Rorug04G0109900

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000165
Physical Location & Seq
Forward (+)
17253527 .. 17256813
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0109900.1

Sequence Viewer

Length: 2541 bp
ATGGAAGGTACCCTCTTCCCAAGTAGACCAGTCCTTCCTATTCAAACCAGCAGACCAATACAACCAAGCCCTCCTGTGAAATTCAATGCAACCACTTTGCCACCCCTTCCCCAAACCCCATCTTCATTTCCTATTGACTCTCTTCTCCAGCACCTTCTCAACATCTCTTCACCTCCCAACACTCCCCACAACCTTAAACCCTTAAACCCACCACACCAAACCAATGCCATTTTCCCTTCTCTTCAAATTTCAGTGGATTCGACTCCGAAACAGCACCAATTGAAGAAACCCACCTCGGTTTTAGTCCACGACTTTGAGGACAAGGCCAAACCAGAAGATGGGCTTATCGACTTCTTGACAGTAAAGGGTAAGATGATGTTCAATTCCATTGTAGAGTCGCCTTTGCATTGTGTGAATGAATTATGTGATTCTGCTAAGTTTGAGTTGCTTGAAGTTGATTTGATTAGTCTGTTGAAGGCATTAGACCTTTCTGGCAATTGGGAAAGAGCCCTTTTGTTGTTTGAATGGATTATGCTGAACTTACATTCTGAAAGTTTGAAATTGGATAAGCAGATCATTGAACTAATGGTTAGAATTTTGGGTAGAGAGTCACAGCATACTATTGCATCCAAGCTGTTTGATGTAATTCCCATAGAGGAGTACTCGCTGGATGTTCGAGCTTATACCACTGTCATTCATGCATATTCTCGCACTGGCAAGTACGAACGAGCAATTGACTTGTTTGAGAAATTGATGGAGATGGGTCTGTCGCCAACTTTAGTTACTTACAATGTCATGCTTGATGTTTATGGGAAGAAGGGTCGATCTTGGAATAAAATTTTAGGCCTCTTGGATGAGATGAAGAGCAAAGGATTTGAATTTGATGATTTTACTTGTAGTACAGTGATATCTGCTTGTGGAAGAGAGGGTTTGTTGGATGAGGCAAAAGAGTTCTTTGCCGGATTGAAGTCACAAGGGTATGTACCAGGAACAGTTACCTATAATTCTTTGCTACAAGTTTTCGGCAAGGCGGGGGTGTTCATGGAGGCATTGAGCATATTGAAAGAAATGGAGGATAACAACTGCCCACCTGATGCTGTTACTTACAATGAGCTTGTGGCAGCTTATGTGAGGGCAGGATTCGCCGAGGAGGGTGCATCTGTGTTAAAAACAATGACCCAAAAAGGAACTATGCCAAACGCTGTTACATACACTACCGTGATAAATGCATATGGAAGAGCAGGAAAGGAGGAAGAAGCTCTAAGGTTGTTCAACCAAATGAAGGAGACTGGCTGTGTTCCTAATGTTTGTACCTACAATGCTGTCCTTGCAATGCTTGGAAAGAAGGCACGGCCAGAGGACATGATAAAAATACTTTGTGATATGAAGTCGAGTGGATGTGCCCCTAACCGGATTACATGGAATACAATGCTTGCCATGTGTGGTGATAAGGGCAAGCACAAGTATGTGAATCAGGTGCTTCGAGAAATGAAGAATTGTGGTTTTGAGCCTGACAGAGACACCTTCAATACCTTGATCAGTGCATATGGACGGTGTGGGTCAGATATAGATGCTGCACAGATGCACGATGAGATGATTAGAGCTGGATTTACCCCATGCATTACAACTTACAATGCACTTCTAAATGCTCTGGCTCGGCGAGGGGACTGGAAAGCAGCTGAATCTGTTATTCTAGACATGAAGAATAAGGGTTTTAAGCCTAATGAAACCTCATATTCATTGATGATCAACTGCCATGCAAAGGGAGGGAATGTGAGGGGGATAGAGAGAATTGAGAAAGAAATCTATGAGGGTCATATTTTTCCTAGCTGGATTCTTTTGAGAACACTTGTTCTTGCAAACTTCAAGTGTAGAGCACTAAGGGGTATGGAGAGGGCATTCCAGCAATTGCAGATTAAAGGATATAAACCTGATTTGGTCCTGTTCAATTCTATGCTTTCCATTTATGCTCGAAAGAACATGTATGACCGGGCTAATGACATGCTGCACATGATTCGTGAAAACGACCTTCAGCCAGATCTTGTAACCTACAATAGCTTGATGGACATGTATGCCAGAAAGGGAGAGTGTTGGAAAGCAGAAGAAATTCTCCTGTCCTTACAAAAATCTGGTGGGAAACCGGACCTTGTCTCTTATAACACTGTCATCAAAGGATTTTGCAGGCAAGGGCACATGCAAGAGGCTATAAGAATTCTCTCTGAGATGACAGCAAGAGGGATTCGACCGTGTATTTTTACCTACAATACTTTTGTCACTGGCTATTCAGGGCGAGGAATGTTCTCAGAAGTAGATGAAGTGATTAGCTATATGACTCAGAACAATTGCAAACCTAATGAGTTAACCTACAAGATTGTGGTGGATGGTTATTGTAAAGCAAGGAAGTTTGAAGAAGCTATGGACTTTCTGTCAAAGATTAAGGAGATTGATAATTCTTTTGATGATGAATATGTGGAAAGACTCTCTTCTCGCATTAGGGGCAATTGGGAAGCATTGGAGAACTTAAGTAGTCCAAGTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

846

Amino Acids

95.51

Weight (kDa)

6.48

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 220 - 272 5.2e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 224 - 270 5.1e-12 PPR repeat family
PPR PF01535 227 - 256 2.3e-06 PPR repeat
PPR_2 PF13041 258 - 307 2.7e-11 PPR repeat family
PPR_long PF17177 283 - 418 3.7e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 283 - 343 3.9e-09 Pentatricopeptide repeat domain
TPR_24 PF23276 298 - 375 2.4e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 329 - 376 3.7e-12 PPR repeat family
PPR PF01535 332 - 362 1.9e-06 PPR repeat
PPR_3 PF13812 352 - 412 1.2e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 364 - 411 1.8e-10 PPR repeat family
TPR_24 PF23276 379 - 466 4.4e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 387 - 448 1.4e-16 Pentatricopeptide repeat domain
PPR_1 PF12854 395 - 428 1e-09 PPR repeat
PPR_2 PF13041 399 - 443 2.2e-15 PPR repeat family
PPR PF01535 402 - 432 1.7e-09 PPR repeat
PPR_long PF17177 415 - 556 1.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 434 - 481 9e-12 PPR repeat family
PPR_2 PF13041 471 - 516 4.3e-10 PPR repeat family
PPR_2 PF13041 508 - 553 7.3e-07 PPR repeat family
PPR_3 PF13812 529 - 585 8.4e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 539 - 588 6.7e-14 PPR repeat family
PPR PF01535 543 - 572 7e-06 PPR repeat
TPR_24 PF23276 633 - 740 4.1e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 634 - 691 9.6e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 644 - 693 2.8e-09 PPR repeat family
PPR_3 PF13812 704 - 760 2.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 711 - 743 9.2e-12 PPR repeat
PPR_2 PF13041 714 - 749 1.1e-10 PPR repeat family
PPR PF01535 717 - 747 6e-08 PPR repeat
PPR_3 PF13812 737 - 793 2.1e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 749 - 798 8.4e-13 PPR repeat family
PPR_1 PF12854 781 - 811 5.1e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2157
Acc65I GGTACC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 338
AccI GTMKAC 1 cut(s) 25
AciI CCGC 1 cut(s) 1031
AcoI YGGCCR 1 cut(s) 1352
AcsI RAATTY 7 cut(s) 80, 246, 594, 837, 878, 2106, 2211
AcuI CTGAAG 1 cut(s) 2015
AfaI GTAC 6 cut(s) 10, 662, 722, 901, 984, 1312
AfiI CCNNNNNNNGG 4 cut(s) 338, 1282, 1410, 1762
AflII CTTAAG 1 cut(s) 2521
AflIII ACRYGT 2 cut(s) 1980, 2067
AhdI GACNNNNNGTC 1 cut(s) 2425
AjnI CCWGG 1 cut(s) 985
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AleI CACNNNNGTG 1 cut(s) 1217
Alw21I GWGCWC 1 cut(s) 1879
Alw26I GTCTC 3 cut(s) 1280, 1512, 2155
AoxI GGCC 3 cut(s) 324, 844, 1352
ApeKI GCWGC 4 cut(s) 1121, 1574, 1676, 2005
ApoI RAATTY 7 cut(s) 80, 246, 594, 837, 878, 2106, 2211
Asp700I GAANNNNTTC 1 cut(s) 2106
Asp718I GGTACC 1 cut(s) 8
AspS9I GGNCC 2 cut(s) 1939, 2143
AsuC2I CCSGG 1 cut(s) 1991
AsuHPI GGTGA 2 cut(s) 162, 1457
AvaII GGWCC 2 cut(s) 1939, 2143
BaeGI GKGCMC 2 cut(s) 1405, 2193
BanI GGYRCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 511
Bbv12I GWGCWC 1 cut(s) 1879
BbvI GCAGC 4 cut(s) 1133, 1561, 1688, 1992
BccI CCATC 6 cut(s) 127, 332, 748, 754, 2056, 2375
BceAI ACGGC 1 cut(s) 1367
BcgI CGANNNNNNTGC 4 cut(s) 1136, 1170, 1997, 2031
BciT130I CCWGG 1 cut(s) 987
BclI TGATCA 2 cut(s) 1536, 1746
BcnI CCSGG 1 cut(s) 1991
BcoDI GTCTC 3 cut(s) 1280, 1512, 2155
BfaI CTAG 2 cut(s) 1694, 1827
BfrI CTTAAG 1 cut(s) 2521
BglII AGATCT 1 cut(s) 2038
BisI GCNGC 4 cut(s) 1122, 1575, 1677, 2006
BlsI GCNGC 4 cut(s) 1123, 1576, 1678, 2007
BmcAI AGTACT 1 cut(s) 662
Bme1390I CCNGG 2 cut(s) 987, 1991
Bme18I GGWCC 2 cut(s) 1939, 2143
BmeRI GACNNNNNGTC 1 cut(s) 2425
BmgT120I GGNCC 2 cut(s) 1939, 2143
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 987, 1991
BmsI GCATC 5 cut(s) 635, 1084, 1166, 1561, 1572
BplI GAGNNNNNCTC 2 cut(s) 647, 679
BpmI CTGGAG 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 1991
BsaJI CCNNGG 2 cut(s) 294, 1146
BsaWI WCCGGW 2 cut(s) 1410, 2140
BsaXI ACNNNNNCTCC 2 cut(s) 1758, 1788
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 1282, 1410, 1762
Bse1I ACTGG 5 cut(s) 29, 718, 1294, 1673, 2281
Bse3DI GCAATG 1 cut(s) 1338
BseBI CCWGG 1 cut(s) 987
BseDI CCNNGG 2 cut(s) 294, 1146
BseGI GGATG 6 cut(s) 626, 676, 859, 943, 1403, 2386
BseLI CCNNNNNNNGG 4 cut(s) 338, 1282, 1410, 1762
BseMI GCAATG 1 cut(s) 1338
BseMII CTCAG 3 cut(s) 2211, 2316, 2348
BseNI ACTGG 5 cut(s) 29, 718, 1294, 1673, 2281
BseRI GAGGAG 2 cut(s) 671, 1163
BseSI GKGCMC 2 cut(s) 1405, 2193
BseXI GCAGC 4 cut(s) 1133, 1561, 1688, 1992
BsgI GTGCAG 2 cut(s) 1560, 1991
Bsh1285I CGRYCG 1 cut(s) 2246
BshFI GGCC 3 cut(s) 326, 846, 1354
BshNI GGYRCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 2246
BsiHKAI GWGCWC 1 cut(s) 1879
BsiSI CCGG 4 cut(s) 960, 1411, 1990, 2141
BslFI GGGAC 1 cut(s) 1679
BslI CCNNNNNNNGG 4 cut(s) 338, 1282, 1410, 1762
BsmAI GTCTC 3 cut(s) 1280, 1512, 2155
BsmFI GGGAC 1 cut(s) 1679
BsmI GAATGC 1 cut(s) 1898
BsnI GGCC 3 cut(s) 326, 846, 1354
Bsp1286I GDGCHC 4 cut(s) 511, 1405, 1879, 2193
Bsp143I GATC 5 cut(s) 573, 824, 1536, 1746, 2038
BspACI CCGC 1 cut(s) 1031
BspANI GGCC 3 cut(s) 326, 846, 1354
BspCNI CTCAG 3 cut(s) 2212, 2315, 2347
BspLI GGNNCC 1 cut(s) 10
BspQI GCTCTTC 2 cut(s) 857, 1231
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 2521
BsrDI GCAATG 1 cut(s) 1338
BsrI ACTGG 5 cut(s) 29, 718, 1294, 1673, 2281
BssECI CCNNGG 2 cut(s) 294, 1146
BssMI GATC 5 cut(s) 573, 824, 1536, 1746, 2038
Bst2UI CCWGG 1 cut(s) 987
Bst4CI ACNGT 8 cut(s) 361, 691, 904, 994, 1219, 1554, 2164, 2247
Bst6I CTCTTC 8 cut(s) 20, 147, 172, 246, 857, 916, 1231, 2488
BstAFI CTTAAG 1 cut(s) 2521
BstC8I GCNNGC 3 cut(s) 1434, 1457, 2183
BstDEI CTNAG 6 cut(s) 435, 1262, 1880, 2220, 2302, 2334
BstF5I GGATG 6 cut(s) 626, 676, 859, 943, 1403, 2386
BstKTI GATC 5 cut(s) 576, 827, 1539, 1749, 2041
BstMAI GTCTC 3 cut(s) 1280, 1512, 2155
BstMBI GATC 5 cut(s) 573, 824, 1536, 1746, 2038
BstMCI CGRYCG 1 cut(s) 2246
BstMWI GCNNNNNNNGC 3 cut(s) 1142, 1328, 2496
BstNI CCWGG 1 cut(s) 987
BstNSI RCATGY 4 cut(s) 1984, 2005, 2071, 2197
BstSCI CCNGG 2 cut(s) 985, 1989
BstSLI GKGCMC 2 cut(s) 1405, 2193
BstV1I GCAGC 4 cut(s) 1133, 1561, 1688, 1992
BstX2I RGATCY 1 cut(s) 2038
BstYI RGATCY 1 cut(s) 2038
BsuRI GGCC 3 cut(s) 326, 846, 1354
BtsCI GGATG 6 cut(s) 626, 676, 859, 943, 1403, 2386
BtsIMutI CAGTG 7 cut(s) 258, 687, 711, 909, 1546, 2160, 2274
Cac8I GCNNGC 3 cut(s) 1434, 1457, 2183
Cfr13I GGNCC 2 cut(s) 1939, 2143
Csp6I GTAC 6 cut(s) 9, 661, 721, 900, 983, 1311
CviQI GTAC 6 cut(s) 9, 661, 721, 900, 983, 1311
DdeI CTNAG 6 cut(s) 435, 1262, 1880, 2220, 2302, 2334
DpnI GATC 5 cut(s) 575, 826, 1538, 1748, 2040
DpnII GATC 5 cut(s) 573, 824, 1536, 1746, 2038
DriI GACNNNNNGTC 1 cut(s) 2425
EaeI YGGCCR 1 cut(s) 1352
Eam1104I CTCTTC 8 cut(s) 20, 147, 172, 246, 857, 916, 1231, 2488
Eam1105I GACNNNNNGTC 1 cut(s) 2425
EarI CTCTTC 8 cut(s) 20, 147, 172, 246, 857, 916, 1231, 2488
Eco147I AGGCCT 1 cut(s) 846
Eco24I GRGCYC 1 cut(s) 511
Eco32I GATATC 1 cut(s) 909
Eco47I GGWCC 2 cut(s) 1939, 2143
Eco57I CTGAAG 1 cut(s) 2015
EcoRI GAATTC 1 cut(s) 2211
EcoRII CCWGG 1 cut(s) 985
EcoRV GATATC 1 cut(s) 909
EcoT22I ATGCAT 3 cut(s) 703, 1231, 1622
EcoT38I GRGCYC 1 cut(s) 511
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 2467, 2499
FaqI GGGAC 1 cut(s) 1679
FauI CCCGC 1 cut(s) 1024
FauNDI CATATG 2 cut(s) 1231, 1546
FbaI TGATCA 2 cut(s) 1536, 1746
FblI GTMKAC 1 cut(s) 25
Fnu4HI GCNGC 4 cut(s) 1122, 1575, 1677, 2006
FokI GGATG 6 cut(s) 613, 683, 866, 950, 1410, 2393
FriOI GRGCYC 1 cut(s) 511
Fsp4HI GCNGC 4 cut(s) 1122, 1575, 1677, 2006
FspBI CTAG 2 cut(s) 1694, 1827
GluI GCNGC 4 cut(s) 1122, 1575, 1677, 2006
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 3 cut(s) 326, 846, 1354
HapII CCGG 4 cut(s) 960, 1411, 1990, 2141
HincII GTYRAC 1 cut(s) 2361
HindII GTYRAC 1 cut(s) 2361
HpaI GTTAAC 1 cut(s) 2361
HpaII CCGG 4 cut(s) 960, 1411, 1990, 2141
HphI GGTGA 2 cut(s) 162, 1457
Hpy166II GTNNAC 3 cut(s) 26, 307, 2361
Hpy188I TCNGA 6 cut(s) 267, 550, 1564, 2221, 2305, 2337
Hpy188III TCNNGA 4 cut(s) 355, 1484, 1694, 2018
Hpy8I GTNNAC 3 cut(s) 26, 307, 2361
HpyCH4III ACNGT 8 cut(s) 361, 691, 904, 994, 1219, 1554, 2164, 2247
HpyF10VI GCNNNNNNNGC 3 cut(s) 1142, 1328, 2496
HpyF3I CTNAG 6 cut(s) 435, 1262, 1880, 2220, 2302, 2334
KpnI GGTACC 1 cut(s) 12
Ksp22I TGATCA 2 cut(s) 1536, 1746
KspAI GTTAAC 1 cut(s) 2361
Kzo9I GATC 5 cut(s) 573, 824, 1536, 1746, 2038
LguI GCTCTTC 2 cut(s) 857, 1231
Lsp1109I GCAGC 4 cut(s) 1133, 1561, 1688, 1992
LweI GCATC 5 cut(s) 635, 1084, 1166, 1561, 1572
MaeI CTAG 2 cut(s) 1694, 1827
MaeIII GTNAC 9 cut(s) 609, 781, 969, 994, 1099, 1204, 2044, 2272, 2534
MalI GATC 5 cut(s) 575, 826, 1538, 1748, 2040
MboI GATC 5 cut(s) 573, 824, 1536, 1746, 2038
MfeI CAATTG 6 cut(s) 278, 496, 732, 1907, 2341, 2500
MflI RGATCY 1 cut(s) 2038
MhlI GDGCHC 4 cut(s) 511, 1405, 1879, 2193
MlyI GAGTC 6 cut(s) 131, 256, 404, 617, 2326, 2472
MmeI TCCRAC 2 cut(s) 915, 2072
Mph1103I ATGCAT 3 cut(s) 703, 1231, 1622
MroXI GAANNNNTTC 1 cut(s) 2106
MseI TTAA 8 cut(s) 195, 203, 1166, 1716, 1917, 2360, 2436, 2522
MslI CAYNNNNRTG 2 cut(s) 1217, 1464
MspA1I CMGCKG 1 cut(s) 1679
MspCI CTTAAG 1 cut(s) 2521
MspI CCGG 4 cut(s) 960, 1411, 1990, 2141
MspR9I CCNGG 2 cut(s) 987, 1991
MunI CAATTG 6 cut(s) 278, 496, 732, 1907, 2341, 2500
Mva1269I GAATGC 1 cut(s) 1898
MvaI CCWGG 1 cut(s) 987
MwoI GCNNNNNNNGC 3 cut(s) 1142, 1328, 2496
NciI CCSGG 1 cut(s) 1991
NdeI CATATG 2 cut(s) 1231, 1546
NdeII GATC 5 cut(s) 573, 824, 1536, 1746, 2038
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 2 cut(s) 1171, 1636
NmuCI GTSAC 3 cut(s) 609, 969, 2272
NsiI ATGCAT 3 cut(s) 703, 1231, 1622
NspI RCATGY 4 cut(s) 1984, 2005, 2071, 2197
OliI CACNNNNGTG 1 cut(s) 1217
PceI AGGCCT 1 cut(s) 846
PciI ACATGT 2 cut(s) 1980, 2067
PciSI GCTCTTC 2 cut(s) 857, 1231
PctI GAATGC 1 cut(s) 1898
PdmI GAANNNNTTC 1 cut(s) 2106
PfeI GAWTC 8 cut(s) 257, 428, 1140, 1471, 1682, 1834, 2014, 2239
PflFI GACNNNGTC 1 cut(s) 2147
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 4 cut(s) 1123, 1576, 1678, 2007
PleI GAGTC 6 cut(s) 131, 256, 403, 616, 2326, 2472
PpsI GAGTC 6 cut(s) 131, 256, 403, 616, 2326, 2472
PscI ACATGT 2 cut(s) 1980, 2067
PsiI TTATAA 1 cut(s) 2157
Psp6I CCWGG 1 cut(s) 985
PspGI CCWGG 1 cut(s) 985
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 2 cut(s) 1939, 2143
PsuI RGATCY 1 cut(s) 2038
PsyI GACNNNGTC 1 cut(s) 2147
PvuII CAGCTG 1 cut(s) 1679
RsaI GTAC 6 cut(s) 10, 662, 722, 901, 984, 1312
RsaNI GTAC 6 cut(s) 9, 661, 721, 900, 983, 1311
RseI CAYNNNNRTG 2 cut(s) 1217, 1464
SapI GCTCTTC 2 cut(s) 857, 1231
SaqAI TTAA 8 cut(s) 195, 203, 1166, 1716, 1917, 2360, 2436, 2522
SatI GCNGC 4 cut(s) 1122, 1575, 1677, 2006
Sau3AI GATC 5 cut(s) 573, 824, 1536, 1746, 2038
Sau96I GGNCC 2 cut(s) 1939, 2143
ScaI AGTACT 1 cut(s) 662
SchI GAGTC 6 cut(s) 131, 256, 404, 617, 2326, 2472
ScrFI CCNGG 2 cut(s) 987, 1991
SduI GDGCHC 4 cut(s) 511, 1405, 1879, 2193
SfaNI GCATC 5 cut(s) 635, 1084, 1166, 1561, 1572
SinI GGWCC 2 cut(s) 1939, 2143
SmiMI CAYNNNNRTG 2 cut(s) 1217, 1464
SmlI CTYRAG 1 cut(s) 2521
SmoI CTYRAG 1 cut(s) 2521
SseBI AGGCCT 1 cut(s) 846
SsiI CCGC 1 cut(s) 1031
SspMI CTAG 2 cut(s) 1694, 1827
StuI AGGCCT 1 cut(s) 846
StyD4I CCNGG 2 cut(s) 985, 1989
TaaI ACNGT 8 cut(s) 361, 691, 904, 994, 1219, 1554, 2164, 2247
TaqI TCGA 8 cut(s) 260, 348, 676, 823, 1391, 1483, 1972, 2242
TatI WGTACW 2 cut(s) 660, 899
TfiI GAWTC 8 cut(s) 257, 428, 1140, 1471, 1682, 1834, 2014, 2239
Tru1I TTAA 8 cut(s) 195, 203, 1166, 1716, 1917, 2360, 2436, 2522
Tru9I TTAA 8 cut(s) 195, 203, 1166, 1716, 1917, 2360, 2436, 2522
TscAI CASTG 7 cut(s) 258, 694, 718, 909, 1546, 2167, 2281
TseFI GTSAC 3 cut(s) 609, 969, 2272
TseI GCWGC 4 cut(s) 1121, 1574, 1676, 2005
Tsp45I GTSAC 3 cut(s) 609, 969, 2272
TspRI CASTG 7 cut(s) 258, 694, 718, 909, 1546, 2167, 2281
Tth111I GACNNNGTC 1 cut(s) 2147
Van91I CCANNNNNTGG 1 cut(s) 338
Vha464I CTTAAG 1 cut(s) 2521
VpaK11BI GGWCC 2 cut(s) 1939, 2143
XapI RAATTY 7 cut(s) 80, 246, 594, 837, 878, 2106, 2211
XbaI TCTAGA 1 cut(s) 1693
XceI RCATGY 4 cut(s) 1984, 2005, 2071, 2197
XmiI GTMKAC 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 2106
XspI CTAG 2 cut(s) 1694, 1827
ZrmI AGTACT 1 cut(s) 662
Zsp2I ATGCAT 3 cut(s) 703, 1231, 1622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.