Rroxscaffold_7G00212120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000165
Physical Location & Seq
Reverse (-)
62569150 .. 62571980
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00212120.1

Sequence Viewer

Length: 618 bp
ATGCTGCAAACAGATCCGACTACCTGCAAACGGTCGCAACTAGATCTAAAGTTGCGACCAAACTTGGCCTCGCTTCAATCTCGTCCGCCGCATCACGGATCGCCGAATGGTGGCGTCAAATCTCACCACCGGAAAGGACCATCAAGTAGCTGCTCCACAACCACCATCGTCTCCAATTTGAGAGGGCGAGAGAATGGGATCTGTCTGTCTAGCCCAAGGTTGAAGATCCAACCATCTTTCCCATACCGCGCCTCATCTCGGACACCCCACCGCTACTCATCAACGCATCCCCTCCCGGGCCGGAACACGATGGCGAGGCGCCGTAACGTTCGGCGGGGAGAGAATAAACCTTTGAGACTTTTTGCCTGTTCTCTAGGTCCCGCGAGAATAAGGACTCAAATGGTGTTTGAGTCTTCTCGCCATGATGAGCTTGCTAAGTGCTATGCAAATACTACAAGATCGTATGAGCTGAGCACCCTCTTTTTGTTATTAATTAGGAGCGTAGGAATTCAGATGGATCTGATATATGAAAGACACCAAGTCAAGAAGATGATGAACTTGCTTGTGCACTTGCCATGCTGTGTGATTCGAGCCCAACAGATGAAAGAAATGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.31

Weight (kDa)

10.9

Isoelectric Point (pI)

62.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 318
AccII CGCG 2 cut(s) 249, 383
AciI CCGC 6 cut(s) 86, 89, 247, 271, 334, 381
AclI AACGTT 1 cut(s) 327
AclWI GGATC 5 cut(s) 8, 106, 206, 220, 525
AcsI RAATTY 1 cut(s) 507
AcyI GRCGYC 2 cut(s) 114, 319
AfiI CCNNNNNNNGG 5 cut(s) 30, 95, 110, 258, 296
AgsI TTSAA 2 cut(s) 77, 223
AhdI GACNNNNNGTC 1 cut(s) 539
AluBI AGCT 3 cut(s) 150, 430, 469
AluI AGCT 3 cut(s) 150, 430, 469
Alw21I GWGCWC 2 cut(s) 476, 570
Alw26I GTCTC 2 cut(s) 175, 349
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 5 cut(s) 8, 106, 206, 220, 525
Ama87I CYCGRG 1 cut(s) 295
AoxI GGCC 2 cut(s) 66, 298
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 2 cut(s) 4, 150
ApoI RAATTY 1 cut(s) 507
AseI ATTAAT 1 cut(s) 491
AspLEI GCGC 2 cut(s) 251, 321
AspS9I GGNCC 3 cut(s) 137, 298, 377
AsuC2I CCSGG 2 cut(s) 296, 297
AsuHPI GGTGA 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 295
AvaII GGWCC 2 cut(s) 137, 377
BaeGI GKGCMC 1 cut(s) 570
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 2 cut(s) 476, 570
BbvI GCAGC 1 cut(s) 137
BccI CCATC 5 cut(s) 148, 173, 241, 304, 508
BceAI ACGGC 1 cut(s) 306
BcnI CCSGG 2 cut(s) 296, 297
BcoDI GTCTC 2 cut(s) 175, 349
BfaI CTAG 3 cut(s) 41, 210, 374
BfoI RGCGCY 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 32
BglII AGATCT 1 cut(s) 43
BisI GCNGC 3 cut(s) 5, 89, 151
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 3 cut(s) 6, 90, 152
Bme1390I CCNGG 2 cut(s) 296, 297
Bme18I GGWCC 2 cut(s) 137, 377
BmeRI GACNNNNNGTC 1 cut(s) 539
BmeT110I CYCGRG 1 cut(s) 295
BmgT120I GGNCC 3 cut(s) 137, 298, 377
BmiI GGNNCC 2 cut(s) 320, 379
BmrFI CCNGG 2 cut(s) 296, 297
BmsI GCATC 2 cut(s) 100, 295
BpiI GAAGAC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 470
BpuMI CCSGG 2 cut(s) 296, 297
BsaHI GRCGYC 2 cut(s) 114, 319
BsaJI CCNNGG 2 cut(s) 215, 295
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 95, 110, 258, 296
BseDI CCNNGG 2 cut(s) 215, 295
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 5 cut(s) 30, 95, 110, 258, 296
BseMII CTCAG 1 cut(s) 461
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 2 cut(s) 249, 383
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 68, 300
BshNI GGYRCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 35
BsiHKAI GWGCWC 2 cut(s) 476, 570
BsiHKCI CYCGRG 1 cut(s) 295
BsiSI CCGG 3 cut(s) 130, 296, 301
BslFI GGGAC 1 cut(s) 363
BslI CCNNNNNNNGG 5 cut(s) 30, 95, 110, 258, 296
BsmAI GTCTC 2 cut(s) 175, 349
BsmBI CGTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 363
BsnI GGCC 2 cut(s) 68, 300
BsoBI CYCGRG 1 cut(s) 295
Bsp1286I GDGCHC 3 cut(s) 476, 570, 595
Bsp143I GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
Bsp1720I GCTNAGC 1 cut(s) 470
BspACI CCGC 6 cut(s) 86, 89, 247, 271, 334, 381
BspANI GGCC 2 cut(s) 68, 300
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 2 cut(s) 249, 383
BspLI GGNNCC 2 cut(s) 320, 379
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 5 cut(s) 8, 106, 206, 220, 525
BspT107I GGYRCC 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 215, 295
BssMI GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
BssNI GRCGYC 2 cut(s) 114, 319
BssT1I CCWWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 33
BstACI GRCGYC 2 cut(s) 114, 319
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 2 cut(s) 435, 470
BstF5I GGATG 1 cut(s) 286
BstFNI CGCG 2 cut(s) 249, 383
BstH2I RGCGCY 1 cut(s) 322
BstHHI GCGC 2 cut(s) 251, 321
BstKTI GATC 7 cut(s) 16, 46, 101, 201, 228, 461, 520
BstMAI GTCTC 2 cut(s) 175, 349
BstMBI GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
BstMCI CGRYCG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 294, 295
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 2 cut(s) 249, 383
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 405
BstX2I RGATCY 5 cut(s) 13, 43, 198, 225, 517
BstYI RGATCY 5 cut(s) 13, 43, 198, 225, 517
BsuRI GGCC 2 cut(s) 68, 300
BtsCI GGATG 1 cut(s) 286
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 2 cut(s) 251, 321
Cfr13I GGNCC 3 cut(s) 137, 298, 377
Cfr9I CCCGGG 1 cut(s) 295
CseI GACGC 1 cut(s) 103
CviAII CATG 3 cut(s) 422, 576, 615
CviJI RGCY 7 cut(s) 68, 150, 213, 300, 430, 469, 593
CviKI_1 RGCY 7 cut(s) 68, 150, 213, 300, 430, 469, 593
DdeI CTNAG 2 cut(s) 435, 470
DinI GGCGCC 1 cut(s) 320
DpnI GATC 7 cut(s) 15, 45, 100, 200, 227, 460, 519
DpnII GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
DriI GACNNNNNGTC 1 cut(s) 539
Eam1105I GACNNNNNGTC 1 cut(s) 539
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 595
Eco47I GGWCC 2 cut(s) 137, 377
Eco88I CYCGRG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 595
EgeI GGCGCC 1 cut(s) 320
EheI GGCGCC 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 175
FaeI CATG 3 cut(s) 425, 579, 618
FaiI YATR 8 cut(s) 244, 423, 444, 465, 526, 528, 577, 616
FaqI GGGAC 1 cut(s) 363
FatI CATG 3 cut(s) 421, 575, 614
FauI CCCGC 2 cut(s) 327, 388
Fnu4HI GCNGC 3 cut(s) 5, 89, 151
FokI GGATG 1 cut(s) 273
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 3 cut(s) 5, 89, 151
FspBI CTAG 3 cut(s) 41, 210, 374
GlaI GCGC 2 cut(s) 250, 320
GluI GCNGC 3 cut(s) 5, 89, 151
HaeII RGCGCY 1 cut(s) 322
HaeIII GGCC 2 cut(s) 68, 300
HapII CCGG 3 cut(s) 130, 296, 301
HgaI GACGC 1 cut(s) 103
HhaI GCGC 2 cut(s) 251, 321
Hin1I GRCGYC 2 cut(s) 114, 319
Hin1II CATG 3 cut(s) 425, 579, 618
Hin6I GCGC 2 cut(s) 249, 319
HinP1I GCGC 2 cut(s) 249, 319
HinfI GANTC 3 cut(s) 394, 410, 586
HpaII CCGG 3 cut(s) 130, 296, 301
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 568
Hpy188I TCNGA 4 cut(s) 18, 261, 513, 522
Hpy188III TCNNGA 1 cut(s) 544
Hpy8I GTNNAC 1 cut(s) 568
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 4 cut(s) 7, 27, 446, 568
HpyF3I CTNAG 2 cut(s) 435, 470
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 2 cut(s) 114, 319
Hsp92II CATG 3 cut(s) 425, 579, 618
HspAI GCGC 2 cut(s) 249, 319
KasI GGCGCC 1 cut(s) 318
Kzo9I GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
LmnI GCTCC 2 cut(s) 158, 498
LpnPI CCDG 5 cut(s) 37, 143, 309, 314, 379
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 100, 295
MaeI CTAG 3 cut(s) 41, 210, 374
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 1 cut(s) 323
MalI GATC 7 cut(s) 15, 45, 100, 200, 227, 460, 519
MboI GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
MboII GAAGA 3 cut(s) 235, 405, 559
MflI RGATCY 5 cut(s) 13, 43, 198, 225, 517
MhlI GDGCHC 3 cut(s) 476, 570, 595
MluCI AATT 3 cut(s) 175, 492, 507
Mly113I GGCGCC 1 cut(s) 319
MlyI GAGTC 2 cut(s) 388, 419
MmeI TCCRAC 2 cut(s) 41, 253
MnlI CCTC 6 cut(s) 79, 176, 262, 302, 309, 488
MseI TTAA 1 cut(s) 491
MspI CCGG 3 cut(s) 130, 296, 301
MspR9I CCNGG 2 cut(s) 296, 297
MvnI CGCG 2 cut(s) 249, 383
NarI GGCGCC 1 cut(s) 319
NciI CCSGG 2 cut(s) 296, 297
NdeII GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
NlaIII CATG 3 cut(s) 425, 579, 618
NlaIV GGNNCC 2 cut(s) 320, 379
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 3 cut(s) 6, 90, 152
PleI GAGTC 2 cut(s) 388, 418
PluTI GGCGCC 1 cut(s) 322
PpsI GAGTC 2 cut(s) 388, 418
PpuMI RGGWCCY 1 cut(s) 377
PshBI ATTAAT 1 cut(s) 491
Psp1406I AACGTT 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 320, 379
PspPI GGNCC 3 cut(s) 137, 298, 377
PspPPI RGGWCCY 1 cut(s) 377
PsuI RGATCY 5 cut(s) 13, 43, 198, 225, 517
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 3 cut(s) 5, 89, 151
Sau3AI GATC 7 cut(s) 13, 43, 98, 198, 225, 458, 517
Sau96I GGNCC 3 cut(s) 137, 298, 377
SchI GAGTC 2 cut(s) 388, 419
ScrFI CCNGG 2 cut(s) 296, 297
SduI GDGCHC 3 cut(s) 476, 570, 595
SetI ASST 8 cut(s) 26, 152, 221, 330, 352, 379, 432, 471
SfaNI GCATC 2 cut(s) 100, 295
SfoI GGCGCC 1 cut(s) 320
SinI GGWCC 2 cut(s) 137, 377
SmaI CCCGGG 1 cut(s) 297
Sse9I AATT 3 cut(s) 175, 492, 507
SsiI CCGC 6 cut(s) 86, 89, 247, 271, 334, 381
SspDI GGCGCC 1 cut(s) 318
SspMI CTAG 3 cut(s) 41, 210, 374
StyD4I CCNGG 2 cut(s) 294, 295
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 330
TaqI TCGA 1 cut(s) 589
TasI AATT 3 cut(s) 175, 492, 507
TauI GCSGC 1 cut(s) 91
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TseI GCWGC 2 cut(s) 4, 150
TspDTI ATGAA 3 cut(s) 543, 569, 617
TspGWI ACGGA 1 cut(s) 111
TspMI CCCGGG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 137, 377
VspI ATTAAT 1 cut(s) 491
XapI RAATTY 1 cut(s) 507
XmaI CCCGGG 1 cut(s) 295
XspI CTAG 3 cut(s) 41, 210, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.