Rroxscaffold_3G00240150

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000165
Physical Location & Seq
Reverse (-)
31819027 .. 31827106
8080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240150.1

Sequence Viewer

Length: 591 bp
ATGGGCAAAGAAAATGATAATGAAACGAGACAAAAAGCCTCGGAACCGAGACAAAACTCAGAGAAAAACACACCACGAGAGGGTGGAGAAGCTGTTAACCGACTCTCAAAAACTGCAAAGAGAGTTTTCACCGAGGAGAGAATGGAGGAGATTATTGGAGAAGATGGAGAACTAAAACTGGGTATGCAAGTACATTCTGATGATGAAGCTTATAATCTATACAATAATTATGCTTTGAGAAAAGCATTTAGTATTTGTTTGCAAGAGACCAAGATGCATTGGAACATAAAAGATATAAGAACGTGCTTGTATCACCCCACCATCCGGATTCCAAAATGCTCCATAAACAAAGCCACTAGTGGACGACATGTTGCAAAGCTCAAAAGCTTGTCTCCTAAAGATGAAAGTTCCAACAGCTTTTGTGGAGGAAAAGTGACCACGTTGGTGACCACTTCCTTTTCTTTTGACAAGCTGCTGGTCCGCATCGAAGAGGTGTCCCTATCCCTTGAGCAACCTCCCATGTTGAATGACGACCATCACCGCCGCAACACCGTCGGAAAGAAGTGGCCCGAGTGTAAAGCCCACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

196

Amino Acids

22.41

Weight (kDa)

8.54

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 3 cut(s) 481, 541, 544
AfaI GTAC 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 80, 324
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 1 cut(s) 526
AhlI ACTAGT 1 cut(s) 356
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 6 cut(s) 92, 209, 379, 387, 417, 472
AluI AGCT 6 cut(s) 92, 209, 379, 387, 417, 472
Alw26I GTCTC 4 cut(s) 22, 43, 260, 396
Ama87I CYCGRG 1 cut(s) 569
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 478, 567
AsuHPI GGTGA 4 cut(s) 121, 305, 457, 530
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 478
BauI CACGAG 1 cut(s) 75
BbvI GCAGC 1 cut(s) 459
BccI CCATC 3 cut(s) 158, 329, 543
BcgI CGANNNNNNTGC 2 cut(s) 535, 569
BcoDI GTCTC 4 cut(s) 22, 43, 260, 396
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 357, 589
BisI GCNGC 2 cut(s) 473, 544
BlsI GCNGC 2 cut(s) 474, 545
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 478, 567
BmiI GGNNCC 1 cut(s) 45
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 264, 492
BmuI ACTGGG 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 39, 132
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 324
Bse1I ACTGG 1 cut(s) 183
BseAI TCCGGA 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 39, 132
BseGI GGATG 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 80, 324
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 2 cut(s) 149, 161
BseXI GCAGC 1 cut(s) 459
BshFI GGCC 1 cut(s) 568
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 481
BslI CCNNNNNNNGG 2 cut(s) 80, 324
BsmAI GTCTC 4 cut(s) 22, 43, 260, 396
BsmFI GGGAC 1 cut(s) 481
BsnI GGCC 1 cut(s) 568
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 569
Bsp13I TCCGGA 1 cut(s) 324
BspACI CCGC 3 cut(s) 481, 541, 544
BspANI GGCC 1 cut(s) 568
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 2 cut(s) 39, 132
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 483
BstDEI CTNAG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 445
BstF5I GGATG 1 cut(s) 321
BstMAI GTCTC 4 cut(s) 22, 43, 260, 396
BstNSI RCATGY 1 cut(s) 371
BstPI GGTNACC 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 459
BsuRI GGCC 1 cut(s) 568
BtsCI GGATG 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 478, 567
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 368, 520
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 478
Eco88I CYCGRG 1 cut(s) 569
Eco91I GGTNACC 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 279
FaeI CATG 2 cut(s) 371, 523
FaiI YATR 9 cut(s) 185, 213, 220, 231, 287, 296, 344, 369, 521
FaqI GGGAC 1 cut(s) 481
FatI CATG 2 cut(s) 367, 519
Fnu4HI GCNGC 2 cut(s) 473, 544
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 473, 544
FspBI CTAG 2 cut(s) 357, 589
GluI GCNGC 2 cut(s) 473, 544
HaeIII GGCC 1 cut(s) 568
HapII CCGG 1 cut(s) 325
Hin1II CATG 2 cut(s) 371, 523
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 207, 385
HinfI GANTC 2 cut(s) 102, 328
HpaI GTTAAC 1 cut(s) 97
HpaII CCGG 1 cut(s) 325
HphI GGTGA 4 cut(s) 121, 305, 457, 530
Hpy166II GTNNAC 2 cut(s) 97, 362
Hpy188I TCNGA 4 cut(s) 43, 61, 199, 557
Hpy188III TCNNGA 1 cut(s) 325
Hpy8I GTNNAC 2 cut(s) 97, 362
Hpy99I CGWCG 1 cut(s) 557
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4IV ACGT 2 cut(s) 302, 440
HpyCH4V TGCA 5 cut(s) 116, 187, 262, 277, 374
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 2 cut(s) 302, 440
Hsp92II CATG 2 cut(s) 371, 523
Kpn2I TCCGGA 1 cut(s) 324
KspAI GTTAAC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 3 cut(s) 164, 338, 461
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 2 cut(s) 264, 492
MaeI CTAG 2 cut(s) 357, 589
MaeII ACGT 2 cut(s) 302, 440
MaeIII GTNAC 2 cut(s) 433, 445
MboII GAAGA 2 cut(s) 173, 500
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 2 cut(s) 435, 535
MnlI CCTC 7 cut(s) 49, 73, 127, 139, 419, 484, 525
Mph1103I ATGCAT 1 cut(s) 279
MroI TCCGGA 1 cut(s) 324
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 2 cut(s) 198, 443
MspI CCGG 1 cut(s) 325
NlaIII CATG 2 cut(s) 371, 523
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 2 cut(s) 433, 445
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 371
OliI CACNNNNGTG 1 cut(s) 443
PciI ACATGT 1 cut(s) 367
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 474, 545
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PscI ACATGT 1 cut(s) 367
PsiI TTATAA 1 cut(s) 213
PspEI GGTNACC 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 478, 567
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
RseI CAYNNNNRTG 2 cut(s) 198, 443
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 2 cut(s) 473, 544
Sau96I GGNCC 2 cut(s) 478, 567
SchI GAGTC 1 cut(s) 96
SfaNI GCATC 2 cut(s) 264, 492
SinI GGWCC 1 cut(s) 478
SmiMI CAYNNNNRTG 2 cut(s) 198, 443
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 1 cut(s) 226
SsiI CCGC 3 cut(s) 481, 541, 544
SspMI CTAG 2 cut(s) 357, 589
TaaI ACNGT 1 cut(s) 553
TaiI ACGT 2 cut(s) 305, 443
TaqI TCGA 1 cut(s) 486
TasI AATT 1 cut(s) 226
TatI WGTACW 1 cut(s) 190
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseFI GTSAC 2 cut(s) 433, 445
TseI GCWGC 1 cut(s) 472
Tsp45I GTSAC 2 cut(s) 433, 445
TspDTI ATGAA 3 cut(s) 36, 219, 417
VpaK11BI GGWCC 1 cut(s) 478
XceI RCATGY 1 cut(s) 371
XspI CTAG 2 cut(s) 357, 589
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.