Rroxscaffold_2G00142230

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000165
Physical Location & Seq
Forward (+)
80345902 .. 80346966
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142230.1

Sequence Viewer

Length: 1065 bp
ATGGGAAATAAACAGCCTAAAACCATTTTTACAGATGAGGATAATGCCATGGAAAAAGCGATTGAAATTATACTTCCAGGAACACATCATCGACTATGCACATGGAACATCTCTAAGAATGCTTCACAATATCTTGGTAGCCACCTTGCTAATCCTGAGTTCAAGGAATGCTTTAACAAATGTTTTCATGATTGTGTCACCAAAGCAGAATTTGAAGCTACGTGGGATGATATGGTTAAAAAGTTCAACCTTGAGAATAACTTTTGGCTGAAAAAGTTATATTTACTTCGAGAGAAATGGTGTCCTGCTTTTAGCTCAGACACTTTCACAGCCAATATCGGATGTGACCAGAGGGGTGAGAACATTAATACTACTTTCCATCAAATTTCTACAAAAACAATGGATCTCATTGGTTTGGCACAGCATTACGAGAAAAAAACAAAAGTGTTACGATCAGCAGAGGCGGAAGAGGATTTTCGTTGTAAAAATGGTATGCCTCGTCTTAAAGTGAACACGGGTATCTTTAAGCATGCAGCTGCAGAGTACACTATTAAAATGTATTCATTCTTTGAAAATGAGCTTTTAAGTACCTTTGGGGTGAGGATGATGGAAGTTGGTAAAGATGGCAACCAGTATGTATATGAAGCAATTGAAGAAGGTCATCAAAGAGTCTACATTATTGAGTACAACTCCACTACTTCCATGATTTGCTGTTCATGTAAGTTATTTGAATCCATGGGAGTGTTGTGTCGTCATGCCCTGAAGGTATTGGATCTTAAAAACTTCATGAGCATACCAGCCCAATACATAGTGAAGAGATGGACTCGAGGGGCGAAAAAACAGAATGTGATGAGTGGTGGTTTATGTGAGCTCTCATGTAAAACGGCAAAGTCTGCCCAATCACTGCGCCTGAGTGAGTTGATGCATGAAGGGAATAATGTTTTCAGTATAGGCTCATTGTGTGATTCTGGAACAAGAATTGTCAAACAAAAGTTGGTAGAGGCCATGAAGTTGCTTGAAAGTGATAAGGAAACTACATCCATGCTGGGAACTTTGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

354

Amino Acids

40.44

Weight (kDa)

8.42

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 2 - 40 2.5e-08 MULE transposase domain
SWIM PF04434 235 - 257 8.5e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 672
AciI CCGC 1 cut(s) 464
AclWI GGATC 2 cut(s) 411, 780
AcsI RAATTY 2 cut(s) 209, 384
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 3 cut(s) 545, 589, 686
AgsI TTSAA 9 cut(s) 65, 163, 215, 247, 572, 653, 731, 1019, 1057
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 5 cut(s) 218, 315, 536, 580, 871
AluI AGCT 5 cut(s) 218, 315, 536, 580, 871
Alw21I GWGCWC 1 cut(s) 873
AlwI GGATC 2 cut(s) 411, 780
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 1 cut(s) 1002
ApeKI GCWGC 2 cut(s) 533, 536
ApoI RAATTY 2 cut(s) 209, 384
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 909
AsuHPI GGTGA 3 cut(s) 190, 368, 610
AvaI CYCGRG 1 cut(s) 825
BaeI ACNNNNGTAYC 2 cut(s) 502, 535
BanII GRGCYC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 873
BbvI GCAGC 2 cut(s) 523, 545
BccI CCATC 4 cut(s) 387, 601, 617, 813
BceAI ACGGC 1 cut(s) 900
BciT130I CCWGG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 537
BisI GCNGC 2 cut(s) 534, 537
BlsI GCNGC 2 cut(s) 535, 538
Bme1390I CCNGG 1 cut(s) 78
BmeT110I CYCGRG 1 cut(s) 825
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 912
BplI GAGNNNNNCTC 4 cut(s) 674, 706, 808, 840
BpuEI CTTGAG 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 48, 735
Bse1I ACTGG 1 cut(s) 631
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 48, 735
BseGI GGATG 4 cut(s) 232, 347, 609, 1037
BseMII CTCAG 3 cut(s) 147, 330, 902
BseNI ACTGG 1 cut(s) 631
BseXI GCAGC 2 cut(s) 523, 545
BseYI CCCAGC 1 cut(s) 1045
BshFI GGCC 1 cut(s) 1004
BsiHKAI GWGCWC 1 cut(s) 873
BsiHKCI CYCGRG 1 cut(s) 825
BsmI GAATGC 2 cut(s) 124, 173
BsnI GGCC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 825
Bsp1286I GDGCHC 1 cut(s) 873
Bsp143I GATC 3 cut(s) 403, 452, 772
Bsp19I CCATGG 2 cut(s) 48, 735
BspACI CCGC 1 cut(s) 464
BspANI GGCC 1 cut(s) 1004
BspCNI CTCAG 3 cut(s) 148, 329, 903
BspHI TCATGA 2 cut(s) 187, 786
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 2 cut(s) 411, 780
BsrI ACTGG 1 cut(s) 631
BssECI CCNNGG 2 cut(s) 48, 735
BssMI GATC 3 cut(s) 403, 452, 772
BssT1I CCWWGG 2 cut(s) 48, 735
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 2 cut(s) 462, 809
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 4 cut(s) 114, 156, 316, 911
BstDSI CCRYGG 2 cut(s) 48, 735
BstF5I GGATG 4 cut(s) 232, 347, 609, 1037
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 3 cut(s) 406, 455, 775
BstMBI GATC 3 cut(s) 403, 452, 772
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 523, 545
BstX2I RGATCY 2 cut(s) 403, 772
BstYI RGATCY 2 cut(s) 403, 772
BsuRI GGCC 1 cut(s) 1004
BtgI CCRYGG 2 cut(s) 48, 735
BtsCI GGATG 4 cut(s) 232, 347, 609, 1037
BtsI GCAGTG 1 cut(s) 902
BtsIMutI CAGTG 1 cut(s) 902
Cac8I GCNNGC 1 cut(s) 531
CciI TCATGA 2 cut(s) 187, 786
CfoI GCGC 1 cut(s) 909
Csp6I GTAC 3 cut(s) 544, 588, 685
CviQI GTAC 3 cut(s) 544, 588, 685
DdeI CTNAG 4 cut(s) 114, 156, 316, 911
DpnI GATC 3 cut(s) 405, 454, 774
DpnII GATC 3 cut(s) 403, 452, 772
Eam1104I CTCTTC 2 cut(s) 462, 809
EarI CTCTTC 2 cut(s) 462, 809
EciI GGCGGA 1 cut(s) 479
Ecl136II GAGCTC 1 cut(s) 871
Eco130I CCWWGG 2 cut(s) 48, 735
Eco24I GRGCYC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 871
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 871
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 48, 735
EcoT22I ATGCAT 1 cut(s) 927
EcoT38I GRGCYC 1 cut(s) 873
ErhI CCWWGG 2 cut(s) 48, 735
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 2 cut(s) 534, 537
FokI GGATG 4 cut(s) 239, 354, 616, 1024
FriOI GRGCYC 1 cut(s) 873
Fsp4HI GCNGC 2 cut(s) 534, 537
GlaI GCGC 1 cut(s) 908
GluI GCNGC 2 cut(s) 534, 537
GsaI CCCAGC 1 cut(s) 1049
HaeIII GGCC 1 cut(s) 1004
HhaI GCGC 1 cut(s) 909
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HinfI GANTC 4 cut(s) 669, 731, 823, 965
HphI GGTGA 3 cut(s) 190, 368, 610
Hpy166II GTNNAC 3 cut(s) 511, 546, 673
Hpy188I TCNGA 2 cut(s) 319, 341
Hpy188III TCNNGA 5 cut(s) 155, 188, 290, 787, 969
Hpy8I GTNNAC 3 cut(s) 511, 546, 673
HpyAV CCTTC 3 cut(s) 650, 757, 923
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 4 cut(s) 99, 533, 539, 925
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 4 cut(s) 114, 156, 316, 911
HpySE526I ACGT 1 cut(s) 221
HspAI GCGC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 403, 452, 772
Lsp1109I GCAGC 2 cut(s) 523, 545
LweI GCATC 1 cut(s) 912
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 3 cut(s) 196, 344, 447
MalI GATC 3 cut(s) 405, 454, 774
MboI GATC 3 cut(s) 403, 452, 772
MboII GAAGA 3 cut(s) 479, 665, 826
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 403, 772
MhlI GDGCHC 1 cut(s) 873
MluCI AATT 5 cut(s) 66, 209, 384, 648, 978
MlyI GAGTC 2 cut(s) 678, 817
MnlI CCTC 8 cut(s) 31, 345, 454, 463, 507, 594, 821, 994
Mph1103I ATGCAT 1 cut(s) 927
MseI TTAA 8 cut(s) 174, 237, 366, 504, 525, 552, 584, 777
MslI CAYNNNNRTG 2 cut(s) 192, 740
MspA1I CMGCKG 1 cut(s) 536
MspR9I CCNGG 1 cut(s) 78
MunI CAATTG 1 cut(s) 648
Mva1269I GAATGC 2 cut(s) 124, 173
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 893
NcoI CCATGG 2 cut(s) 48, 735
NdeII GATC 3 cut(s) 403, 452, 772
NmuCI GTSAC 2 cut(s) 196, 344
NsiI ATGCAT 1 cut(s) 927
NspI RCATGY 1 cut(s) 533
PaeI GCATGC 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 825
PagI TCATGA 2 cut(s) 187, 786
PctI GAATGC 2 cut(s) 124, 173
PfeI GAWTC 2 cut(s) 731, 965
PfoI TCCNGGA 1 cut(s) 76
PkrI GCNGC 2 cut(s) 535, 538
PleI GAGTC 2 cut(s) 677, 817
PpsI GAGTC 2 cut(s) 677, 817
Ppu21I YACGTR 1 cut(s) 222
PshBI ATTAAT 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 873
Psp6I CCWGG 1 cut(s) 76
PspFI CCCAGC 1 cut(s) 1045
PspGI CCWGG 1 cut(s) 76
PspXI VCTCGAGB 1 cut(s) 825
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 2 cut(s) 403, 772
PvuII CAGCTG 1 cut(s) 536
RsaI GTAC 3 cut(s) 545, 589, 686
RsaNI GTAC 3 cut(s) 544, 588, 685
RseI CAYNNNNRTG 2 cut(s) 192, 740
SacI GAGCTC 1 cut(s) 873
SaqAI TTAA 8 cut(s) 174, 237, 366, 504, 525, 552, 584, 777
SatI GCNGC 2 cut(s) 534, 537
Sau3AI GATC 3 cut(s) 403, 452, 772
SchI GAGTC 2 cut(s) 678, 817
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 873
SfaNI GCATC 1 cut(s) 912
SfcI CTRYAG 1 cut(s) 537
Sfr274I CTCGAG 1 cut(s) 825
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 2 cut(s) 192, 740
SmlI CTYRAG 2 cut(s) 251, 825
SmoI CTYRAG 2 cut(s) 251, 825
SphI GCATGC 1 cut(s) 533
Sse9I AATT 5 cut(s) 66, 209, 384, 648, 978
SsiI CCGC 1 cut(s) 464
SstI GAGCTC 1 cut(s) 873
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 48, 735
TaiI ACGT 1 cut(s) 224
TaqI TCGA 3 cut(s) 91, 289, 826
TasI AATT 5 cut(s) 66, 209, 384, 648, 978
TatI WGTACW 2 cut(s) 543, 684
TfiI GAWTC 2 cut(s) 731, 965
Tru1I TTAA 8 cut(s) 174, 237, 366, 504, 525, 552, 584, 777
Tru9I TTAA 8 cut(s) 174, 237, 366, 504, 525, 552, 584, 777
TscAI CASTG 1 cut(s) 909
TseFI GTSAC 2 cut(s) 196, 344
TseI GCWGC 2 cut(s) 533, 536
Tsp45I GTSAC 2 cut(s) 196, 344
TspDTI ATGAA 7 cut(s) 176, 552, 657, 705, 775, 942, 1022
TspRI CASTG 1 cut(s) 909
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 2 cut(s) 209, 384
XceI RCATGY 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 672
Zsp2I ATGCAT 1 cut(s) 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.