Rmu_sc0006475.1_g000010

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006475.1
OG0000165
Physical Location & Seq
Forward (+)
64776 .. 69217
4442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006475.1_g000010.1.cds

Sequence Viewer

Length: 894 bp
atggcgcgccgaaagtctcctccttcgtcgctgctgtgcgccgcggcaactaccggaccggagaaaaacaatggtgaatgtcctgcttcgggcatgatgcagaagctatctgggctgcaatggattctggtgaatcctaggtttggtagatacaatgaaagatatcattctggtgtgtctttttgcatctctccgatccaccacctgtacccaaagaccacattgaatgacctcatcaatgacctctttggacatcttgatgctctagccatttccaaggtgtttaatactaataatatcactagtttaccgactcagtatgcattgaagaggtggactaaagaagcaaagaaagggattgtggtgagcaatgatactggtggaggaacaagtgagaattcaaagtctgctagagtattgcgccttatagaattgatgcatgaaggaaatattgtgtatgacatagcctcactaactagttcaggtactaaaattgtcaaggacctgttaacagaggaaatgaagcgccttgaaaaagacaaggacaccctgtacgtgttggaaaatttgaagaaatatggtgacgagtccgagtctggcaatcttggtaatgagccaccagttttgaatccaccaagtgcaaagaccaaaggaatgaaaaatgctagaatcaaagatgtgagggagacaaaccaacgaaagaacataacaaaagaacaagaaaacaaagaaaacgatgagtcttatgatccaaaagctccaaatgatgtgtctgcatgtagtcaacactttggtgtacctaacaccccatttcataatcaggtttccttgatgcagtacgaagaggagcattctgtgagaattgaagacatgtttggaactaattttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

297

Amino Acids

33.22

Weight (kDa)

7.09

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 7, 44
AciI CCGC 2 cut(s) 42, 44
AclWI GGATC 2 cut(s) 190, 743
AcsI RAATTY 2 cut(s) 397, 565
AdeI CACNNNGTG 1 cut(s) 638
AfaI GTAC 5 cut(s) 209, 487, 554, 798, 839
AfiI CCNNNNNNNGG 2 cut(s) 89, 143
AflIII ACRYGT 2 cut(s) 555, 870
AgsI TTSAA 7 cut(s) 226, 328, 402, 533, 571, 628, 866
AhlI ACTAGT 2 cut(s) 302, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AleI CACNNNNGTG 1 cut(s) 792
AluBI AGCT 2 cut(s) 106, 758
AluI AGCT 2 cut(s) 106, 758
Alw26I GTCTC 2 cut(s) 21, 680
AlwI GGATC 2 cut(s) 190, 743
ApeKI GCWGC 2 cut(s) 31, 115
ApoI RAATTY 2 cut(s) 397, 565
ArsI GACNNNNNNTTYG 2 cut(s) 755, 787
AscI GGCGCGCC 1 cut(s) 5
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 5 cut(s) 7, 9, 41, 423, 528
AspS9I GGNCC 2 cut(s) 56, 502
AsuHPI GGTGA 4 cut(s) 86, 142, 376, 593
AvaII GGWCC 2 cut(s) 56, 502
AvrII CCTAGG 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 873
BbvI GCAGC 2 cut(s) 18, 102
BcoDI GTCTC 2 cut(s) 21, 680
BcuI ACTAGT 2 cut(s) 302, 476
BfaI CTAG 6 cut(s) 138, 266, 303, 411, 477, 666
BfoI RGCGCY 1 cut(s) 529
BisI GCNGC 4 cut(s) 32, 42, 45, 116
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 4 cut(s) 33, 43, 46, 117
Bme18I GGWCC 2 cut(s) 56, 502
BmgT120I GGNCC 2 cut(s) 56, 502
BmsI GCATC 5 cut(s) 87, 195, 250, 426, 822
BpiI GAAGAC 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 556
BsaJI CCNNGG 3 cut(s) 42, 137, 276
BsaWI WCCGGW 2 cut(s) 53, 58
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 143
Bse1I ACTGG 2 cut(s) 382, 620
Bse3DI GCAATG 2 cut(s) 125, 376
BseDI CCNNGG 3 cut(s) 42, 137, 276
BseLI CCNNNNNNNGG 2 cut(s) 89, 143
BseMI GCAATG 2 cut(s) 125, 376
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 2 cut(s) 382, 620
BsePI GCGCGC 1 cut(s) 5
BseRI GAGGAG 2 cut(s) 9, 860
BseXI GCAGC 2 cut(s) 18, 102
Bsh1236I CGCG 2 cut(s) 7, 44
BsiSI CCGG 2 cut(s) 54, 59
BslI CCNNNNNNNGG 2 cut(s) 89, 143
BsmAI GTCTC 2 cut(s) 21, 680
BsmI GAATGC 1 cut(s) 850
Bsp143I GATC 2 cut(s) 195, 748
BspACI CCGC 2 cut(s) 42, 44
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 2 cut(s) 7, 44
BspPI GGATC 2 cut(s) 190, 743
BsrDI GCAATG 2 cut(s) 125, 376
BsrI ACTGG 2 cut(s) 382, 620
BssECI CCNNGG 3 cut(s) 42, 137, 276
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 2 cut(s) 195, 748
BssT1I CCWWGG 2 cut(s) 137, 276
Bst6I CTCTTC 2 cut(s) 323, 837
BstBAI YACGTR 1 cut(s) 556
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 1 cut(s) 42
BstFNI CGCG 2 cut(s) 7, 44
BstH2I RGCGCY 1 cut(s) 529
BstHHI GCGC 5 cut(s) 7, 9, 41, 423, 528
BstKTI GATC 2 cut(s) 198, 751
BstMAI GTCTC 2 cut(s) 21, 680
BstMBI GATC 2 cut(s) 195, 748
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 780, 874
BstUI CGCG 2 cut(s) 7, 44
BstV1I GCAGC 2 cut(s) 18, 102
BstV2I GAAGAC 1 cut(s) 873
BtgI CCRYGG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 5 cut(s) 7, 9, 41, 423, 528
Cfr13I GGNCC 2 cut(s) 56, 502
Cfr42I CCGCGG 1 cut(s) 45
CpoI CGGWCCG 1 cut(s) 56
Csp6I GTAC 5 cut(s) 208, 486, 553, 797, 838
CspCI CAANNNNNGTGG 2 cut(s) 606, 641
CspI CGGWCCG 1 cut(s) 56
CviAII CATG 4 cut(s) 94, 440, 777, 871
CviJI RGCY 6 cut(s) 106, 115, 269, 467, 616, 758
CviKI_1 RGCY 6 cut(s) 106, 115, 269, 467, 616, 758
CviQI GTAC 5 cut(s) 208, 486, 553, 797, 838
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 197, 750
DpnII GATC 2 cut(s) 195, 748
DraIII CACNNNGTG 1 cut(s) 638
Eam1104I CTCTTC 2 cut(s) 323, 837
EarI CTCTTC 2 cut(s) 323, 837
Eco130I CCWWGG 2 cut(s) 137, 276
Eco32I GATATC 1 cut(s) 164
Eco47I GGWCC 2 cut(s) 56, 502
EcoO109I RGGNCCY 1 cut(s) 502
EcoRI GAATTC 1 cut(s) 397
EcoRV GATATC 1 cut(s) 164
EcoT14I CCWWGG 2 cut(s) 137, 276
EcoT22I ATGCAT 2 cut(s) 325, 441
ErhI CCWWGG 2 cut(s) 137, 276
FaeI CATG 4 cut(s) 97, 443, 780, 874
FatI CATG 4 cut(s) 93, 439, 776, 870
Fnu4HI GCNGC 4 cut(s) 32, 42, 45, 116
Fsp4HI GCNGC 4 cut(s) 32, 42, 45, 116
FspBI CTAG 6 cut(s) 138, 266, 303, 411, 477, 666
GlaI GCGC 5 cut(s) 6, 8, 40, 422, 527
GluI GCNGC 4 cut(s) 32, 42, 45, 116
HaeII RGCGCY 1 cut(s) 529
HapII CCGG 2 cut(s) 54, 59
HhaI GCGC 5 cut(s) 7, 9, 41, 423, 528
Hin1II CATG 4 cut(s) 97, 443, 780, 874
Hin6I GCGC 5 cut(s) 5, 7, 39, 421, 526
HinP1I GCGC 5 cut(s) 5, 7, 39, 421, 526
HincII GTYRAC 2 cut(s) 510, 785
HindII GTYRAC 2 cut(s) 510, 785
HinfI GANTC 8 cut(s) 124, 133, 313, 587, 593, 628, 669, 740
HpaI GTTAAC 1 cut(s) 510
HpaII CCGG 2 cut(s) 54, 59
HphI GGTGA 4 cut(s) 86, 142, 376, 593
Hpy166II GTNNAC 5 cut(s) 308, 336, 510, 785, 797
Hpy188I TCNGA 2 cut(s) 195, 592
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 5 cut(s) 308, 336, 510, 785, 797
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 33, 437
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 8 cut(s) 100, 118, 186, 323, 439, 641, 776, 835
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 4 cut(s) 97, 443, 780, 874
HspAI GCGC 5 cut(s) 5, 7, 39, 421, 526
KspAI GTTAAC 1 cut(s) 510
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 2 cut(s) 195, 748
LmnI GCTCC 2 cut(s) 763, 847
Lsp1109I GCAGC 2 cut(s) 18, 102
LweI GCATC 5 cut(s) 87, 195, 250, 426, 822
MaeI CTAG 6 cut(s) 138, 266, 303, 411, 477, 666
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 581
MalI GATC 2 cut(s) 197, 750
MboI GATC 2 cut(s) 195, 748
MboII GAAGA 4 cut(s) 340, 583, 854, 878
MluCI AATT 6 cut(s) 397, 431, 492, 565, 861, 883
MlyI GAGTC 4 cut(s) 307, 596, 602, 749
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 9 cut(s) 30, 242, 254, 324, 377, 478, 508, 675, 838
Mph1103I ATGCAT 2 cut(s) 325, 441
MseI TTAA 2 cut(s) 285, 509
MslI CAYNNNNRTG 3 cut(s) 171, 258, 792
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 54, 59
Mva1269I GAATGC 1 cut(s) 850
MvnI CGCG 2 cut(s) 7, 44
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 2 cut(s) 195, 748
NlaIII CATG 4 cut(s) 97, 443, 780, 874
NmuCI GTSAC 1 cut(s) 581
NsiI ATGCAT 2 cut(s) 325, 441
NspI RCATGY 2 cut(s) 780, 874
OliI CACNNNNGTG 1 cut(s) 792
PalAI GGCGCGCC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 5
PciI ACATGT 1 cut(s) 870
PctI GAATGC 1 cut(s) 850
PfeI GAWTC 4 cut(s) 124, 133, 628, 669
PkrI GCNGC 4 cut(s) 33, 43, 46, 117
PleI GAGTC 4 cut(s) 307, 595, 601, 748
PpsI GAGTC 4 cut(s) 307, 595, 601, 748
Ppu21I YACGTR 1 cut(s) 556
PpuMI RGGWCCY 1 cut(s) 502
PscI ACATGT 1 cut(s) 870
Psp5II RGGWCCY 1 cut(s) 502
PspPI GGNCC 2 cut(s) 56, 502
PspPPI RGGWCCY 1 cut(s) 502
PteI GCGCGC 1 cut(s) 5
RsaI GTAC 5 cut(s) 209, 487, 554, 798, 839
RsaNI GTAC 5 cut(s) 208, 486, 553, 797, 838
RseI CAYNNNNRTG 3 cut(s) 171, 258, 792
Rsr2I CGGWCCG 1 cut(s) 56
RsrII CGGWCCG 1 cut(s) 56
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 2 cut(s) 285, 509
SatI GCNGC 4 cut(s) 32, 42, 45, 116
Sau3AI GATC 2 cut(s) 195, 748
Sau96I GGNCC 2 cut(s) 56, 502
SchI GAGTC 4 cut(s) 307, 596, 602, 749
SfaNI GCATC 5 cut(s) 87, 195, 250, 426, 822
Sfr303I CCGCGG 1 cut(s) 45
SgrBI CCGCGG 1 cut(s) 45
SgsI GGCGCGCC 1 cut(s) 5
SinI GGWCC 2 cut(s) 56, 502
SmiMI CAYNNNNRTG 3 cut(s) 171, 258, 792
SpeI ACTAGT 2 cut(s) 302, 476
Sse9I AATT 6 cut(s) 397, 431, 492, 565, 861, 883
SsiI CCGC 2 cut(s) 42, 44
SspI AATATT 1 cut(s) 451
SspMI CTAG 6 cut(s) 138, 266, 303, 411, 477, 666
StyI CCWWGG 2 cut(s) 137, 276
TaiI ACGT 1 cut(s) 558
TasI AATT 6 cut(s) 397, 431, 492, 565, 861, 883
TauI GCSGC 2 cut(s) 44, 47
TfiI GAWTC 4 cut(s) 124, 133, 628, 669
Tru1I TTAA 2 cut(s) 285, 509
Tru9I TTAA 2 cut(s) 285, 509
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 2 cut(s) 31, 115
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 5 cut(s) 171, 456, 536, 671, 803
VpaK11BI GGWCC 2 cut(s) 56, 502
XapI RAATTY 2 cut(s) 397, 565
XceI RCATGY 2 cut(s) 780, 874
XmaJI CCTAGG 1 cut(s) 137
XspI CTAG 6 cut(s) 138, 266, 303, 411, 477, 666
Zsp2I ATGCAT 2 cut(s) 325, 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.