pycom17g05620

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000165
Physical Location & Seq
Forward (+)
4007045 .. 4009183
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g05620.1

Sequence Viewer

Length: 2139 bp
ATGCAAGAGGGCATTGAAATTGAACAGTATATCATCATGGAGGCAGAGCCTTCCGGTGAATGCGGAGGTAAGGTAGTGGACTCGAATGTGACATTGGAAGGCGAAAGCTATGGACATTGTGTCGTAGAGGATGTCGAAGCTCCGGTGGTGTTGGATGATGGCAAAGAGGGTGATGTGGAGATTGACTTGTCTCGGTTAGTAGGAGGTGGGATTATAGAGCCCACATTGGGTATGGAGTTTACCTCCGAAGACGATGCTAGGAATTTTTACAATGCGTATGCTAAACAAACGGGGTTTAGCATTCGCGTGAACTCATATTACCGCTCGAAGAAGGATAATTCGATTATATCTAGGGAGTTTTGTTGTTCTAAAGAAGGGTTCCGCCGGGAGAAAAATGCAAAGAGAGATTCGGGCGAGGATGTGAAGAGAAGGCGTGCTAGGGCAATCACTAGGGAAGGTTGCAAGGCTCTGATGACTGTTAGGAAGCGCGAAAATGGGAGATGGTATGTGGTGAAGCTAGAGAAGGACCATAATCATGAGCTGGTCACTCCTGCTATGCGGCATTTTCTTAGGTCGCATAAGCAGGATTTTGATCCTGACAAAAGTTGTAGCAACTCTTTCAGTTCTCCGGGATTGTCTTTGGATGCTTCCGCAGATGTCTTGGCTGATTCTGGCAGTTTTGGAAAGATGGCATTTGCTGTGCAGAGTGATGTCAATTATATTGGAAGAGGCCGGTTGAGCACTTTTGGCATCGATGCCCAAAGTTTGCTTGGGTTTTTTAAGGTTATGCAAGCGAGTGATCCAGCATTTTATTATGCAATACAGGTTGACGAAGAAGAGAGGCTGAGTAGCGTCTTTTGGGTTGACACAAGATCAAGAATCGCTTACAACTGTTTCTCCGATGTTGTAGCCTTTGATACTACTTATCAAGTGAACCGGTACAAAATGCCATTTGCGCCAATCACTGGAGTAAATCATCACAAACATTCAGTTCTGTTCGGTTGTGCATTGCTTGCAGATGAGTCTGAATCTACCTTCATTTGGCTCTTCACAACTTGGCTTGAGGCAATGTCGGGACGGCAGCCAGGTCTAATTATAACCGATTATGACCCAACTATAAGTCGAGCAGTGCAACAAGTTTTTCCTCAATCAATTCATCGATTTTGCAAGTGGCATATCATAAGCAAAATGCCGAAGGAAATGGGAAATGTATATAGTGTAACCCCAAGGACTTTTCAAGTTGAATTTGATAGATGCATTAACAAGAGCGAGACACCTGATGAGTTTGAATCAGCTTGGCAGATGCTTCTTGATAAGTACAGTCTTAGAGAGAGTCATCGGCTTCAATCGCTTTATATTGATCGCAAATTGTGGGTTCCGGTATACATAAGAGACACATTCTTTGCCGGGCTGTATGCTGCCCAGCGGAGTGGGAGTGTGAACTCACTTTTTGATGGCTATGTGAATGCTGGAACTACCTTACAAGATTTTGCAGCGCAATATGAGAAGGCTTTAGATGAGAGATATGAGAAAGAAGCAAAGGCGGAGTTCGAAACTTTTCATACTAAACCGGTTCTAAAAACACCACTTCCTGTGGAAAAGCAAGGAGCAGACATCTACACAAGAAGCATGTTCACCATATTTCAGGATGAAGTTTTCGAATCCCTCGTGTTTGCTGTGAAATTAAGTGCAGAGGACGGAGGAACAAGAACTTATGAGATAGCAAGATTCAACGAAGAACATAAAATTTATTTCGTAGCTTTTAACATAGCTGAACAACTAGCTAGTTGCAGTTGCAAGATGTTTGAATTTGAAGGGATCCTCTGCAGACATGTGCTTGCAGTGTTTAAAGCCACAAATGTCTTTACACTCCCACCGTGTTATATCTTAAAGAGATGGACCCGAAATGCGAAGGAAGAGGCTATGTTGGATGTCCTTCCATGTGTCGAATTACAGGGAAATTCTCAAAAGGGCAGGAACTTGCAATACAATCTTCTGTACCAGGAAGCCATTAAATGTGCAGAGGAAGGGATGGCATCTGACCAAGTCTTTAAGGTGGCACTCAACGCATTAAGAGAGGCTAGGGTAAAAATTGTCAGTGCCAAGCAAAACGCCATGAAATCCATGCCTCAAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

713

Amino Acids

81.08

Weight (kDa)

5.77

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 88 - 182 3.8e-30 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 271 - 383 2.7e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 302 - 395 1.1e-29 MULE transposase domain
SWIM PF04434 595 - 619 2.1e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1097
AccB7I CCANNNNNTGG 1 cut(s) 965
AccBSI CCGCTC 1 cut(s) 324
AccI GTMKAC 1 cut(s) 1383
AccII CGCG 2 cut(s) 306, 489
AciI CCGC 7 cut(s) 63, 322, 382, 559, 651, 1426, 1544
AclWI GGATC 4 cut(s) 587, 794, 1813, 1826
AcsI RAATTY 5 cut(s) 262, 1244, 1746, 1808, 1960
AfaI GTAC 3 cut(s) 941, 1319, 2000
AfiI CCNNNNNNNGG 3 cut(s) 227, 965, 1041
AflIII ACRYGT 1 cut(s) 1831
AgeI ACCGGT 2 cut(s) 936, 1570
AgsI TTSAA 9 cut(s) 17, 23, 1238, 1244, 1289, 1346, 1732, 1808, 1814
AhdI GACNNNNNGTC 1 cut(s) 119
AjnI CCWGG 2 cut(s) 1084, 2001
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
AluBI AGCT 8 cut(s) 108, 140, 517, 541, 1295, 1760, 1772, 1784
AluI AGCT 8 cut(s) 108, 140, 517, 541, 1295, 1760, 1772, 1784
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 3 cut(s) 195, 1265, 1386
AlwI GGATC 4 cut(s) 587, 794, 1813, 1826
AoxI GGCC 1 cut(s) 730
ApeKI GCWGC 3 cut(s) 1081, 1418, 1493
ApoI RAATTY 5 cut(s) 262, 1244, 1746, 1808, 1960
ArsI GACNNNNNNTTYG 2 cut(s) 1385, 1417
AsiGI ACCGGT 2 cut(s) 936, 1570
Asp700I GAANNNNTTC 1 cut(s) 1557
AspLEI GCGC 3 cut(s) 489, 958, 1498
AspS9I GGNCC 2 cut(s) 526, 1899
AsuC2I CCSGG 3 cut(s) 386, 630, 1408
AsuHPI GGTGA 4 cut(s) 68, 182, 523, 1627
AsuII TTCGAA 2 cut(s) 1551, 1659
AvaII GGWCC 2 cut(s) 526, 1899
BamHI GGATCC 1 cut(s) 1818
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 1667
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 743
BbvI GCAGC 3 cut(s) 1093, 1405, 1505
BccI CCATC 6 cut(s) 152, 495, 682, 1448, 1890, 2026
BceAI ACGGC 1 cut(s) 1094
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BciT130I CCWGG 2 cut(s) 1086, 2003
BcnI CCSGG 3 cut(s) 386, 630, 1408
BcoDI GTCTC 3 cut(s) 195, 1265, 1386
BfaI CTAG 9 cut(s) 258, 351, 438, 450, 518, 1781, 1785, 2082, 2137
BfmI CTRYAG 1 cut(s) 1825
BisI GCNGC 4 cut(s) 560, 1082, 1419, 1494
BlsI GCNGC 4 cut(s) 561, 1083, 1420, 1495
Bme1390I CCNGG 5 cut(s) 386, 630, 1086, 1408, 2003
Bme18I GGWCC 2 cut(s) 526, 1899
BmeRI GACNNNNNGTC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 526, 1899
BmiI GGNNCC 4 cut(s) 380, 1377, 1820, 1901
BmrFI CCNGG 5 cut(s) 386, 630, 1086, 1408, 2003
BmsI GCATC 7 cut(s) 244, 634, 745, 759, 1244, 1293, 2045
BpiI GAAGAC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 987
Bpu14I TTCGAA 2 cut(s) 1551, 1659
BpuEI CTTGAG 1 cut(s) 1082
BpuMI CCSGG 3 cut(s) 386, 630, 1408
Bsa29I ATCGAT 2 cut(s) 753, 1159
BsaBI GATNNNNATC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 1226
BsaWI WCCGGW 5 cut(s) 53, 142, 936, 1378, 1570
BsaXI ACNNNNNCTCC 6 cut(s) 57, 87, 881, 911, 1420, 1450
Bsc4I CCNNNNNNNGG 3 cut(s) 227, 965, 1041
Bse118I RCCGGY 3 cut(s) 732, 936, 1570
Bse1I ACTGG 1 cut(s) 970
Bse3DI GCAATG 2 cut(s) 1007, 1074
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 2 cut(s) 1086, 2003
BseCI ATCGAT 2 cut(s) 753, 1159
BseDI CCNNGG 1 cut(s) 1226
BseGI GGATG 7 cut(s) 136, 160, 424, 649, 1654, 1936, 2037
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 3 cut(s) 227, 965, 1041
BseMI GCAATG 2 cut(s) 1007, 1074
BseMII CTCAG 1 cut(s) 836
BseNI ACTGG 1 cut(s) 970
BseXI GCAGC 3 cut(s) 1093, 1405, 1505
BseYI CCCAGC 1 cut(s) 1422
BsgI GTGCAG 3 cut(s) 722, 1710, 2040
Bsh1236I CGCG 2 cut(s) 306, 489
BshFI GGCC 1 cut(s) 732
BshTI ACCGGT 2 cut(s) 936, 1570
BshVI ATCGAT 2 cut(s) 753, 1159
BsiHKAI GWGCWC 1 cut(s) 743
BsiSI CCGG 9 cut(s) 54, 143, 385, 629, 733, 937, 1379, 1407, 1571
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 3 cut(s) 227, 965, 1041
BsmAI GTCTC 3 cut(s) 195, 1265, 1386
BsmFI GGGAC 1 cut(s) 1089
BsmI GAATGC 3 cut(s) 65, 300, 1471
BsnI GGCC 1 cut(s) 732
Bsp119I TTCGAA 2 cut(s) 1551, 1659
Bsp1286I GDGCHC 2 cut(s) 222, 743
Bsp143I GATC 5 cut(s) 592, 799, 872, 1360, 1818
BspACI CCGC 7 cut(s) 63, 322, 382, 559, 651, 1426, 1544
BspANI GGCC 1 cut(s) 732
BspCNI CTCAG 1 cut(s) 837
BspDI ATCGAT 2 cut(s) 753, 1159
BspFNI CGCG 2 cut(s) 306, 489
BspHI TCATGA 1 cut(s) 535
BspLI GGNNCC 4 cut(s) 380, 1377, 1820, 1901
BspMAI CTGCAG 1 cut(s) 1829
BspPI GGATC 4 cut(s) 587, 794, 1813, 1826
BspQI GCTCTTC 1 cut(s) 1052
BspT104I TTCGAA 2 cut(s) 1551, 1659
BsrBI CCGCTC 1 cut(s) 324
BsrDI GCAATG 2 cut(s) 1007, 1074
BsrFI RCCGGY 3 cut(s) 732, 936, 1570
BsrI ACTGG 1 cut(s) 970
BssAI RCCGGY 3 cut(s) 732, 936, 1570
BssECI CCNNGG 1 cut(s) 1226
BssMI GATC 5 cut(s) 592, 799, 872, 1360, 1818
BssNAI GTATAC 1 cut(s) 1384
BssSI CACGAG 1 cut(s) 1667
BssT1I CCWWGG 1 cut(s) 1226
Bst1107I GTATAC 1 cut(s) 1384
Bst2BI CACGAG 1 cut(s) 1667
Bst2UI CCWGG 2 cut(s) 1086, 2003
Bst4CI ACNGT 5 cut(s) 27, 478, 893, 1322, 1878
Bst6I CTCTTC 5 cut(s) 419, 721, 831, 1052, 1911
BstAPI GCANNNNNTGC 1 cut(s) 1013
BstBI TTCGAA 2 cut(s) 1551, 1659
BstC8I GCNNGC 4 cut(s) 435, 792, 1014, 1839
BstDEI CTNAG 3 cut(s) 569, 845, 1325
BstF5I GGATG 7 cut(s) 136, 160, 424, 649, 1654, 1936, 2037
BstFNI CGCG 2 cut(s) 306, 489
BstHHI GCGC 3 cut(s) 489, 958, 1498
BstKTI GATC 5 cut(s) 595, 802, 875, 1363, 1821
BstMAI GTCTC 3 cut(s) 195, 1265, 1386
BstMBI GATC 5 cut(s) 592, 799, 872, 1360, 1818
BstMWI GCNNNNNNNGC 6 cut(s) 738, 747, 955, 1013, 1348, 2066
BstNI CCWGG 2 cut(s) 1086, 2003
BstNSI RCATGY 2 cut(s) 1633, 1835
BstSCI CCNGG 5 cut(s) 384, 628, 1084, 1406, 2001
BstSFI CTRYAG 1 cut(s) 1825
BstUI CGCG 2 cut(s) 306, 489
BstV1I GCAGC 3 cut(s) 1093, 1405, 1505
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 1818
BstXI CCANNNNNNTGG 1 cut(s) 1430
BstYI RGATCY 1 cut(s) 1818
BstZ17I GTATAC 1 cut(s) 1384
Bsu15I ATCGAT 2 cut(s) 753, 1159
BsuRI GGCC 1 cut(s) 732
BsuTUI ATCGAT 2 cut(s) 753, 1159
BtsCI GGATG 7 cut(s) 136, 160, 424, 649, 1654, 1936, 2037
BtsI GCAGTG 2 cut(s) 1134, 1848
BtsIMutI CAGTG 4 cut(s) 963, 1134, 1848, 2104
Cac8I GCNNGC 4 cut(s) 435, 792, 1014, 1839
CciI TCATGA 1 cut(s) 535
CfoI GCGC 3 cut(s) 489, 958, 1498
Cfr10I RCCGGY 3 cut(s) 732, 936, 1570
Cfr13I GGNCC 2 cut(s) 526, 1899
ClaI ATCGAT 2 cut(s) 753, 1159
CseI GACGC 1 cut(s) 841
Csp6I GTAC 3 cut(s) 940, 1318, 1999
CspAI ACCGGT 2 cut(s) 936, 1570
CviAII CATG 7 cut(s) 37, 536, 1630, 1832, 1941, 2116, 2125
CviQI GTAC 3 cut(s) 940, 1318, 1999
DdeI CTNAG 3 cut(s) 569, 845, 1325
DpnI GATC 5 cut(s) 594, 801, 874, 1362, 1820
DpnII GATC 5 cut(s) 592, 799, 872, 1360, 1818
DraI TTTAAA 1 cut(s) 1849
DriI GACNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 5 cut(s) 419, 721, 831, 1052, 1911
Eam1105I GACNNNNNGTC 1 cut(s) 119
EarI CTCTTC 5 cut(s) 419, 721, 831, 1052, 1911
EciI GGCGGA 2 cut(s) 371, 1559
Eco130I CCWWGG 1 cut(s) 1226
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 526, 1899
EcoRII CCWGG 2 cut(s) 1084, 2001
EcoT14I CCWWGG 1 cut(s) 1226
EcoT22I ATGCAT 1 cut(s) 1259
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 1226
FaeI CATG 7 cut(s) 40, 539, 1633, 1835, 1944, 2119, 2128
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 1 cut(s) 1089
FatI CATG 7 cut(s) 36, 535, 1629, 1831, 1940, 2115, 2124
FblI GTMKAC 1 cut(s) 1383
Fnu4HI GCNGC 4 cut(s) 560, 1082, 1419, 1494
FokI GGATG 7 cut(s) 143, 167, 431, 656, 1661, 1943, 2044
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 560, 1082, 1419, 1494
FspBI CTAG 9 cut(s) 258, 351, 438, 450, 518, 1781, 1785, 2082, 2137
GlaI GCGC 3 cut(s) 488, 957, 1497
GluI GCNGC 4 cut(s) 560, 1082, 1419, 1494
GsaI CCCAGC 1 cut(s) 1426
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 1 cut(s) 732
HapII CCGG 9 cut(s) 54, 143, 385, 629, 733, 937, 1379, 1407, 1571
HgaI GACGC 1 cut(s) 841
HhaI GCGC 3 cut(s) 489, 958, 1498
Hin1II CATG 7 cut(s) 40, 539, 1633, 1835, 1944, 2119, 2128
Hin6I GCGC 3 cut(s) 487, 956, 1496
HinP1I GCGC 3 cut(s) 487, 956, 1496
HincII GTYRAC 2 cut(s) 829, 865
HindII GTYRAC 2 cut(s) 829, 865
HpaII CCGG 9 cut(s) 54, 143, 385, 629, 733, 937, 1379, 1407, 1571
HphI GGTGA 4 cut(s) 68, 182, 523, 1627
Hpy166II GTNNAC 9 cut(s) 79, 240, 310, 829, 865, 934, 1384, 1441, 1635
Hpy188I TCNGA 5 cut(s) 247, 471, 901, 1027, 2041
Hpy188III TCNNGA 6 cut(s) 536, 596, 876, 1074, 1310, 1646
Hpy8I GTNNAC 9 cut(s) 79, 240, 310, 829, 865, 934, 1384, 1441, 1635
HpyCH4III ACNGT 5 cut(s) 27, 478, 893, 1322, 1878
HpyF10VI GCNNNNNNNGC 6 cut(s) 738, 747, 955, 1013, 1348, 2066
HpyF3I CTNAG 3 cut(s) 569, 845, 1325
Hsp92II CATG 7 cut(s) 40, 539, 1633, 1835, 1944, 2119, 2128
HspAI GCGC 3 cut(s) 487, 956, 1496
Kzo9I GATC 5 cut(s) 592, 799, 872, 1360, 1818
LguI GCTCTTC 1 cut(s) 1052
LmnI GCTCC 2 cut(s) 145, 1607
Lsp1109I GCAGC 3 cut(s) 1093, 1405, 1505
LweI GCATC 7 cut(s) 244, 634, 745, 759, 1244, 1293, 2045
MaeI CTAG 9 cut(s) 258, 351, 438, 450, 518, 1781, 1785, 2082, 2137
MaeIII GTNAC 3 cut(s) 88, 544, 1219
MalI GATC 5 cut(s) 594, 801, 874, 1362, 1820
MbiI CCGCTC 1 cut(s) 324
MboI GATC 5 cut(s) 592, 799, 872, 1360, 1818
MflI RGATCY 1 cut(s) 1818
MhlI GDGCHC 2 cut(s) 222, 743
MlyI GAGTC 3 cut(s) 74, 1031, 1342
MmeI TCCRAC 2 cut(s) 132, 1908
Mph1103I ATGCAT 1 cut(s) 1259
MroXI GAANNNNTTC 1 cut(s) 1557
MseI TTAA 9 cut(s) 780, 1260, 1685, 1764, 1848, 1889, 2013, 2052, 2072
MslI CAYNNNNRTG 2 cut(s) 305, 534
MspA1I CMGCKG 1 cut(s) 1426
MspI CCGG 9 cut(s) 54, 143, 385, 629, 733, 937, 1379, 1407, 1571
MspR9I CCNGG 5 cut(s) 386, 630, 1086, 1408, 2003
Mva1269I GAATGC 3 cut(s) 65, 300, 1471
MvaI CCWGG 2 cut(s) 1086, 2003
MvnI CGCG 2 cut(s) 306, 489
MwoI GCNNNNNNNGC 6 cut(s) 738, 747, 955, 1013, 1348, 2066
NciI CCSGG 3 cut(s) 386, 630, 1408
NdeII GATC 5 cut(s) 592, 799, 872, 1360, 1818
NlaIII CATG 7 cut(s) 40, 539, 1633, 1835, 1944, 2119, 2128
NlaIV GGNNCC 4 cut(s) 380, 1377, 1820, 1901
NmuCI GTSAC 2 cut(s) 88, 544
NsiI ATGCAT 1 cut(s) 1259
NspI RCATGY 2 cut(s) 1633, 1835
NspV TTCGAA 2 cut(s) 1551, 1659
PagI TCATGA 1 cut(s) 535
PciI ACATGT 1 cut(s) 1831
PciSI GCTCTTC 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 1665
PctI GAATGC 3 cut(s) 65, 300, 1471
PdmI GAANNNNTTC 1 cut(s) 1557
PfeI GAWTC 7 cut(s) 407, 668, 879, 1028, 1289, 1661, 1728
PflFI GACNNNGTC 1 cut(s) 2045
PflMI CCANNNNNTGG 1 cut(s) 965
PfoI TCCNGGA 1 cut(s) 628
PinAI ACCGGT 2 cut(s) 936, 1570
PkrI GCNGC 4 cut(s) 561, 1083, 1420, 1495
PleI GAGTC 3 cut(s) 74, 1030, 1341
PpsI GAGTC 3 cut(s) 74, 1030, 1341
PscI ACATGT 1 cut(s) 1831
PsiI TTATAA 1 cut(s) 1097
Psp6I CCWGG 2 cut(s) 1084, 2001
PspFI CCCAGC 1 cut(s) 1422
PspGI CCWGG 2 cut(s) 1084, 2001
PspN4I GGNNCC 4 cut(s) 380, 1377, 1820, 1901
PspPI GGNCC 2 cut(s) 526, 1899
PsrI GAACNNNNNNTAC 4 cut(s) 302, 334, 1970, 2002
PstI CTGCAG 1 cut(s) 1829
PsuI RGATCY 1 cut(s) 1818
PsyI GACNNNGTC 1 cut(s) 2045
RsaI GTAC 3 cut(s) 941, 1319, 2000
RsaNI GTAC 3 cut(s) 940, 1318, 1999
RseI CAYNNNNRTG 2 cut(s) 305, 534
SapI GCTCTTC 1 cut(s) 1052
SaqAI TTAA 9 cut(s) 780, 1260, 1685, 1764, 1848, 1889, 2013, 2052, 2072
SatI GCNGC 4 cut(s) 560, 1082, 1419, 1494
Sau3AI GATC 5 cut(s) 592, 799, 872, 1360, 1818
Sau96I GGNCC 2 cut(s) 526, 1899
SchI GAGTC 3 cut(s) 74, 1031, 1342
ScrFI CCNGG 5 cut(s) 386, 630, 1086, 1408, 2003
SduI GDGCHC 2 cut(s) 222, 743
SfaNI GCATC 7 cut(s) 244, 634, 745, 759, 1244, 1293, 2045
SfcI CTRYAG 1 cut(s) 1825
SfuI TTCGAA 2 cut(s) 1551, 1659
SinI GGWCC 2 cut(s) 526, 1899
SmiMI CAYNNNNRTG 2 cut(s) 305, 534
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
SsiI CCGC 7 cut(s) 63, 322, 382, 559, 651, 1426, 1544
SspMI CTAG 9 cut(s) 258, 351, 438, 450, 518, 1781, 1785, 2082, 2137
StyD4I CCNGG 5 cut(s) 384, 628, 1084, 1406, 2001
StyI CCWWGG 1 cut(s) 1226
TaaI ACNGT 5 cut(s) 27, 478, 893, 1322, 1878
TatI WGTACW 1 cut(s) 1317
TauI GCSGC 1 cut(s) 562
TfiI GAWTC 7 cut(s) 407, 668, 879, 1028, 1289, 1661, 1728
Tru1I TTAA 9 cut(s) 780, 1260, 1685, 1764, 1848, 1889, 2013, 2052, 2072
Tru9I TTAA 9 cut(s) 780, 1260, 1685, 1764, 1848, 1889, 2013, 2052, 2072
TscAI CASTG 4 cut(s) 970, 1134, 1848, 2104
TseFI GTSAC 2 cut(s) 88, 544
TseI GCWGC 3 cut(s) 1081, 1418, 1493
Tsp45I GTSAC 2 cut(s) 88, 544
TspDTI ATGAA 5 cut(s) 1027, 1145, 1550, 1665, 2132
TspGWI ACGGA 1 cut(s) 1713
TspRI CASTG 4 cut(s) 970, 1134, 1848, 2104
Tth111I GACNNNGTC 1 cut(s) 2045
Van91I CCANNNNNTGG 1 cut(s) 965
VpaK11BI GGWCC 2 cut(s) 526, 1899
XapI RAATTY 5 cut(s) 262, 1244, 1746, 1808, 1960
XceI RCATGY 2 cut(s) 1633, 1835
XcmI CCANNNNNNNNNTGG 2 cut(s) 229, 767
XmiI GTMKAC 1 cut(s) 1383
XmnI GAANNNNTTC 1 cut(s) 1557
XspI CTAG 9 cut(s) 258, 351, 438, 450, 518, 1781, 1785, 2082, 2137
Zsp2I ATGCAT 1 cut(s) 1259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.