Rmu_sc0006475.1_g000009

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006475.1
OG0000165
Physical Location & Seq
Forward (+)
60543 .. 62215
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006475.1_g000009.1.cds

Sequence Viewer

Length: 1437 bp
atggaggaaactattggagacgatgaagaactcaaagtgggaatgcaagtacactctgatgatgaggcttacaatttatataatacctatgctttgaggaagggttttagtgttcgtaaaggacatattcgaagagatacatcaaataacatccgccaacgagaatttctatgttcaaaggaggggtttgcaagagacgaggatgtatttcaaccaaacaaacacaggaagttagaaacaagagtgggttgtaaggctatgatattatttgcggtgaaagatggaatatggacagtatcgcaaatcaattcagatcataatcatgagcttgcaaagcccgaagaaaggcagtttttgagatcagggcgaaaaataatagatgcttgtggaaatatatttacttccatgaaggatgcaggcgtacgaccaacgaaatcatttttctacatagcaaatgaagtgggcggtccagaaaatgttgggtttactaagaaagacgtctataactacttgcaaaggaaaaaaaatgaaatgttggaagcgggtgatgcacagagcttgctgaatcactttaagcgcaaacaagagtcatttgtttggttgtttgagtcatttttggagtccatgggaaataaagaactaaaaactgttttcacagatgaagataaagcaatggcaaatgcagttaaaatagtgtttccaaatgcatgtcatcgattgtgcacttggcatattgccaagaatgccagcaagagaattggcagttatcttggaaatcctgagttcaagaaacagtttaatcattgtttacatgggtgcactactgaaattgaatttcaagtttcatgggatgacttgattagtagatataatgttggaggtaatacttggctcgcaaagttgtattcacttagagagaagtggtgcctagcatttagtagggacattttttcagcaaagattagatcgactcaaaggagtgaaagtacaaacaatgtgttccatcaaatctctacaaacacaatggagctcattgaattttttcatcactatgagaaaaagatagaagagaggcgtttagcagagttggaagatgactaccgttgcaaaaatggtgcaccgcgtccaaaagtatggagtaaaatgttaagaagtgcagccaaggtttatactaacaaaatgtttcagctttttgaatcagaatttgttggctgtatgggagtcagactaaaaaaagtgtccagcctagataaagttcatatatatgaagcaattgaagatggtcgtcaaagtgtgcacaagattgaatataactctacatccttgagcatatcttgttcttgtaagtcattcgagtcacttggaatcactacaagagaaaatagcaaaagcgaggaatttcattgtgacaacccaaaattcgtcgcaaaaacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

478

Amino Acids

55.39

Weight (kDa)

8.77

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
AccB1I GGYRCC 1 cut(s) 924
AccII CGCG 1 cut(s) 1123
AciI CCGC 5 cut(s) 154, 272, 465, 542, 1121
AcsI RAATTY 6 cut(s) 164, 833, 1037, 1202, 1397, 1418
AcyI GRCGYC 1 cut(s) 498
AfaI GTAC 3 cut(s) 51, 423, 988
AfiI CCNNNNNNNGG 1 cut(s) 345
AgsI TTSAA 9 cut(s) 177, 212, 787, 833, 839, 1037, 1196, 1277, 1307
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 4 cut(s) 328, 558, 1030, 1189
AluI AGCT 4 cut(s) 328, 558, 1030, 1189
Alw21I GWGCWC 5 cut(s) 725, 821, 1032, 1120, 1299
Alw26I GTCTC 2 cut(s) 12, 189
Alw44I GTGCAC 4 cut(s) 721, 817, 1116, 1295
ApaLI GTGCAC 4 cut(s) 721, 817, 1116, 1295
ApeKI GCWGC 1 cut(s) 1157
ApoI RAATTY 6 cut(s) 164, 833, 1037, 1202, 1397, 1418
Asp700I GAANNNNTTC 1 cut(s) 1041
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 2 cut(s) 286, 557
AsuII TTCGAA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 467
BaeGI GKGCMC 4 cut(s) 725, 821, 1120, 1299
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 1032
Bbv12I GWGCWC 5 cut(s) 725, 821, 1032, 1120, 1299
BbvI GCAGC 1 cut(s) 1169
BccI CCATC 3 cut(s) 275, 1011, 1274
BcoDI GTCTC 2 cut(s) 12, 189
BfaI CTAG 2 cut(s) 929, 1247
BisI GCNGC 1 cut(s) 1158
BlsI GCNGC 1 cut(s) 1159
Bme18I GGWCC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 1 cut(s) 926
BmsI GCATC 3 cut(s) 370, 403, 538
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 1345
Bsa29I ATCGAT 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 624, 1161
BsaXI ACNNNNNCTCC 2 cut(s) 970, 1000
Bsc4I CCNNNNNNNGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 678
Bse8I GATNNNNATC 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 715
BseDI CCNNGG 2 cut(s) 624, 1161
BseGI GGATG 5 cut(s) 150, 208, 418, 856, 1319
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 345
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 771
BseSI GKGCMC 4 cut(s) 725, 821, 1120, 1299
BseXI GCAGC 1 cut(s) 1169
BsgI GTGCAG 1 cut(s) 1176
Bsh1236I CGCG 1 cut(s) 1123
BshNI GGYRCC 1 cut(s) 924
BshVI ATCGAT 1 cut(s) 715
BsiHKAI GWGCWC 5 cut(s) 725, 821, 1032, 1120, 1299
BsiWI CGTACG 1 cut(s) 421
BslFI GGGAC 1 cut(s) 956
BslI CCNNNNNNNGG 1 cut(s) 345
BsmAI GTCTC 2 cut(s) 12, 189
BsmBI CGTCTC 2 cut(s) 12, 189
BsmFI GGGAC 1 cut(s) 956
BsmI GAATGC 2 cut(s) 48, 748
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 5 cut(s) 725, 821, 1032, 1120, 1299
Bsp143I GATC 3 cut(s) 313, 359, 965
Bsp19I CCATGG 1 cut(s) 624
BspACI CCGC 5 cut(s) 154, 272, 465, 542, 1121
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 715
BspFNI CGCG 1 cut(s) 1123
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 926
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 924
BsrDI GCAATG 1 cut(s) 678
BssECI CCNNGG 2 cut(s) 624, 1161
BssMI GATC 3 cut(s) 313, 359, 965
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 624, 1161
Bst4CI ACNGT 4 cut(s) 295, 649, 795, 1103
Bst6I CTCTTC 2 cut(s) 127, 1062
BstACI GRCGYC 1 cut(s) 498
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 5 cut(s) 330, 418, 560, 748, 894
BstDEI CTNAG 4 cut(s) 489, 780, 911, 1434
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 5 cut(s) 150, 208, 418, 856, 1319
BstFNI CGCG 1 cut(s) 1123
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 3 cut(s) 316, 362, 968
BstMAI GTCTC 2 cut(s) 12, 189
BstMBI GATC 3 cut(s) 313, 359, 965
BstMWI GCNNNNNNNGC 3 cut(s) 334, 548, 743
BstNSI RCATGY 1 cut(s) 711
BstSLI GKGCMC 4 cut(s) 725, 821, 1120, 1299
BstUI CGCG 1 cut(s) 1123
BstV1I GCAGC 1 cut(s) 1169
BstXI CCANNNNNNTGG 1 cut(s) 1134
Bsu15I ATCGAT 1 cut(s) 715
BsuTUI ATCGAT 1 cut(s) 715
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 5 cut(s) 150, 208, 418, 856, 1319
Cac8I GCNNGC 5 cut(s) 330, 418, 560, 748, 894
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 467
ClaI ATCGAT 1 cut(s) 715
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 3 cut(s) 50, 422, 987
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviAII CATG 6 cut(s) 323, 406, 625, 708, 812, 846
CviQI GTAC 3 cut(s) 50, 422, 987
DdeI CTNAG 4 cut(s) 489, 780, 911, 1434
DpnI GATC 3 cut(s) 315, 361, 967
DpnII GATC 3 cut(s) 313, 359, 965
Eam1104I CTCTTC 2 cut(s) 127, 1062
EarI CTCTTC 2 cut(s) 127, 1062
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 1030
Eco130I CCWWGG 2 cut(s) 624, 1161
Eco24I GRGCYC 1 cut(s) 1032
Eco47I GGWCC 1 cut(s) 467
Eco53kI GAGCTC 1 cut(s) 1030
EcoICRI GAGCTC 1 cut(s) 1030
EcoT14I CCWWGG 2 cut(s) 624, 1161
EcoT22I ATGCAT 1 cut(s) 709
EcoT38I GRGCYC 1 cut(s) 1032
ErhI CCWWGG 2 cut(s) 624, 1161
Esp3I CGTCTC 2 cut(s) 12, 189
FaeI CATG 6 cut(s) 326, 409, 628, 711, 815, 849
FaqI GGGAC 1 cut(s) 956
FatI CATG 6 cut(s) 322, 405, 624, 707, 811, 845
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 1 cut(s) 1158
FokI GGATG 5 cut(s) 137, 215, 425, 863, 1306
FriOI GRGCYC 1 cut(s) 1032
Fsp4HI GCNGC 1 cut(s) 1158
FspBI CTAG 2 cut(s) 929, 1247
GlaI GCGC 1 cut(s) 578
GluI GCNGC 1 cut(s) 1158
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 1 cut(s) 579
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 6 cut(s) 326, 409, 628, 711, 815, 849
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HinfI GANTC 9 cut(s) 565, 587, 608, 620, 970, 1196, 1221, 1355, 1365
HphI GGTGA 2 cut(s) 286, 557
Hpy166II GTNNAC 7 cut(s) 52, 486, 723, 809, 819, 1118, 1297
Hpy188I TCNGA 4 cut(s) 58, 313, 1201, 1226
Hpy188III TCNNGA 4 cut(s) 323, 470, 779, 787
Hpy8I GTNNAC 7 cut(s) 52, 486, 723, 809, 819, 1118, 1297
Hpy99I CGWCG 1 cut(s) 1427
HpyAV CCTTC 2 cut(s) 94, 403
HpyCH4III ACNGT 4 cut(s) 295, 649, 795, 1103
HpyCH4IV ACGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 334, 548, 743
HpyF3I CTNAG 4 cut(s) 489, 780, 911, 1434
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 6 cut(s) 326, 409, 628, 711, 815, 849
HspAI GCGC 1 cut(s) 577
Kzo9I GATC 3 cut(s) 313, 359, 965
LmnI GCTCC 1 cut(s) 1027
LpnPI CCDG 7 cut(s) 211, 348, 402, 483, 760, 792, 1255
Lsp1109I GCAGC 1 cut(s) 1169
LweI GCATC 3 cut(s) 370, 403, 538
MaeI CTAG 2 cut(s) 929, 1247
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 1356, 1406
MalI GATC 3 cut(s) 315, 361, 967
MboI GATC 3 cut(s) 313, 359, 965
MboII GAAGA 7 cut(s) 38, 144, 353, 674, 1079, 1103, 1289
MfeI CAATTG 1 cut(s) 1272
MhlI GDGCHC 5 cut(s) 725, 821, 1032, 1120, 1299
MlyI GAGTC 6 cut(s) 596, 617, 629, 964, 1230, 1364
MmeI TCCRAC 3 cut(s) 516, 856, 1068
MnlI CCTC 7 cut(s) 58, 90, 175, 193, 872, 1065, 1387
Mph1103I ATGCAT 1 cut(s) 709
MroXI GAANNNNTTC 1 cut(s) 1041
MseI TTAA 4 cut(s) 573, 687, 798, 1148
MslI CAYNNNNRTG 4 cut(s) 57, 321, 1050, 1263
MunI CAATTG 1 cut(s) 1272
Mva1269I GAATGC 2 cut(s) 48, 748
MvnI CGCG 1 cut(s) 1123
MwoI GCNNNNNNNGC 3 cut(s) 334, 548, 743
NcoI CCATGG 1 cut(s) 624
NdeII GATC 3 cut(s) 313, 359, 965
NlaIII CATG 6 cut(s) 326, 409, 628, 711, 815, 849
NlaIV GGNNCC 1 cut(s) 926
NmuCI GTSAC 2 cut(s) 1356, 1406
NsiI ATGCAT 1 cut(s) 709
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 1 cut(s) 130
PagI TCATGA 1 cut(s) 322
PctI GAATGC 2 cut(s) 48, 748
PdmI GAANNNNTTC 1 cut(s) 1041
PfeI GAWTC 3 cut(s) 565, 1196, 1365
Pfl23II CGTACG 1 cut(s) 421
PkrI GCNGC 1 cut(s) 1159
PleI GAGTC 6 cut(s) 595, 616, 628, 964, 1229, 1363
PpsI GAGTC 6 cut(s) 595, 616, 628, 964, 1229, 1363
Psp124BI GAGCTC 1 cut(s) 1032
PspLI CGTACG 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 1 cut(s) 467
RsaI GTAC 3 cut(s) 51, 423, 988
RsaNI GTAC 3 cut(s) 50, 422, 987
RseI CAYNNNNRTG 4 cut(s) 57, 321, 1050, 1263
SacI GAGCTC 1 cut(s) 1032
SaqAI TTAA 4 cut(s) 573, 687, 798, 1148
SatI GCNGC 1 cut(s) 1158
Sau3AI GATC 3 cut(s) 313, 359, 965
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 6 cut(s) 596, 617, 629, 964, 1230, 1364
SduI GDGCHC 5 cut(s) 725, 821, 1032, 1120, 1299
SetI ASST 8 cut(s) 89, 330, 501, 560, 883, 1032, 1167, 1191
SfaNI GCATC 3 cut(s) 370, 403, 538
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 4 cut(s) 57, 321, 1050, 1263
SmlI CTYRAG 1 cut(s) 1324
SmoI CTYRAG 1 cut(s) 1324
SsiI CCGC 5 cut(s) 154, 272, 465, 542, 1121
SspMI CTAG 2 cut(s) 929, 1247
SstI GAGCTC 1 cut(s) 1032
StyI CCWWGG 2 cut(s) 624, 1161
TaaI ACNGT 4 cut(s) 295, 649, 795, 1103
TaiI ACGT 1 cut(s) 501
TaqI TCGA 4 cut(s) 130, 715, 968, 1353
TatI WGTACW 2 cut(s) 49, 986
TfiI GAWTC 3 cut(s) 565, 1196, 1365
Tru1I TTAA 4 cut(s) 573, 687, 798, 1148
Tru9I TTAA 4 cut(s) 573, 687, 798, 1148
TseFI GTSAC 2 cut(s) 1356, 1406
TseI GCWGC 1 cut(s) 1157
Tsp45I GTSAC 2 cut(s) 1356, 1406
VneI GTGCAC 4 cut(s) 721, 817, 1116, 1295
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 6 cut(s) 164, 833, 1037, 1202, 1397, 1418
XceI RCATGY 1 cut(s) 711
XmnI GAANNNNTTC 1 cut(s) 1041
XspI CTAG 2 cut(s) 929, 1247
ZraI GACGTC 1 cut(s) 499
Zsp2I ATGCAT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.