Rw7G033340

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000165
Physical Location & Seq
Reverse (-)
49071687 .. 49072862
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033340.1

Sequence Viewer

Length: 1176 bp
ATGTATGATGCGGGCATAGGACCAAAGAAATCATTTTTCTACATAGCAAATGAAGTGGGTGATTCGGAAAATGTTGGGTGCACTAAGAAGCACGTCTATAACTACTTGCAAAGGAAAAAGAATGAAATGTTGGAAGCAGGTGATGCACAGAGTTTGCTGAATCACTTTAAGCACAAACAAGGTGAGGATCCTAACTTTTTCTACTCAATGCAATTGGACCAATATAGCCGAATGACGAATTTCTTTTGGAGGGATAGCAGAGCAAAGCTTGATTATGATTGTTTTGGGGATGTTATATGCTTTGACACAACATTTCGTACGAACAAGTATAATTTGATCTGTGCACCTATAGTTGGAGTTAATCATCATTGGAGAAATGTTTTTTTATTGGATGAGACTACGGAGTCATTTGTTTGGTTGTTTGAGTCATTTTTGGAGTCAATGGGAAACAAAGCACCAAAAAATGTTTTCACAGATGAAGATAAAGCAATGGCAAATGCAATTGAAATAGTGTTTCCAAATGCGTGTCATCGATTGTGCACTTGGCATATTGCCAAGAATGCCAGCAAGAGAATTGCTAGTAACCTTGGAAATCCCGAGTTCAAGAAACAGTTCAACCATTGTTTACATGGATGTAGTACTGAAGTTGAATTTCGAGTTTCATGGGATAGCATGATTACTAGATATAATCTTGGAGATCATACTTGGCTTACAAAGTTGTATTCACTTCGACAAAAGTGGTGTCCAGCATTTAATTTGGGTATTTTTTCAGCAAAGATTAGATCAACTCAAAGGAGTGAAAGTACAAACAATGTGTTCCATGGAATCTCTACACACACAATGGAGCTCATTAAATTTGTTCATCACTATGAGAAAAACATTGAAGAGAATCGTTTAGCAGAGTTGGAAGATGACTACCGTTGCAAAAATGGTGCACCACGTCCAAAAGTATGGAGTAAAATCTTAAGGAGTGCAGCCAAGGTTTATACTAACAAAATGTTTCAACTTTTTGAAATAGAATTCTATGGCTGTATGGGAGTTAGACTAAAAGAAGTTTCCAGCCGGGATGAAGTTTATATATATCAAGCCATTGAAGATGGTCGTCAAAGTGTGCACAAGATTGAATATAATTCTACATCCTTGAACATTAATTGTTCTTGTAAGTCATTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

391

Amino Acids

45.71

Weight (kDa)

8.13

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 98 - 187 2.7e-24 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
AasI GACNNNNNNGTC 1 cut(s) 403
Acc36I ACCTGC 1 cut(s) 128
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 182, 195
AcsI RAATTY 4 cut(s) 238, 650, 854, 1019
AcuI CTGAAG 1 cut(s) 663
AfaI GTAC 3 cut(s) 319, 640, 805
AfiI CCNNNNNNNGG 1 cut(s) 353
AflII CTTAAG 1 cut(s) 964
AjiI CACGTC 2 cut(s) 94, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 2 cut(s) 268, 847
AluI AGCT 2 cut(s) 268, 847
Alw21I GWGCWC 6 cut(s) 83, 346, 542, 849, 937, 1116
Alw26I GTCTC 1 cut(s) 389
Alw44I GTGCAC 5 cut(s) 79, 342, 538, 933, 1112
AlwI GGATC 2 cut(s) 182, 195
Ama87I CYCGRG 1 cut(s) 596
ApaLI GTGCAC 5 cut(s) 79, 342, 538, 933, 1112
ApeKI GCWGC 1 cut(s) 974
ApoI RAATTY 4 cut(s) 238, 650, 854, 1019
ArsI GACNNNNNNTTYG 2 cut(s) 727, 759
AseI ATTAAT 1 cut(s) 1149
Asp700I GAANNNNTTC 1 cut(s) 611
AspS9I GGNCC 2 cut(s) 20, 217
AsuC2I CCSGG 1 cut(s) 1064
AsuHPI GGTGA 3 cut(s) 71, 152, 194
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 2 cut(s) 20, 217
BaeGI GKGCMC 5 cut(s) 83, 346, 542, 937, 1116
BamHI GGATCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 849
Bbv12I GWGCWC 6 cut(s) 83, 346, 542, 849, 937, 1116
BbvI GCAGC 1 cut(s) 986
BccI CCATC 1 cut(s) 1091
BcnI CCSGG 1 cut(s) 1064
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 2 cut(s) 579, 681
BfmI CTRYAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 964
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 975
BlsI GCNGC 1 cut(s) 976
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 1 cut(s) 1064
Bme18I GGWCC 2 cut(s) 20, 217
BmeT110I CYCGRG 1 cut(s) 596
BmgBI CACGTC 2 cut(s) 94, 941
BmgT120I GGNCC 2 cut(s) 20, 217
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 1064
BmsI GCATC 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 1064
Bsa29I ATCGAT 1 cut(s) 532
BsaJI CCNNGG 3 cut(s) 586, 820, 978
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 495
BseCI ATCGAT 1 cut(s) 532
BseDI CCNNGG 3 cut(s) 586, 820, 978
BseGI GGATG 5 cut(s) 295, 397, 638, 1072, 1136
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 495
BseSI GKGCMC 5 cut(s) 83, 346, 542, 937, 1116
BseXI GCAGC 1 cut(s) 986
BsgI GTGCAG 1 cut(s) 993
BshVI ATCGAT 1 cut(s) 532
BsiHKAI GWGCWC 6 cut(s) 83, 346, 542, 849, 937, 1116
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 1 cut(s) 1063
BsiWI CGTACG 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 6 cut(s) 83, 346, 542, 849, 937, 1116
Bsp143I GATC 4 cut(s) 187, 336, 697, 782
Bsp19I CCATGG 1 cut(s) 820
BspACI CCGC 1 cut(s) 11
BspDI ATCGAT 1 cut(s) 532
BspLI GGNNCC 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 2 cut(s) 182, 195
BspTI CTTAAG 1 cut(s) 964
BsrDI GCAATG 1 cut(s) 495
BssECI CCNNGG 3 cut(s) 586, 820, 978
BssMI GATC 4 cut(s) 187, 336, 697, 782
BssT1I CCWWGG 3 cut(s) 586, 820, 978
Bst4CI ACNGT 2 cut(s) 612, 920
Bst6I CTCTTC 1 cut(s) 879
BstAFI CTTAAG 1 cut(s) 964
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 13, 565
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 5 cut(s) 295, 397, 638, 1072, 1136
BstKTI GATC 4 cut(s) 190, 339, 700, 785
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 187, 336, 697, 782
BstMWI GCNNNNNNNGC 2 cut(s) 143, 560
BstSCI CCNGG 1 cut(s) 1062
BstSFI CTRYAG 1 cut(s) 348
BstSLI GKGCMC 5 cut(s) 83, 346, 542, 937, 1116
BstV1I GCAGC 1 cut(s) 986
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 951
BstYI RGATCY 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 532
BsuTUI ATCGAT 1 cut(s) 532
BtgI CCRYGG 1 cut(s) 820
BtrI CACGTC 2 cut(s) 94, 941
BtsCI GGATG 5 cut(s) 295, 397, 638, 1072, 1136
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 13, 565
Cfr13I GGNCC 2 cut(s) 20, 217
ClaI ATCGAT 1 cut(s) 532
Csp6I GTAC 3 cut(s) 318, 639, 804
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 4 cut(s) 629, 663, 673, 821
CviJI RGCY 8 cut(s) 228, 268, 709, 847, 977, 1029, 1062, 1088
CviKI_1 RGCY 8 cut(s) 228, 268, 709, 847, 977, 1029, 1062, 1088
CviQI GTAC 3 cut(s) 318, 639, 804
DdeI CTNAG 1 cut(s) 84
DpnI GATC 4 cut(s) 189, 338, 699, 784
DpnII GATC 4 cut(s) 187, 336, 697, 782
DrdI GACNNNNNNGTC 1 cut(s) 403
DseDI GACNNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 879
EarI CTCTTC 1 cut(s) 879
Ecl136II GAGCTC 1 cut(s) 847
Eco130I CCWWGG 3 cut(s) 586, 820, 978
Eco24I GRGCYC 1 cut(s) 849
Eco47I GGWCC 2 cut(s) 20, 217
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 847
EcoRI GAATTC 1 cut(s) 1019
EcoT14I CCWWGG 3 cut(s) 586, 820, 978
EcoT38I GRGCYC 1 cut(s) 849
ErhI CCWWGG 3 cut(s) 586, 820, 978
FaeI CATG 4 cut(s) 632, 666, 676, 824
FatI CATG 4 cut(s) 628, 662, 672, 820
FauI CCCGC 1 cut(s) 4
Fnu4HI GCNGC 1 cut(s) 975
FokI GGATG 5 cut(s) 302, 404, 645, 1079, 1123
FriOI GRGCYC 1 cut(s) 849
Fsp4HI GCNGC 1 cut(s) 975
FspBI CTAG 2 cut(s) 579, 681
GluI GCNGC 1 cut(s) 975
HapII CCGG 1 cut(s) 1063
Hin1II CATG 4 cut(s) 632, 666, 676, 824
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 7 cut(s) 62, 160, 404, 425, 437, 825, 889
HpaII CCGG 1 cut(s) 1063
HphI GGTGA 3 cut(s) 71, 152, 194
Hpy166II GTNNAC 6 cut(s) 81, 344, 540, 626, 935, 1114
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 596, 604
Hpy8I GTNNAC 6 cut(s) 81, 344, 540, 626, 935, 1114
HpyCH4III ACNGT 2 cut(s) 612, 920
HpyCH4IV ACGT 2 cut(s) 93, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 560
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 93, 940
Hsp92II CATG 4 cut(s) 632, 666, 676, 824
Kzo9I GATC 4 cut(s) 187, 336, 697, 782
LmnI GCTCC 1 cut(s) 844
LpnPI CCDG 5 cut(s) 123, 577, 759, 1072, 1076
Lsp1109I GCAGC 1 cut(s) 986
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 579, 681
MaeII ACGT 2 cut(s) 93, 940
MaeIII GTNAC 1 cut(s) 581
MalI GATC 4 cut(s) 189, 338, 699, 784
MboI GATC 4 cut(s) 187, 336, 697, 782
MboII GAAGA 4 cut(s) 491, 896, 920, 1106
MfeI CAATTG 2 cut(s) 212, 501
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 6 cut(s) 83, 346, 542, 849, 937, 1116
MlyI GAGTC 3 cut(s) 413, 434, 446
MmeI TCCRAC 3 cut(s) 111, 334, 885
MnlI CCTC 2 cut(s) 178, 243
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 6 cut(s) 168, 360, 753, 852, 965, 1149
MslI CAYNNNNRTG 1 cut(s) 867
MspCI CTTAAG 1 cut(s) 964
MspI CCGG 1 cut(s) 1063
MspR9I CCNGG 1 cut(s) 1064
MunI CAATTG 2 cut(s) 212, 501
Mva1269I GAATGC 1 cut(s) 565
MwoI GCNNNNNNNGC 2 cut(s) 143, 560
NciI CCSGG 1 cut(s) 1064
NcoI CCATGG 1 cut(s) 820
NdeII GATC 4 cut(s) 187, 336, 697, 782
NlaIII CATG 4 cut(s) 632, 666, 676, 824
NlaIV GGNNCC 1 cut(s) 189
PaqCI CACCTGC 1 cut(s) 128
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 4 cut(s) 62, 160, 825, 889
Pfl23II CGTACG 1 cut(s) 317
PkrI GCNGC 1 cut(s) 976
PleI GAGTC 3 cut(s) 412, 433, 445
PpsI GAGTC 3 cut(s) 412, 433, 445
PshBI ATTAAT 1 cut(s) 1149
Psp124BI GAGCTC 1 cut(s) 849
PspLI CGTACG 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 20, 217
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 3 cut(s) 319, 640, 805
RsaNI GTAC 3 cut(s) 318, 639, 804
RseI CAYNNNNRTG 1 cut(s) 867
SacI GAGCTC 1 cut(s) 849
SaqAI TTAA 6 cut(s) 168, 360, 753, 852, 965, 1149
SatI GCNGC 1 cut(s) 975
Sau3AI GATC 4 cut(s) 187, 336, 697, 782
Sau96I GGNCC 2 cut(s) 20, 217
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 3 cut(s) 413, 434, 446
ScrFI CCNGG 1 cut(s) 1064
SduI GDGCHC 6 cut(s) 83, 346, 542, 849, 937, 1116
SetI ASST 9 cut(s) 96, 142, 184, 270, 349, 588, 849, 943, 984
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 20, 217
SmiMI CAYNNNNRTG 1 cut(s) 867
SmlI CTYRAG 1 cut(s) 964
SmoI CTYRAG 1 cut(s) 964
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 579, 681
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 1 cut(s) 1062
StyI CCWWGG 3 cut(s) 586, 820, 978
TaaI ACNGT 2 cut(s) 612, 920
TaiI ACGT 2 cut(s) 96, 943
TaqI TCGA 3 cut(s) 532, 655, 730
TatI WGTACW 2 cut(s) 638, 803
TfiI GAWTC 4 cut(s) 62, 160, 825, 889
Tru1I TTAA 6 cut(s) 168, 360, 753, 852, 965, 1149
Tru9I TTAA 6 cut(s) 168, 360, 753, 852, 965, 1149
TseI GCWGC 1 cut(s) 974
TspDTI ATGAA 6 cut(s) 66, 138, 492, 651, 851, 1083
TspGWI ACGGA 1 cut(s) 416
Vha464I CTTAAG 1 cut(s) 964
VneI GTGCAC 5 cut(s) 79, 342, 538, 933, 1112
VpaK11BI GGWCC 2 cut(s) 20, 217
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 4 cut(s) 238, 650, 854, 1019
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 2 cut(s) 579, 681
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.