Rw5G035870

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000165
Physical Location & Seq
Reverse (-)
62352208 .. 62353510
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035870.1

Sequence Viewer

Length: 738 bp
ATGAATAGAGATGGAGCCAAAGATCGTAATCAAGTACTTGACGTACAAGATGATCAAGAACATAGCAAGACAATTGATTTGGGAAAAGATTCAATGATTGTGAATCGTCAAGCTAGTAATACTGACGACTTGTATGGAGTAATTGTGAATAGTGAGGAAGAAGCATACAACCTCTACTGTAAGTATGGTGCTAGAATGGGGTTTAGTGTTCAGATAATACAGAGGAGGAAAACCAACAACATTATGAGACAAGTTAATTATGCATGTTCAAAAGAAGTTTTTAAACTAGATAGTGATCCTTCAGAAGTGAAAAAGGCTGATAGGTTGGACACTAGAACTGGCTGCACAGCGAAAATTCGATTTGGATTGCAAGATAATAATGTATGGAAAGCAACTCTATTTGTTCCTGAACACAACCACAAGCTTGCAGAGCCAGAAGAAAGACCATTTTTGCGCTCCAATCGAAAAGTGTTAGAAGCTTATAAGGGGGTGATTAGATCAATGAAAAACGTAGGTATGAGTACCATAAATACATATTCATATTTAGCAGAAGAAGTTGGGGGATCTCAAAATGTTGGATTTACAAAGACTGATTGTTACAATTTTGTAAGCAGAGAGAGAATGATTATGCTAGAAGCACGGGATGCTCAAAGCTTGATCAATTTATTTAAGAAAAAGCAAATTGAAGATCCTATATGTTTTTCTACACCGTGCAAGTGGATCAAGAAAATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

245

Amino Acids

28.23

Weight (kDa)

8.78

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 58 - 143 5.9e-18 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
AclWI GGATC 4 cut(s) 290, 571, 683, 728
AcsI RAATTY 1 cut(s) 354
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 3 cut(s) 36, 45, 523
AgsI TTSAA 3 cut(s) 93, 270, 686
AluBI AGCT 4 cut(s) 113, 424, 479, 654
AluI AGCT 4 cut(s) 113, 424, 479, 654
Alw26I GTCTC 1 cut(s) 241
AlwI GGATC 4 cut(s) 290, 571, 683, 728
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 354
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
Asp700I GAANNNNTTC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 502
BbvI GCAGC 1 cut(s) 329
BccI CCATC 1 cut(s) 5
BclI TGATCA 2 cut(s) 52, 657
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 5 cut(s) 114, 192, 287, 333, 632
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
BmcAI AGTACT 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 16
BmsI GCATC 1 cut(s) 634
BsaBI GATNNNNATC 2 cut(s) 27, 294
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bse1I ACTGG 1 cut(s) 343
Bse8I GATNNNNATC 2 cut(s) 27, 294
BseGI GGATG 1 cut(s) 649
BseJI GATNNNNATC 2 cut(s) 27, 294
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 241
Bsp143I GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
BspLI GGNNCC 1 cut(s) 16
BspPI GGATC 4 cut(s) 290, 571, 683, 728
BsrI ACTGG 1 cut(s) 343
BssMI GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
Bst4CI ACNGT 2 cut(s) 179, 711
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 1 cut(s) 426
BstF5I GGATG 1 cut(s) 649
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 8 cut(s) 25, 55, 298, 500, 566, 660, 691, 723
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
BstMWI GCNNNNNNNGC 2 cut(s) 430, 644
BstNSI RCATGY 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 329
BstX2I RGATCY 2 cut(s) 563, 688
BstYI RGATCY 2 cut(s) 563, 688
BtsCI GGATG 1 cut(s) 649
Cac8I GCNNGC 1 cut(s) 426
CfoI GCGC 1 cut(s) 456
Csp6I GTAC 3 cut(s) 35, 44, 522
CviAII CATG 1 cut(s) 264
CviJI RGCY 8 cut(s) 17, 113, 317, 342, 424, 433, 479, 654
CviKI_1 RGCY 8 cut(s) 17, 113, 317, 342, 424, 433, 479, 654
CviQI GTAC 3 cut(s) 35, 44, 522
DpnI GATC 8 cut(s) 24, 54, 297, 499, 565, 659, 690, 722
DpnII GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
DraI TTTAAA 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 285
EcoT22I ATGCAT 1 cut(s) 265
FaeI CATG 1 cut(s) 267
FatI CATG 1 cut(s) 263
FbaI TGATCA 2 cut(s) 52, 657
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 5 cut(s) 114, 192, 287, 333, 632
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 456
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HindIII AAGCTT 3 cut(s) 422, 477, 652
HinfI GANTC 2 cut(s) 89, 103
HphI GGTGA 1 cut(s) 502
Hpy188I TCNGA 2 cut(s) 213, 304
Hpy188III TCNNGA 3 cut(s) 56, 407, 724
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 2 cut(s) 179, 711
HpyCH4IV ACGT 2 cut(s) 42, 510
HpyCH4V TGCA 5 cut(s) 263, 345, 370, 428, 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 430, 644
HpySE526I ACGT 2 cut(s) 42, 510
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 2 cut(s) 52, 657
Kzo9I GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
LmnI GCTCC 2 cut(s) 14, 461
LpnPI CCDG 3 cut(s) 324, 420, 447
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 634
MaeI CTAG 5 cut(s) 114, 192, 287, 333, 632
MaeII ACGT 2 cut(s) 42, 510
MaeIII GTNAC 1 cut(s) 596
MalI GATC 8 cut(s) 24, 54, 297, 499, 565, 659, 690, 722
MboI GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
MboII GAAGA 4 cut(s) 170, 449, 563, 698
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 2 cut(s) 563, 688
MluCI AATT 7 cut(s) 72, 141, 256, 354, 601, 661, 681
MmeI TCCRAC 2 cut(s) 306, 556
MnlI CCTC 4 cut(s) 148, 182, 216, 219
Mph1103I ATGCAT 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 88
MseI TTAA 3 cut(s) 255, 282, 669
MunI CAATTG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 430, 644
NdeII GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 89, 103
PkrI GCNGC 1 cut(s) 344
PsiI TTATAA 1 cut(s) 483
PspN4I GGNNCC 1 cut(s) 16
PsuI RGATCY 2 cut(s) 563, 688
RsaI GTAC 3 cut(s) 36, 45, 523
RsaNI GTAC 3 cut(s) 35, 44, 522
SaqAI TTAA 3 cut(s) 255, 282, 669
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 8 cut(s) 22, 52, 295, 497, 563, 657, 688, 720
ScaI AGTACT 1 cut(s) 36
SetI ASST 9 cut(s) 45, 115, 174, 326, 426, 481, 513, 517, 656
SfaNI GCATC 1 cut(s) 634
Sse9I AATT 7 cut(s) 72, 141, 256, 354, 601, 661, 681
SspMI CTAG 5 cut(s) 114, 192, 287, 333, 632
TaaI ACNGT 2 cut(s) 179, 711
TaiI ACGT 2 cut(s) 45, 513
TaqI TCGA 3 cut(s) 358, 463, 732
TasI AATT 7 cut(s) 72, 141, 256, 354, 601, 661, 681
TatI WGTACW 1 cut(s) 34
TfiI GAWTC 2 cut(s) 89, 103
Tru1I TTAA 3 cut(s) 255, 282, 669
Tru9I TTAA 3 cut(s) 255, 282, 669
TseI GCWGC 1 cut(s) 342
TspDTI ATGAA 3 cut(s) 17, 518, 528
XapI RAATTY 1 cut(s) 354
XceI RCATGY 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 88
XspI CTAG 5 cut(s) 114, 192, 287, 333, 632
ZrmI AGTACT 1 cut(s) 36
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.