Rw3G024980

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000165
Physical Location & Seq
Reverse (-)
32621094 .. 32621756
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024980.1

Sequence Viewer

Length: 663 bp
ATGTTAAGGAGTGCAGCCAAGGTTTATACTAACAAAATGTTTCAGCTTTTTGAAACAAAATTCTATGGCTATATGGGAGTTAGACTAAAAGAAGTTTCTAGCCTGGATGCAGTTTATATATATCAAGCAATTGAAGATGGTCGTCAAAGTGTGCACAAGATTGAATATAACTCTACATCCTTGAACATATATTGTTCTTGTAAGTCATTTGAGTTGCTTGGAATCTTGTGTGGTCATGCTTTGAAGGTGTTTGATAAGAATAATATCACTATTTTACCCACTCAGTATATATTGAAAATGTGGATTAAAGAAGTAAAGAAAGGGATTGTGGTCAGCAATAATACATGTGGAGGAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCGCCTTAGTGAATTGATGCATGAAGGAAATAGTATGAATGACATAGCCTCACTGCCTGGTTCAGATACTAAAATTGACAAGGACCTGTTAAAAGAGGTAATGAAGAGTCTTGAAAAAGATAAGGACACTATGTATGTGTTGGAAAATTTGAAGAAACTTGGTGCCCAATCTGACTCTAGCATTTCTGGTAATGAGACACTAGTTTTGAATCCACCTAGTGCAAAGACTAAAGGAATGAAAAATGCAAGAATCAAAGATGTGAGGGAGATAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

220

Amino Acids

24.69

Weight (kDa)

9.1

Isoelectric Point (pI)

39.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 62 - 84 2.1e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 548
AcsI RAATTY 3 cut(s) 59, 364, 532
AdeI CACNNNGTG 1 cut(s) 605
AflIII ACRYGT 1 cut(s) 344
AhlI ACTAGT 1 cut(s) 586
AjnI CCWGG 2 cut(s) 102, 442
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 575
Alw44I GTGCAC 1 cut(s) 152
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 3 cut(s) 59, 364, 532
ArsI GACNNNNNNTTYG 2 cut(s) 574, 606
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 469
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 2 cut(s) 156, 553
BanI GGYRCC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 104, 444
BcoDI GTCTC 1 cut(s) 575
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 5 cut(s) 99, 378, 564, 587, 603
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 104, 444
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 469
BmiI GGNNCC 1 cut(s) 550
BmrFI CCNGG 2 cut(s) 104, 444
BmsI GCATC 2 cut(s) 97, 393
BsaJI CCNNGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 104, 444
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 112, 176
BseMII CTCAG 1 cut(s) 296
BseSI GKGCMC 2 cut(s) 156, 553
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 548
BsiHKAI GWGCWC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 575
Bsp1286I GDGCHC 2 cut(s) 156, 553
BspCNI CTCAG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 550
BspT107I GGYRCC 1 cut(s) 548
BssECI CCNNGG 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 104, 444
Bst6I CTCTTC 1 cut(s) 485
BstDEI CTNAG 2 cut(s) 282, 392
BstF5I GGATG 2 cut(s) 112, 176
BstHHI GCGC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 575
BstNI CCWGG 2 cut(s) 104, 444
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 102, 442
BstSLI GKGCMC 2 cut(s) 156, 553
BstV1I GCAGC 1 cut(s) 26
BtsCI GGATG 2 cut(s) 112, 176
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 437
CfoI GCGC 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 469
CviAII CATG 3 cut(s) 236, 345, 407
CviJI RGCY 5 cut(s) 17, 46, 69, 102, 434
CviKI_1 RGCY 5 cut(s) 17, 46, 69, 102, 434
DdeI CTNAG 2 cut(s) 282, 392
DraIII CACNNNGTG 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 469
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 364
EcoRII CCWGG 2 cut(s) 102, 442
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 3 cut(s) 239, 348, 410
FatI CATG 3 cut(s) 235, 344, 406
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 119, 163
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 5 cut(s) 99, 378, 564, 587, 603
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 390
Hin1II CATG 3 cut(s) 239, 348, 410
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 5 cut(s) 222, 493, 560, 595, 636
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 451, 559
Hpy188III TCNNGA 1 cut(s) 497
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 2 cut(s) 238, 404
HpyCH4V TGCA 6 cut(s) 14, 110, 154, 406, 608, 632
HpyF3I CTNAG 2 cut(s) 282, 392
Hsp92II CATG 3 cut(s) 239, 348, 410
HspAI GCGC 1 cut(s) 388
LpnPI CCDG 6 cut(s) 89, 116, 429, 456, 485, 558
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 2 cut(s) 97, 393
MaeI CTAG 5 cut(s) 99, 378, 564, 587, 603
MboII GAAGA 3 cut(s) 146, 502, 550
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 156, 553
MluCI AATT 6 cut(s) 59, 129, 364, 398, 459, 532
MlyI GAGTC 2 cut(s) 502, 554
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 4 cut(s) 344, 445, 475, 642
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 3 cut(s) 5, 306, 476
MspR9I CCNGG 2 cut(s) 104, 444
MunI CAATTG 1 cut(s) 129
MvaI CCWGG 2 cut(s) 104, 444
NlaIII CATG 3 cut(s) 239, 348, 410
NlaIV GGNNCC 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 348
PciI ACATGT 1 cut(s) 344
PfeI GAWTC 3 cut(s) 222, 595, 636
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 501, 554
PpsI GAGTC 2 cut(s) 501, 554
PpuMI RGGWCCY 1 cut(s) 469
PscI ACATGT 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 102, 442
PspGI CCWGG 2 cut(s) 102, 442
PspN4I GGNNCC 1 cut(s) 550
PspPI GGNCC 1 cut(s) 469
PspPPI RGGWCCY 1 cut(s) 469
SaqAI TTAA 3 cut(s) 5, 306, 476
SatI GCNGC 1 cut(s) 15
Sau96I GGNCC 1 cut(s) 469
SchI GAGTC 2 cut(s) 502, 554
ScrFI CCNGG 2 cut(s) 104, 444
SduI GDGCHC 2 cut(s) 156, 553
SetI ASST 6 cut(s) 24, 48, 249, 474, 486, 604
SfaNI GCATC 2 cut(s) 97, 393
SinI GGWCC 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 6 cut(s) 59, 129, 364, 398, 459, 532
SspMI CTAG 5 cut(s) 99, 378, 564, 587, 603
StyD4I CCNGG 2 cut(s) 102, 442
StyI CCWWGG 1 cut(s) 18
TasI AATT 6 cut(s) 59, 129, 364, 398, 459, 532
TfiI GAWTC 3 cut(s) 222, 595, 636
Tru1I TTAA 3 cut(s) 5, 306, 476
Tru9I TTAA 3 cut(s) 5, 306, 476
TscAI CASTG 1 cut(s) 444
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 4 cut(s) 423, 437, 503, 638
TspRI CASTG 1 cut(s) 444
VneI GTGCAC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 3 cut(s) 59, 364, 532
XceI RCATGY 1 cut(s) 348
XspI CTAG 5 cut(s) 99, 378, 564, 587, 603
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.