Rh2DG142900

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000165
Physical Location & Seq
Reverse (-)
12040108 .. 12045631
5524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG142900.1

Sequence Viewer

Length: 591 bp
ATGTTAGAAAATGGTGATGAGGGATATCAGTTTGGAGATTGTGAGGAGCTAAAACTAGGGATGGAGGTGTCTAGTGAAGCTGAAGCTTATGAGCTGTGCAACAACTATGCATATAAGAAAGGGTTTAGTATTCGTAAAGGGCACCTTCGAAAAGATGCGCAGAATAATCCCAGGCAGAGAGAGTTTTTGTGTTCGAAAGAAGGGTTTCTGCGAGATGAGGACTTGTGTGAGGTGAAAAAGGTGAGGAGGTTGGAGACGAGGACGGGGTGCAAGGCTGCATTTCGGTTCAATGTGGAAAATGGTGTGTGGAAGATCTCTTACACTAATCCGCATCATAATCATGAGTTTGCGAGTCCTGAAGAAAGAAAATTTCTGAGATCGGGTAGAAATATACCGAGTGTTGGTGCAGCTATCGTTGGTTATAGGGTTGATGAGAGTAGCACACCAGTGAAAGCAGACCCAATCTTGGAAAAGGAATGTGGCAGTGCTGACAGTGTTGGTTGCAGAAAGAAGTCAACTTTGAACGGCGATTGTGACCTCAGACTCAGAAAGTCTCGTTCTTGGCAAAACAGGCGGTCAGCATCTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

196

Amino Acids

22.33

Weight (kDa)

8.74

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 116 1.5e-16 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 141
AciI CCGC 2 cut(s) 329, 574
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 102, 378
AfiI CCNNNNNNNGG 2 cut(s) 401, 466
AgsI TTSAA 2 cut(s) 289, 523
AjnI CCWGG 1 cut(s) 170
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 5 cut(s) 49, 80, 86, 94, 410
AluI AGCT 5 cut(s) 49, 80, 86, 94, 410
Alw26I GTCTC 2 cut(s) 248, 558
AlwNI CAGNNNCTG 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 275, 407
ApoI RAATTY 1 cut(s) 368
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 160
AsuHPI GGTGA 3 cut(s) 26, 244, 253
AsuII TTCGAA 2 cut(s) 148, 194
BaeGI GKGCMC 1 cut(s) 144
BanI GGYRCC 1 cut(s) 141
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BbvI GCAGC 2 cut(s) 262, 419
BccI CCATC 1 cut(s) 55
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 2 cut(s) 248, 558
BfaI CTAG 2 cut(s) 56, 72
BglII AGATCT 1 cut(s) 312
BisI GCNGC 2 cut(s) 276, 408
BlsI GCNGC 2 cut(s) 277, 409
Bme1390I CCNGG 1 cut(s) 172
BmiI GGNNCC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 2 cut(s) 145, 340
Bpu14I TTCGAA 2 cut(s) 148, 194
BsaJI CCNNGG 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 466
Bse1I ACTGG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 401, 466
BseMII CTCAG 3 cut(s) 365, 553, 559
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 2 cut(s) 59, 259
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 2 cut(s) 262, 419
BsgI GTGCAG 1 cut(s) 426
BshNI GGYRCC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 401, 466
BsmAI GTCTC 2 cut(s) 248, 558
BsmBI CGTCTC 1 cut(s) 248
Bsp119I TTCGAA 2 cut(s) 148, 194
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 2 cut(s) 312, 377
BspACI CCGC 2 cut(s) 329, 574
BspCNI CTCAG 3 cut(s) 366, 552, 558
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 143
BspT104I TTCGAA 2 cut(s) 148, 194
BspT107I GGYRCC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 170
BssMI GATC 2 cut(s) 312, 377
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 494
BstBI TTCGAA 2 cut(s) 148, 194
BstDEI CTNAG 3 cut(s) 374, 539, 545
BstF5I GGATG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 315, 380
BstMAI GTCTC 2 cut(s) 248, 558
BstMBI GATC 2 cut(s) 312, 377
BstMWI GCNNNNNNNGC 1 cut(s) 571
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 262, 419
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 453, 490, 499
CaiI CAGNNNCTG 1 cut(s) 584
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 160
CviAII CATG 1 cut(s) 341
CviJI RGCY 6 cut(s) 49, 80, 86, 94, 275, 410
CviKI_1 RGCY 6 cut(s) 49, 80, 86, 94, 275, 410
DdeI CTNAG 3 cut(s) 374, 539, 545
DpnI GATC 2 cut(s) 314, 379
DpnII GATC 2 cut(s) 312, 377
Eco32I GATATC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 102, 378
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 344
FaiI YATR 9 cut(s) 90, 108, 112, 114, 336, 342, 392, 423, 589
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 2 cut(s) 276, 408
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 2 cut(s) 276, 408
FspBI CTAG 2 cut(s) 56, 72
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 276, 408
HhaI GCGC 1 cut(s) 160
Hin1II CATG 1 cut(s) 344
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 2 cut(s) 352, 543
HphI GGTGA 3 cut(s) 26, 244, 253
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 375, 542, 548
Hpy188III TCNNGA 2 cut(s) 341, 356
Hpy8I GTNNAC 1 cut(s) 516
HpyAV CCTTC 2 cut(s) 155, 194
HpyCH4III ACNGT 1 cut(s) 494
HpyCH4V TGCA 6 cut(s) 99, 110, 270, 278, 407, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 571
HpyF3I CTNAG 3 cut(s) 374, 539, 545
Hsp92II CATG 1 cut(s) 344
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 312, 377
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 157, 184, 369, 459, 556
Lsp1109I GCAGC 2 cut(s) 262, 419
LweI GCATC 2 cut(s) 145, 340
MaeI CTAG 2 cut(s) 56, 72
MaeIII GTNAC 1 cut(s) 533
MalI GATC 2 cut(s) 314, 379
MboI GATC 2 cut(s) 312, 377
MboII GAAGA 2 cut(s) 322, 371
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 1 cut(s) 368
MlyI GAGTC 2 cut(s) 361, 537
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 9 cut(s) 13, 37, 58, 211, 223, 237, 240, 252, 548
Mph1103I ATGCAT 1 cut(s) 112
MroXI GAANNNNTTC 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 339, 446
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 571
NdeII GATC 2 cut(s) 312, 377
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 533
NsbI TGCGCA 1 cut(s) 159
NsiI ATGCAT 1 cut(s) 112
NspV TTCGAA 2 cut(s) 148, 194
OliI CACNNNNGTG 1 cut(s) 446
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 204
PkrI GCNGC 2 cut(s) 277, 409
PleI GAGTC 2 cut(s) 360, 537
PpsI GAGTC 2 cut(s) 360, 537
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 584
PsuI RGATCY 1 cut(s) 312
RseI CAYNNNNRTG 2 cut(s) 339, 446
SatI GCNGC 2 cut(s) 276, 408
Sau3AI GATC 2 cut(s) 312, 377
SchI GAGTC 2 cut(s) 361, 537
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 2 cut(s) 145, 340
SfuI TTCGAA 2 cut(s) 148, 194
SmiMI CAYNNNNRTG 2 cut(s) 339, 446
Sse9I AATT 1 cut(s) 368
SsiI CCGC 2 cut(s) 329, 574
SspMI CTAG 2 cut(s) 56, 72
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 148, 194
TasI AATT 1 cut(s) 368
TscAI CASTG 3 cut(s) 453, 490, 499
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 2 cut(s) 275, 407
Tsp45I GTSAC 1 cut(s) 533
TspRI CASTG 3 cut(s) 453, 490, 499
XapI RAATTY 1 cut(s) 368
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 2 cut(s) 56, 72
Zsp2I ATGCAT 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.