Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001167.1

Orthogroup ID

OG0000165

Physical Location & Seq

Genomic Coordinates Forward (+)

11459 .. 11929

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001167.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgcctacattaattgacatagaagacgatggagaacatagcatgggaactgctttgggaaaagattcaatgtttgtgaatcgtcaaactagtaatgatgatgacttgtatggagtgattgtgaatagtgaggaagaagcatataacctctactgtgagtatggtgctagaatggggtttagtgttcggataatgcagaggaggaaaaccaacaatgttgtgaagcaagttaattattgttgttcaaaagaaggttttaaactagatagtgatccttcggaagtgaaaaaggcagataggctggacattagaactggttgcacaacaaaaattcgatttggattgcaagataacaatttatggaaagcgactctctttgtccctgaacacaaccataagcttgcaaagcttgaagaaagacaatttttctccaatcgaaaagtttcaaatgctcatcagggggtgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE PEARLI-4 SWIM

Protein Analysis

156

Amino Acids

17.92

Weight (kDa)

6.9

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38180
fragaria_vesca	FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica	MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica	Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis	pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis	RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata	RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora	Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii	Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa	Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha	Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana	Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	330
AgsI	TTSAA	4 cut(s)	69, 246, 413, 447
AhlI	ACTAGT	1 cut(s)	89
AluBI	AGCT	2 cut(s)	400, 409
AluI	AGCT	2 cut(s)	400, 409
AlwI	GGATC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	330
AseI	ATTAAT	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	64, 442
BbsI	GAAGAC	1 cut(s)	30
BccI	CCATC	1 cut(s)	23
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	3 cut(s)	90, 168, 263
BpiI	GAAGAC	1 cut(s)	30
BsaBI	GATNNNNATC	1 cut(s)	270
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	270
BseJI	GATNNNNATC	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	214
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	402
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	402
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	301, 400, 409
CviKI_1	RGCY	3 cut(s)	301, 400, 409
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraI	TTTAAA	1 cut(s)	259
FaeI	CATG	1 cut(s)	46
FaiI	YATR	9 cut(s)	20, 39, 44, 111, 142, 144, 162, 361, 396
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	42
FspBI	CTAG	3 cut(s)	90, 168, 263
Hin1II	CATG	1 cut(s)	46
HindIII	AAGCTT	2 cut(s)	398, 407
HinfI	GANTC	3 cut(s)	65, 79, 370
Hpy188I	TCNGA	2 cut(s)	189, 280
HpyAV	CCTTC	2 cut(s)	245, 285
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	4 cut(s)	196, 321, 346, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	4 cut(s)	287, 300, 396, 443
MaeI	CTAG	3 cut(s)	90, 168, 263
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	35, 146, 425
MluCI	AATT	5 cut(s)	12, 232, 330, 355, 422
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	5 cut(s)	124, 158, 192, 195, 459
MroXI	GAANNNNTTC	2 cut(s)	64, 442
MseI	TTAA	3 cut(s)	11, 231, 258
MwoI	GCNNNNNNNGC	1 cut(s)	406
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	64, 442
PfeI	GAWTC	2 cut(s)	65, 79
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	11, 231, 258
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	364
SetI	ASST	5 cut(s)	150, 256, 402, 411, 470
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	5 cut(s)	12, 232, 330, 355, 422
SspMI	CTAG	3 cut(s)	90, 168, 263
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	334, 436
TasI	AATT	5 cut(s)	12, 232, 330, 355, 422
TfiI	GAWTC	2 cut(s)	65, 79
Tru1I	TTAA	3 cut(s)	11, 231, 258
Tru9I	TTAA	3 cut(s)	11, 231, 258
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	330
XmnI	GAANNNNTTC	2 cut(s)	64, 442
XspI	CTAG	3 cut(s)	90, 168, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.