Rh5AG282900

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000165
Physical Location & Seq
Forward (+)
38316546 .. 38320421
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG282900.1

Sequence Viewer

Length: 1068 bp
ATGTGTTCCATCAAATCTCTACACACACAATGGAGCTCATCAAATTTGTGCATCACTATGAGAAAAAAAATTGAAGAGATGCGTTTGGCGGAGTTGGAAGATGACTATCGATGCAAAAATGGTACACCTCGTCCCCAAGTGTGGAGTAGAATGTTAAGGAGAGCAGCTAAGGTGTATACCATTAAAATGTTTCAGCTATTTGAAACAGAGTTTGTTGGCTGTATGGGAGTTAGACTAAAAGAAGCTTTCAAGAGGGATGAAGTACATTCATATGAAGCAATTGAAGATGGTAAACAAAGTGTACACAAGATTCAGTATAACTCTATATCCTTTGACATTTCTTGTTCTTGCAAGTCTTTTGAATCACTTGGAATCTTGTGTCGTCATGCTTTGAAGGTGTTTGATATCAATAATGTCACTGTTTTACCCACTCAATATATATTGAAGAGGTGGACTAGAGAAGCAAAGAAAGGGATTGATGTAAGCAATAACATTTCTGGAGGTACAAGTGAGAATATAAAGTCTGCTAGATTGTTGTGCCTTAGTGAGCTAATGCATGAAGGAAATAGTGTTTATGACATAGCTTCATTGAGTTGTTCAGGGACAAAGATTGTGAAGGAGCTGTTAGTGGAGGCAATGAAGCGTCTTGAGAAAGACAAGGAAACTCAAGACATGTTGGAAAATTTGAACAAAGTTGGTAATCAGTCCAATCTTGACATTCTAGTAAACTCAGGTCATGTTTTAGATCCACCATGTGCCAAGACTAAAGGAATGACAAATGAAAGAATCAAAGACATAAGGGAGAAAAAACAACGGAAGAATAAGAAAACAAAAGATGCAAGCCAAGACAATCAAGAAAACGTGATTGATTCTTCTTTTATACCAAGAGCTCCACTTCATGTGCCAGCATTTAATCCTCACTTTGGTGTACCTTACACCCCATTTCATAATCAGGGTAATTTAAGTTGGACTTTGGGGAATCCCAATTTCTGTTTCAATTATGGTGTTATGCCTTCCTCAAATCAGAACTCCTGCAACTCTACAAGTACTAATAGAAGAGTATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

355

Amino Acids

40.41

Weight (kDa)

9.1

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 111 - 134 2.1e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 176
AciI CCGC 1 cut(s) 89
AclWI GGATC 1 cut(s) 740
AcsI RAATTY 2 cut(s) 43, 682
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 6 cut(s) 124, 264, 303, 505, 930, 1048
AfiI CCNNNNNNNGG 2 cut(s) 141, 923
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 9 cut(s) 74, 203, 250, 284, 362, 394, 445, 688, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 977, 1009
AleI CACNNNNGTG 1 cut(s) 924
AluBI AGCT 8 cut(s) 36, 167, 196, 245, 550, 584, 622, 890
AluI AGCT 8 cut(s) 36, 167, 196, 245, 550, 584, 622, 890
Alw21I GWGCWC 2 cut(s) 38, 892
AlwI GGATC 1 cut(s) 740
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 43, 682
BanII GRGCYC 2 cut(s) 38, 892
Bbv12I GWGCWC 2 cut(s) 38, 892
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 17, 281
BfaI CTAG 3 cut(s) 456, 528, 722
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
BmcAI AGTACT 1 cut(s) 1048
BmsI GCATC 4 cut(s) 60, 69, 101, 826
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 2 cut(s) 651, 668
Bsa29I ATCGAT 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 923
Bse3DI GCAATG 1 cut(s) 642
Bse8I GATNNNNATC 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 109
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 141, 923
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 744
BseXI GCAGC 1 cut(s) 176
BshVI ATCGAT 1 cut(s) 109
BsiHKAI GWGCWC 2 cut(s) 38, 892
BslFI GGGAC 2 cut(s) 117, 616
BslI CCNNNNNNNGG 2 cut(s) 141, 923
BsmFI GGGAC 2 cut(s) 117, 616
Bsp1286I GDGCHC 2 cut(s) 38, 892
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 1 cut(s) 745
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 743
BspDI ATCGAT 1 cut(s) 109
BspPI GGATC 1 cut(s) 740
BsrDI GCAATG 1 cut(s) 642
BsrGI TGTACA 1 cut(s) 301
BssMI GATC 1 cut(s) 745
BssNAI GTATAC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 3 cut(s) 69, 440, 1051
BstAUI TGTACA 1 cut(s) 301
BstC8I GCNNGC 2 cut(s) 841, 906
BstDEI CTNAG 3 cut(s) 168, 542, 730
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 748
BstMBI GATC 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BstZ17I GTATAC 1 cut(s) 177
Bsu15I ATCGAT 1 cut(s) 109
BsuTUI ATCGAT 1 cut(s) 109
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 2 cut(s) 841, 906
ClaI ATCGAT 1 cut(s) 109
CseI GACGC 1 cut(s) 632
Csp6I GTAC 6 cut(s) 123, 263, 302, 504, 929, 1047
CviAII CATG 6 cut(s) 386, 557, 673, 737, 753, 899
CviQI GTAC 6 cut(s) 123, 263, 302, 504, 929, 1047
DdeI CTNAG 3 cut(s) 168, 542, 730
DpnI GATC 1 cut(s) 747
DpnII GATC 1 cut(s) 745
DraIII CACNNNGTG 1 cut(s) 755
Eam1104I CTCTTC 3 cut(s) 69, 440, 1051
EarI CTCTTC 3 cut(s) 69, 440, 1051
EciI GGCGGA 1 cut(s) 104
Ecl136II GAGCTC 2 cut(s) 36, 890
Eco24I GRGCYC 2 cut(s) 38, 892
Eco32I GATATC 1 cut(s) 406
Eco53kI GAGCTC 2 cut(s) 36, 890
EcoICRI GAGCTC 2 cut(s) 36, 890
EcoRV GATATC 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 558
EcoT38I GRGCYC 2 cut(s) 38, 892
FaeI CATG 6 cut(s) 389, 560, 676, 740, 756, 902
FalI AAGNNNNNCTT 2 cut(s) 955, 987
FaqI GGGAC 2 cut(s) 117, 616
FatI CATG 6 cut(s) 385, 556, 672, 736, 752, 898
FauNDI CATATG 1 cut(s) 271
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 269
FriOI GRGCYC 2 cut(s) 38, 892
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 3 cut(s) 456, 528, 722
GluI GCNGC 1 cut(s) 165
GsuI CTGGAG 1 cut(s) 519
HgaI GACGC 1 cut(s) 632
Hin1II CATG 6 cut(s) 389, 560, 676, 740, 756, 902
HindIII AAGCTT 1 cut(s) 243
HinfI GANTC 6 cut(s) 310, 362, 372, 786, 869, 979
Hpy166II GTNNAC 8 cut(s) 125, 177, 293, 302, 304, 453, 727, 929
Hpy188I TCNGA 1 cut(s) 1026
Hpy188III TCNNGA 6 cut(s) 250, 498, 647, 668, 713, 854
Hpy8I GTNNAC 8 cut(s) 125, 177, 293, 302, 304, 453, 727, 929
HpyAV CCTTC 4 cut(s) 388, 554, 610, 1023
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 6 cut(s) 51, 114, 351, 556, 839, 1035
HpyF3I CTNAG 3 cut(s) 168, 542, 730
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 6 cut(s) 389, 560, 676, 740, 756, 902
Kzo9I GATC 1 cut(s) 745
LmnI GCTCC 3 cut(s) 33, 619, 895
LpnPI CCDG 6 cut(s) 483, 585, 717, 918, 938, 1045
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 4 cut(s) 60, 69, 101, 826
MaeI CTAG 3 cut(s) 456, 528, 722
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 1 cut(s) 415
MalI GATC 1 cut(s) 747
MboI GATC 1 cut(s) 745
MboII GAAGA 7 cut(s) 86, 110, 296, 457, 829, 864, 1068
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 2 cut(s) 38, 892
MluCI AATT 7 cut(s) 43, 69, 279, 682, 958, 985, 997
MmeI TCCRAC 3 cut(s) 75, 657, 947
MnlI CCTC 7 cut(s) 138, 246, 441, 494, 625, 927, 1027
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 4 cut(s) 155, 183, 912, 962
MslI CAYNNNNRTG 4 cut(s) 56, 185, 270, 924
MunI CAATTG 1 cut(s) 279
NdeI CATATG 1 cut(s) 271
NdeII GATC 1 cut(s) 745
NlaIII CATG 6 cut(s) 389, 560, 676, 740, 756, 902
NmuCI GTSAC 1 cut(s) 415
NsiI ATGCAT 1 cut(s) 558
NspI RCATGY 1 cut(s) 676
OliI CACNNNNGTG 1 cut(s) 924
PciI ACATGT 1 cut(s) 672
PfeI GAWTC 6 cut(s) 310, 362, 372, 786, 869, 979
PkrI GCNGC 1 cut(s) 166
PscI ACATGT 1 cut(s) 672
Psp124BI GAGCTC 2 cut(s) 38, 892
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 6 cut(s) 124, 264, 303, 505, 930, 1048
RsaNI GTAC 6 cut(s) 123, 263, 302, 504, 929, 1047
RseI CAYNNNNRTG 4 cut(s) 56, 185, 270, 924
SacI GAGCTC 2 cut(s) 38, 892
SaqAI TTAA 4 cut(s) 155, 183, 912, 962
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 745
ScaI AGTACT 1 cut(s) 1048
SduI GDGCHC 2 cut(s) 38, 892
SfaNI GCATC 4 cut(s) 60, 69, 101, 826
SmiMI CAYNNNNRTG 4 cut(s) 56, 185, 270, 924
SmlI CTYRAG 2 cut(s) 647, 666
SmoI CTYRAG 2 cut(s) 647, 666
Sse9I AATT 7 cut(s) 43, 69, 279, 682, 958, 985, 997
SsiI CCGC 1 cut(s) 89
SspMI CTAG 3 cut(s) 456, 528, 722
SstI GAGCTC 2 cut(s) 38, 892
TaaI ACNGT 1 cut(s) 421
TaiI ACGT 1 cut(s) 864
TaqI TCGA 1 cut(s) 109
TasI AATT 7 cut(s) 43, 69, 279, 682, 958, 985, 997
TatI WGTACW 3 cut(s) 262, 301, 1046
TfiI GAWTC 6 cut(s) 310, 362, 372, 786, 869, 979
Tru1I TTAA 4 cut(s) 155, 183, 912, 962
Tru9I TTAA 4 cut(s) 155, 183, 912, 962
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 9 cut(s) 258, 273, 288, 573, 576, 653, 795, 887, 935
TspGWI ACGGA 1 cut(s) 829
TspRI CASTG 1 cut(s) 424
XapI RAATTY 2 cut(s) 43, 682
XceI RCATGY 1 cut(s) 676
XmiI GTMKAC 1 cut(s) 176
XspI CTAG 3 cut(s) 456, 528, 722
ZrmI AGTACT 1 cut(s) 1048
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.