, 1719
BpmI CTGGAG 2 cut(s) 691, 893
Bpu1102I GCTNAGC 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1151
BsaAI YACGTR 1 cut(s) 1101
BsaJI CCNNGG 3 cut(s) 927, 956, 1614
BsaWI WCCGGW 2 cut(s) 278, 343
BsaXI ACNNNNNCTCC 4 cut(s) 664, 694, 702, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 776
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 2 cut(s) 797, 1510
BseBI CCWGG 1 cut(s) 957
BseDI CCNNGG 3 cut(s) 927, 956, 1614
BseGI GGATG 6 cut(s) 81, 543, 1111, 1226, 1488, 1916
BseLI CCNNNNNNNGG 1 cut(s) 776
BseMII CTCAG 5 cut(s) 347, 380, 1026, 1209, 1781
BseNI ACTGG 2 cut(s) 797, 1510
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 3 cut(s) 434, 1402, 1424
BseYI CCCAGC 1 cut(s) 1924
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 3 cut(s) 519, 895, 1883
BshTI ACCGGT 1 cut(s) 278
BsiHKAI GWGCWC 2 cut(s) 769, 1752
BsiHKCI CYCGRG 1 cut(s) 1704
BsiSI CCGG 2 cut(s) 279, 344
BslFI GGGAC 2 cut(s) 169, 973
BslI CCNNNNNNNGG 1 cut(s) 776
BsmAI GTCTC 2 cut(s) 189, 373
BsmFI GGGAC 2 cut(s) 169, 973
BsmI GAATGC 3 cut(s) 1003, 1052, 1729
BsnI GGCC 3 cut(s) 519, 895, 1883
BsoBI CYCGRG 1 cut(s) 1704
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 2 cut(s) 769, 1752
Bsp143I GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
Bsp1720I GCTNAGC 1 cut(s) 366
Bsp19I CCATGG 2 cut(s) 927, 1614
BspACI CCGC 2 cut(s) 187, 1343
BspANI GGCC 3 cut(s) 519, 895, 1883
BspCNI CTCAG 5 cut(s) 346, 381, 1027, 1208, 1782
BspHI TCATGA 2 cut(s) 1066, 1665
BspMAI CTGCAG 1 cut(s) 1420
BspOI GCTAGC 1 cut(s) 1020
BspPI GGATC 2 cut(s) 648, 1290
BspT104I TTCGAA 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 2 cut(s) 797, 1510
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 927, 956, 1614
BssMI GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 927, 1614
Bst2BI CACGAG 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 957
Bst4CI ACNGT 5 cut(s) 160, 307, 415, 629, 653
Bst6I CTCTTC 4 cut(s) 160, 369, 1341, 1688
BstAPI GCANNNNNTGC 1 cut(s) 1772
BstBAI YACGTR 1 cut(s) 1101
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 4 cut(s) 191, 517, 1018, 1410
BstDEI CTNAG 9 cut(s) 65, 333, 366, 389, 441, 993, 1035, 1195, 1790
BstDSI CCRYGG 2 cut(s) 927, 1614
BstF5I GGATG 6 cut(s) 81, 543, 1111, 1226, 1488, 1916
BstHHI GCGC 1 cut(s) 1788
BstKTI GATC 6 cut(s) 395, 643, 686, 787, 1285, 1334
BstMAI GTCTC 2 cut(s) 189, 373
BstMBI GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
BstMWI GCNNNNNNNGC 1 cut(s) 1772
BstNI CCWGG 1 cut(s) 957
BstNSI RCATGY 1 cut(s) 1412
BstSCI CCNGG 1 cut(s) 955
BstSFI CTRYAG 1 cut(s) 1416
BstV1I GCAGC 3 cut(s) 434, 1402, 1424
BstX2I RGATCY 1 cut(s) 1282
BstYI RGATCY 1 cut(s) 1282
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 519, 895, 1883
BtgI CCRYGG 2 cut(s) 927, 1614
BtgZI GCGATG 2 cut(s) 305, 1742
BtrI CACGTC 1 cut(s) 965
BtsCI GGATG 6 cut(s) 81, 543, 1111, 1226, 1488, 1916
BtsI GCAGTG 1 cut(s) 1781
BtsIMutI CAGTG 4 cut(s) 303, 634, 790, 1781
Cac8I GCNNGC 4 cut(s) 191, 517, 1018, 1410
CciI TCATGA 2 cut(s) 1066, 1665
CfoI GCGC 1 cut(s) 1788
Cfr10I RCCGGY 1 cut(s) 278
Csp6I GTAC 5 cut(s) 504, 719, 1423, 1467, 1564
CspAI ACCGGT 1 cut(s) 278
CviQI GTAC 5 cut(s) 504, 719, 1423, 1467, 1564
DdeI CTNAG 9 cut(s) 65, 333, 366, 389, 441, 993, 1035, 1195, 1790
DpnI GATC 6 cut(s) 394, 642, 685, 786, 1284, 1333
DpnII GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 4 cut(s) 160, 369, 1341, 1688
EarI CTCTTC 4 cut(s) 160, 369, 1341, 1688
EciI GGCGGA 2 cut(s) 176, 1358
Ecl136II GAGCTC 1 cut(s) 1750
Eco130I CCWWGG 2 cut(s) 927, 1614
Eco24I GRGCYC 1 cut(s) 1752
Eco53kI GAGCTC 1 cut(s) 1750
Eco57I CTGAAG 2 cut(s) 117, 393
Eco88I CYCGRG 1 cut(s) 1704
EcoICRI GAGCTC 1 cut(s) 1750
EcoRII CCWGG 1 cut(s) 955
EcoT14I CCWWGG 2 cut(s) 927, 1614
EcoT22I ATGCAT 1 cut(s) 1806
EcoT38I GRGCYC 1 cut(s) 1752
ErhI CCWWGG 2 cut(s) 927, 1614
FalI AAGNNNNNCTT 2 cut(s) 1034, 1066
FaqI GGGAC 2 cut(s) 169, 973
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 2 cut(s) 400, 1551
Fnu4HI GCNGC 3 cut(s) 423, 1413, 1416
FokI GGATG 6 cut(s) 88, 550, 1118, 1233, 1495, 1903
FriOI GRGCYC 1 cut(s) 1752
Fsp4HI GCNGC 3 cut(s) 423, 1413, 1416
FspBI CTAG 2 cut(s) 227, 1017
GlaI GCGC 1 cut(s) 1787
GluI GCNGC 3 cut(s) 423, 1413, 1416
GsaI CCCAGC 1 cut(s) 1928
GsuI CTGGAG 2 cut(s) 691, 893
HaeIII GGCC 3 cut(s) 519, 895, 1883
HapII CCGG 2 cut(s) 279, 344
HhaI GCGC 1 cut(s) 1788
Hin6I GCGC 1 cut(s) 1786
HinP1I GCGC 1 cut(s) 1786
HincII GTYRAC 1 cut(s) 401
HindII GTYRAC 1 cut(s) 401
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 7 cut(s) 611, 842, 875, 1548, 1610, 1702, 1844
HpaII CCGG 2 cut(s) 279, 344
HphI GGTGA 4 cut(s) 50, 1069, 1247, 1489
Hpy166II GTNNAC 5 cut(s) 401, 578, 1390, 1425, 1552
Hpy188I TCNGA 5 cut(s) 390, 740, 829, 1198, 1220
Hpy188III TCNNGA 9 cut(s) 130, 356, 670, 872, 1034, 1067, 1169, 1666, 1848
Hpy8I GTNNAC 5 cut(s) 401, 578, 1390, 1425, 1552
HpyAV CCTTC 5 cut(s) 136, 535, 551, 1529, 1802
HpyCH4III ACNGT 5 cut(s) 160, 307, 415, 629, 653
HpyCH4IV ACGT 2 cut(s) 964, 1100
HpyCH4V TGCA 7 cut(s) 422, 532, 634, 978, 1412, 1418, 1804
HpyF10VI GCNNNNNNNGC 1 cut(s) 1772
HpyF3I CTNAG 9 cut(s) 65, 333, 366, 389, 441, 993, 1035, 1195, 1790
HpySE526I ACGT 2 cut(s) 964, 1100
HspAI GCGC 1 cut(s) 1786
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
LmnI GCTCC 2 cut(s) 560, 772
Lsp1109I GCAGC 3 cut(s) 434, 1402, 1424
LweI GCATC 4 cut(s) 160, 439, 604, 1791
MaeI CTAG 2 cut(s) 227, 1017
MaeII ACGT 2 cut(s) 964, 1100
MaeIII GTNAC 6 cut(s) 38, 655, 1075, 1223, 1326, 1890
MalI GATC 6 cut(s) 394, 642, 685, 786, 1284, 1333
MboI GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
MfeI CAATTG 2 cut(s) 939, 1527
MflI RGATCY 1 cut(s) 1282
MhlI GDGCHC 2 cut(s) 769, 1752
MlsI TGGCCA 1 cut(s) 519
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 3 cut(s) 884, 1557, 1696
MmeI TCCRAC 1 cut(s) 28
Mox20I TGGCCA 1 cut(s) 519
Mph1103I ATGCAT 1 cut(s) 1806
MroXI GAANNNNTTC 2 cut(s) 841, 867
MscI TGGCCA 1 cut(s) 519
MseI TTAA 8 cut(s) 1053, 1116, 1245, 1383, 1404, 1431, 1463, 1656
MslI CAYNNNNRTG 2 cut(s) 1071, 1619
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 1415
MspI CCGG 2 cut(s) 279, 344
MspR9I CCNGG 1 cut(s) 957
MunI CAATTG 2 cut(s) 939, 1527
Mva1269I GAATGC 3 cut(s) 1003, 1052, 1729
MvaI CCWGG 1 cut(s) 957
MwoI GCNNNNNNNGC 1 cut(s) 1772
NcoI CCATGG 2 cut(s) 927, 1614
NdeI CATATG 1 cut(s) 121
NdeII GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
NheI GCTAGC 1 cut(s) 1016
NmuCI GTSAC 4 cut(s) 38, 655, 1075, 1223
NsiI ATGCAT 1 cut(s) 1806
NspI RCATGY 1 cut(s) 1412
NspV TTCGAA 1 cut(s) 209
PaeI GCATGC 1 cut(s) 1412
PaeR7I CTCGAG 1 cut(s) 1704
PagI TCATGA 2 cut(s) 1066, 1665
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PctI GAATGC 3 cut(s) 1003, 1052, 1729
PdmI GAANNNNTTC 2 cut(s) 841, 867
PfeI GAWTC 4 cut(s) 611, 842, 1610, 1844
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 3 cut(s) 424, 1414, 1417
PleI GAGTC 3 cut(s) 883, 1556, 1696
PpsI GAGTC 3 cut(s) 883, 1556, 1696
Ppu21I YACGTR 1 cut(s) 1101
PshBI ATTAAT 1 cut(s) 1245
Psp124BI GAGCTC 1 cut(s) 1752
Psp6I CCWGG 1 cut(s) 955
PspFI CCCAGC 1 cut(s) 1924
PspGI CCWGG 1 cut(s) 955
PspXI VCTCGAGB 1 cut(s) 1704
PstI CTGCAG 1 cut(s) 1420
PsuI RGATCY 1 cut(s) 1282
PvuII CAGCTG 1 cut(s) 1415
RsaI GTAC 5 cut(s) 505, 720, 1424, 1468, 1565
RsaNI GTAC 5 cut(s) 504, 719, 1423, 1467, 1564
RseI CAYNNNNRTG 2 cut(s) 1071, 1619
SacI GAGCTC 1 cut(s) 1752
SalI GTCGAC 1 cut(s) 399
SaqAI TTAA 8 cut(s) 1053, 1116, 1245, 1383, 1404, 1431, 1463, 1656
SatI GCNGC 3 cut(s) 423, 1413, 1416
Sau3AI GATC 6 cut(s) 392, 640, 683, 784, 1282, 1331
ScaI AGTACT 1 cut(s) 505
SchI GAGTC 3 cut(s) 884, 1557, 1696
ScrFI CCNGG 1 cut(s) 957
SduI GDGCHC 2 cut(s) 769, 1752
SfaNI GCATC 4 cut(s) 160, 439, 604, 1791
SfcI CTRYAG 1 cut(s) 1416
Sfr274I CTCGAG 1 cut(s) 1704
SfuI TTCGAA 1 cut(s) 209
SlaI CTCGAG 1 cut(s) 1704
SmiMI CAYNNNNRTG 2 cut(s) 1071, 1619
SmlI CTYRAG 2 cut(s) 1130, 1704
SmoI CTYRAG 2 cut(s) 1130, 1704
SphI GCATGC 1 cut(s) 1412
SsiI CCGC 2 cut(s) 187, 1343
SspMI CTAG 2 cut(s) 227, 1017
SstI GAGCTC 1 cut(s) 1752
StyD4I CCNGG 1 cut(s) 955
StyI CCWWGG 2 cut(s) 927, 1614
TaaI ACNGT 5 cut(s) 160, 307, 415, 629, 653
TaiI ACGT 2 cut(s) 967, 1103
TaqI TCGA 6 cut(s) 129, 209, 400, 970, 1168, 1705
TatI WGTACW 4 cut(s) 503, 718, 1422, 1563
TfiI GAWTC 4 cut(s) 611, 842, 1610, 1844
Tru1I TTAA 8 cut(s) 1053, 1116, 1245, 1383, 1404, 1431, 1463, 1656
Tru9I TTAA 8 cut(s) 1053, 1116, 1245, 1383, 1404, 1431, 1463, 1656
TscAI CASTG 4 cut(s) 310, 634, 797, 1788
TseFI GTSAC 4 cut(s) 38, 655, 1075, 1223
TseI GCWGC 3 cut(s) 422, 1412, 1415
Tsp45I GTSAC 4 cut(s) 38, 655, 1075, 1223
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 4 cut(s) 310, 634, 797, 1788
VspI ATTAAT 1 cut(s) 1245
XapI RAATTY 4 cut(s) 616, 661, 1088, 1263
XceI RCATGY 1 cut(s) 1412
XhoI CTCGAG 1 cut(s) 1704
XmiI GTMKAC 2 cut(s) 400, 1551
XmnI GAANNNNTTC 2 cut(s) 841, 867
XspI CTAG 2 cut(s) 227, 1017
ZrmI AGTACT 1 cut(s) 505
Zsp2I ATGCAT 1 cut(s) 1806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.