MD15G1227300.v1.1

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000165
Physical Location & Seq
Reverse (-)
18463233 .. 18466312
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1227300.v1.1.491

Sequence Viewer

Length: 2379 bp
ATGGAGTTTGAACCGTTGAGCTTGGGCAGTGATGATGTTCTTGAATTCGACATGATGGGTCTGGGTTACATTGACCAATCTGTTGACCATGATGACGTCCTTCATGATTCTTCTGCCACTGCTACTCCCACTCCTACTGGTTCCGATGTTGTCAGTAGTGTTGCTGTTTTGGAGCATTACATCCCGGAAGGAGACAGTAGCCTTGAACCCTGTGAGGGGATGGAATTCGAATCTGAGGAGGCTGCCAAGGCCTTTTACAATTCCTATGCTCGCCGCATTGGCTTCAGCACTCGTGTCAGCATGTCTCGTCGCTCCAGGCGCGATGGCGCCATCATTCAGCGGTCTTTTGTTTGTGCCAAGGAGGGATTTCGTGTCAACAAGAATGGGAAGTCTGGGTCTGACTGCGAAGGGCGGGCCAAGCGCCCCCGAGCAGAGACCCGAGTTGGTTGTAAGGCCATGTTGGTAATAAAGATTCACGACTCTGGGAGATGGGTTGTGTCTGCTTTTGTTAAGGAGCATAACCATGAGCTGGTTCCACCTGATAAGGTGCATTCCCTTCGCTCTCATCGTCATGTCTCGGGTTCTGCAAAGTCTTTGATTGATACCTTGCAGGGTGCTGGGATTGGCCCCAGAGGAATTATGTCTGCCCTCGTCAAAGAATATGGTGGAATTAGGAATGTTGGCTTCACGGAGCGTGACTGCAGGAATTACATGAGGAGTTGTAAGCAAAGGACCCTTGGAGGCGACACTCAGCTGCTCTTGGATTACTTGAAGGACAGGCAAGCTAAGGACCCGGCATTCTTCTTTGCTGTGCAGGGAGATGAAGATCAGTGCATGGGCAATTTCTTCTGGGTTGATCCTAAGGCAAGGAATGACTATACTTACTTCGGTGACACTGTTACCTTTGACACAACTTACAGGTCAAACCGCTATCGGTTGCCTTTTGCACCTTTCACAGGGGTTAACCATCATGGACAGCCTGTGTTTTTTGGCTGTGCCCTCCTGATAAATGAATCTGAGGCATCGTTTCTTTGGCTTTTCAAAACATGGCTCATGGCAATGTCTGGCCAACCTCCACTGTCAATTACGACTGATCATGATCGGGTGATTACCCTGGCCATTACCCAGGTTTTCCCTGAGACTCGACACCGCTTCTGCAAGTGGCACATATTTAAAGAATGCCAAGAGAAGTTGTCCTCTGTGCTTTGTGAGCATTCCAACTTTGAATCAGAGCTTCATAAATGTGTCAACCTGAGTGAATCAATTGAAGAGTTTGAGTCTTGTTGGCTGTCCCTAATTGGTAAATATGATCTCAGGGAGCATAAATGGCTCCAATCGATGTATGCTGATCGGCAGCAGTGGGTCCCTGGGTACCTGAGAGGCACCTTCTTTGCAGAAATGTCAGTAACACAGTGCAGTGATAGCATGAACTCTTATTTTGATGGATATGTCAATGCATCAACAACTCTACAGCTGTTTGTTAAGCAGTATGAGAAAGCTGTTGAAAGTCGGTATGAGAAAGAAGTGAGGGCAGATTATGATACTATAAACACTGCTCCGGTTCTTAAGACCCCTTCGCCCATGGAGAAACAGGCAGCTGGGCTTTACACGAGGAAATTGTTTACGAAATTTCAAGAGGAGTTGGTTGAGACGTTAACATTTTTGGCAACGAAGGTTGAGGACGAGGAGGCAGGATCCATTTATCAAGTTGCTAAATTTGGGGAAAGTCATAAAGCTTATACGGTTAGATTTAACGTTCATGAGATGAAAGCATTTTGTAGTTGCCAGATGTTTGAGTTTTCTGGCCTTCTTTGCGCACACATCTTGACAGTTTTTAGGGTGACAAATGTTCTCACTCTGCCATCTCATTTCATTTTGAAGCGTTGGACGAGGAATGCCAAGAGTGGTGTCATATTGGAGGAACATGCCGGCGATTTGCTGAGTAAGTCACAAGAATCTCTAACAGTACGGTACAATAATCTGCGTCACGAGGCACTTAAATATGTTGACGAAGGGATTACAACTGCTGAAATTTATAATGTGGCAATGGACGCCCTTCAAGTGGCTGCAAATAAAGTTGCCACTGAAATGCAGAACGGCAGGAGAGCGGCCACAACTAATACAGCTGGAAGAGAAGATGGGTTTCGTTTGGGAAATCAATCAAACAATACCTTCGGTGATCATAAACGGGGTTTTGAAACTCTATCCGCGGATCACCAGGACAAGAAAATGCAGAAACTAGAGCGTCAACTCGAGCGCGCACGACGGAAATGTGAATGGTATAGAGCTAACTTGCTTTCGGTTTTGAAAGATATTGAGGAGCAAAAGTTAGAGCTCTCTGTTAAAGTTGAAAACATTAAGCTGAGAATGAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

793

Amino Acids

90.29

Weight (kDa)

6.52

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 85 - 179 3e-32 FAR1 DNA-binding domain
MULE PF10551 300 - 392 1.3e-29 MULE transposase domain
SWIM PF04434 587 - 613 1.6e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2037
AatII GACGTC 1 cut(s) 99
Acc16I TGCGCA 1 cut(s) 1816
Acc65I GGTACC 1 cut(s) 1371
AccB1I GGYRCC 3 cut(s) 326, 1371, 1382
AccB7I CCANNNNNTGG 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 2108
AccII CGCG 3 cut(s) 321, 2210, 2259
AciI CCGC 8 cut(s) 274, 340, 412, 928, 1150, 2108, 2208, 2210
AclI AACGTT 1 cut(s) 1755
AclWI GGATC 4 cut(s) 851, 1689, 1702, 2220
AcoI YGGCCR 3 cut(s) 1066, 1116, 2109
AcsI RAATTY 5 cut(s) 44, 224, 1628, 1715, 2031
AcuI CTGAAG 1 cut(s) 268
AcyI GRCGYC 3 cut(s) 96, 327, 2052
AfaI GTAC 3 cut(s) 1373, 1968, 1973
AfiI CCNNNNNNNGG 5 cut(s) 215, 216, 529, 956, 2062
AflII CTTAAG 1 cut(s) 1565
AjnI CCWGG 5 cut(s) 314, 1113, 1125, 1366, 2217
Alw21I GWGCWC 1 cut(s) 2337
Alw26I GTCTC 6 cut(s) 186, 309, 428, 580, 1133, 1643
AlwI GGATC 4 cut(s) 851, 1689, 1702, 2220
Ama87I CYCGRG 4 cut(s) 426, 438, 577, 2252
AoxI GGCC 8 cut(s) 249, 414, 453, 625, 1066, 1116, 1804, 2109
ApeKI GCWGC 5 cut(s) 242, 754, 1354, 1595, 2066
ApoI RAATTY 5 cut(s) 44, 224, 1628, 1715, 2031
Asp718I GGTACC 1 cut(s) 1371
AspLEI GCGC 6 cut(s) 321, 329, 423, 1817, 2259, 2261
AspS9I GGNCC 5 cut(s) 414, 626, 732, 790, 1363
AsuC2I CCSGG 2 cut(s) 185, 794
AsuHPI GGTGA 5 cut(s) 902, 1117, 1852, 2189, 2207
AsuII TTCGAA 1 cut(s) 228
AvaI CYCGRG 4 cut(s) 426, 438, 577, 2252
AvaII GGWCC 3 cut(s) 732, 790, 1363
AxyI CCTNAGG 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 1000
BalI TGGCCA 2 cut(s) 1068, 1118
BamHI GGATCC 1 cut(s) 1694
BanI GGYRCC 3 cut(s) 326, 1371, 1382
BanII GRGCYC 1 cut(s) 2337
BauI CACGAG 3 cut(s) 291, 1609, 1988
Bbv12I GWGCWC 1 cut(s) 2337
BbvI GCAGC 5 cut(s) 229, 741, 1366, 1607, 2053
BccI CCATC 9 cut(s) 49, 214, 317, 338, 483, 975, 1436, 1870, 2132
BceAI ACGGC 1 cut(s) 2113
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 5 cut(s) 316, 1115, 1127, 1368, 2219
BclI TGATCA 2 cut(s) 1093, 2179
BcnI CCSGG 2 cut(s) 185, 794
BcoDI GTCTC 6 cut(s) 186, 309, 428, 580, 1133, 1643
BfaI CTAG 1 cut(s) 2240
BfmI CTRYAG 2 cut(s) 700, 1469
BfoI RGCGCY 2 cut(s) 330, 424
BfrI CTTAAG 1 cut(s) 1565
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 7 cut(s) 243, 274, 755, 1355, 1596, 2067, 2109
BlsI GCNGC 7 cut(s) 244, 275, 756, 1356, 1597, 2068, 2110
Bme1390I CCNGG 7 cut(s) 185, 316, 794, 1115, 1127, 1368, 2219
Bme18I GGWCC 3 cut(s) 732, 790, 1363
BmeT110I CYCGRG 4 cut(s) 426, 438, 577, 2252
BmgT120I GGNCC 5 cut(s) 414, 626, 732, 790, 1363
BmrFI CCNGG 7 cut(s) 185, 316, 794, 1115, 1127, 1368, 2219
BmsI GCATC 2 cut(s) 1031, 1466
BpmI CTGGAG 1 cut(s) 298
Bpu10I CCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 228
BpuMI CCSGG 2 cut(s) 185, 794
Bsa29I ATCGAT 1 cut(s) 1337
BsaBI GATNNNNATC 2 cut(s) 825, 1098
BsaHI GRCGYC 3 cut(s) 96, 327, 2052
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 9 cut(s) 246, 357, 736, 1113, 1125, 1366, 1367, 1581, 2208
BsaWI WCCGGW 1 cut(s) 1558
BsaXI ACNNNNNCTCC 6 cut(s) 109, 115, 139, 145, 2312, 2342
Bsc4I CCNNNNNNNGG 5 cut(s) 215, 216, 529, 956, 2062
Bse118I RCCGGY 1 cut(s) 1928
Bse1I ACTGG 1 cut(s) 142
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 2 cut(s) 1065, 2052
Bse8I GATNNNNATC 2 cut(s) 825, 1098
BseBI CCWGG 5 cut(s) 316, 1115, 1127, 1368, 2219
BseCI ATCGAT 1 cut(s) 1337
BseDI CCNNGG 9 cut(s) 246, 357, 736, 1113, 1125, 1366, 1367, 1581, 2208
BseGI GGATG 2 cut(s) 180, 225
BseJI GATNNNNATC 2 cut(s) 825, 1098
BseLI CCNNNNNNNGG 5 cut(s) 215, 216, 529, 956, 2062
BseMI GCAATG 2 cut(s) 1065, 2052
BseMII CTCAG 9 cut(s) 225, 764, 1008, 1128, 1244, 1327, 1367, 1931, 2354
BseNI ACTGG 1 cut(s) 142
BsePI GCGCGC 1 cut(s) 2257
BseRI GAGGAG 5 cut(s) 251, 730, 1652, 1700, 2333
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 5 cut(s) 229, 741, 1366, 1607, 2053
BseYI CCCAGC 2 cut(s) 617, 1598
BsgI GTGCAG 2 cut(s) 833, 1435
Bsh1236I CGCG 3 cut(s) 321, 2210, 2259
BshFI GGCC 8 cut(s) 251, 416, 455, 627, 1068, 1118, 1806, 2111
BshNI GGYRCC 3 cut(s) 326, 1371, 1382
BshVI ATCGAT 1 cut(s) 1337
BsiHKAI GWGCWC 1 cut(s) 2337
BsiHKCI CYCGRG 4 cut(s) 426, 438, 577, 2252
BsiSI CCGG 4 cut(s) 185, 794, 1559, 1929
BslFI GGGAC 2 cut(s) 1276, 1349
BslI CCNNNNNNNGG 5 cut(s) 215, 216, 529, 956, 2062
BsmAI GTCTC 6 cut(s) 186, 309, 428, 580, 1133, 1643
BsmBI CGTCTC 1 cut(s) 1643
BsmFI GGGAC 2 cut(s) 1276, 1349
BsmI GAATGC 5 cut(s) 550, 797, 1184, 1213, 1900
BsnI GGCC 8 cut(s) 251, 416, 455, 627, 1068, 1118, 1806, 2111
Bso31I GGTCTC 1 cut(s) 428
BsoBI CYCGRG 4 cut(s) 426, 438, 577, 2252
Bsp119I TTCGAA 1 cut(s) 228
Bsp1286I GDGCHC 2 cut(s) 1000, 2337
Bsp143I GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
Bsp19I CCATGG 1 cut(s) 1581
BspACI CCGC 8 cut(s) 274, 340, 412, 928, 1150, 2108, 2208, 2210
BspANI GGCC 8 cut(s) 251, 416, 455, 627, 1068, 1118, 1806, 2111
BspCNI CTCAG 9 cut(s) 226, 763, 1009, 1129, 1245, 1326, 1368, 1932, 2355
BspDI ATCGAT 1 cut(s) 1337
BspFNI CGCG 3 cut(s) 321, 2210, 2259
BspHI TCATGA 3 cut(s) 103, 1096, 1759
BspMAI CTGCAG 1 cut(s) 704
BspPI GGATC 4 cut(s) 851, 1689, 1702, 2220
BspT104I TTCGAA 1 cut(s) 228
BspT107I GGYRCC 3 cut(s) 326, 1371, 1382
BspTI CTTAAG 1 cut(s) 1565
BspTNI GGTCTC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 2108
BsrDI GCAATG 2 cut(s) 1065, 2052
BsrFI RCCGGY 1 cut(s) 1928
BsrI ACTGG 1 cut(s) 142
BssAI RCCGGY 1 cut(s) 1928
BssECI CCNNGG 9 cut(s) 246, 357, 736, 1113, 1125, 1366, 1367, 1581, 2208
BssHII GCGCGC 1 cut(s) 2257
BssMI GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
BssNI GRCGYC 3 cut(s) 96, 327, 2052
BssSI CACGAG 3 cut(s) 291, 1609, 1988
BssT1I CCWWGG 4 cut(s) 246, 357, 736, 1581
Bst2BI CACGAG 3 cut(s) 291, 1609, 1988
Bst2UI CCWGG 5 cut(s) 316, 1115, 1127, 1368, 2219
Bst4CI ACNGT 9 cut(s) 15, 197, 898, 1080, 1413, 1744, 1831, 1966, 1971
Bst6I CTCTTC 2 cut(s) 1263, 2125
BstACI GRCGYC 3 cut(s) 96, 327, 2052
BstAFI CTTAAG 1 cut(s) 1565
BstBI TTCGAA 1 cut(s) 228
BstC8I GCNNGC 5 cut(s) 271, 414, 783, 1930, 2259
BstDSI CCRYGG 2 cut(s) 1581, 2208
BstENI CCTNNNNNAGG 1 cut(s) 954
BstF5I GGATG 2 cut(s) 180, 225
BstFNI CGCG 3 cut(s) 321, 2210, 2259
BstH2I RGCGCY 2 cut(s) 330, 424
BstHHI GCGC 6 cut(s) 321, 329, 423, 1817, 2259, 2261
BstKTI GATC 9 cut(s) 829, 859, 1096, 1102, 1312, 1351, 1697, 2182, 2215
BstMAI GTCTC 6 cut(s) 186, 309, 428, 580, 1133, 1643
BstMBI GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
BstMWI GCNNNNNNNGC 9 cut(s) 248, 279, 318, 418, 1210, 1327, 1422, 1812, 2051
BstNI CCWGG 5 cut(s) 316, 1115, 1127, 1368, 2219
BstNSI RCATGY 2 cut(s) 304, 1928
BstSCI CCNGG 7 cut(s) 183, 314, 792, 1113, 1125, 1366, 2217
BstSFI CTRYAG 2 cut(s) 700, 1469
BstSLI GKGCMC 1 cut(s) 1000
BstUI CGCG 3 cut(s) 321, 2210, 2259
BstV1I GCAGC 5 cut(s) 229, 741, 1366, 1607, 2053
BstX2I RGATCY 1 cut(s) 1694
BstYI RGATCY 1 cut(s) 1694
Bsu15I ATCGAT 1 cut(s) 1337
Bsu36I CCTNAGG 1 cut(s) 861
BsuRI GGCC 8 cut(s) 251, 416, 455, 627, 1068, 1118, 1806, 2111
BsuTUI ATCGAT 1 cut(s) 1337
BtgI CCRYGG 2 cut(s) 1581, 2208
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 180, 225
BtsI GCAGTG 5 cut(s) 34, 117, 1364, 1423, 1551
Cac8I GCNNGC 5 cut(s) 271, 414, 783, 1930, 2259
CciI TCATGA 3 cut(s) 103, 1096, 1759
CfoI GCGC 6 cut(s) 321, 329, 423, 1817, 2259, 2261
Cfr10I RCCGGY 1 cut(s) 1928
Cfr13I GGNCC 5 cut(s) 414, 626, 732, 790, 1363
Cfr42I CCGCGG 1 cut(s) 2211
ClaI ATCGAT 1 cut(s) 1337
CseI GACGC 3 cut(s) 1973, 2060, 2234
Csp6I GTAC 3 cut(s) 1372, 1967, 1972
CviQI GTAC 3 cut(s) 1372, 1967, 1972
DinI GGCGCC 1 cut(s) 328
DpnI GATC 9 cut(s) 828, 858, 1095, 1101, 1311, 1350, 1696, 2181, 2214
DpnII GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
DraI TTTAAA 1 cut(s) 1174
EaeI YGGCCR 3 cut(s) 1066, 1116, 2109
Eam1104I CTCTTC 2 cut(s) 1263, 2125
EarI CTCTTC 2 cut(s) 1263, 2125
Ecl136II GAGCTC 1 cut(s) 2335
Eco130I CCWWGG 4 cut(s) 246, 357, 736, 1581
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 2337
Eco31I GGTCTC 1 cut(s) 428
Eco47I GGWCC 3 cut(s) 732, 790, 1363
Eco53kI GAGCTC 1 cut(s) 2335
Eco57I CTGAAG 1 cut(s) 268
Eco81I CCTNAGG 1 cut(s) 861
Eco88I CYCGRG 4 cut(s) 426, 438, 577, 2252
EcoICRI GAGCTC 1 cut(s) 2335
EcoNI CCTNNNNNAGG 1 cut(s) 954
EcoO109I RGGNCCY 3 cut(s) 732, 790, 1363
EcoRI GAATTC 2 cut(s) 44, 224
EcoRII CCWGG 5 cut(s) 314, 1113, 1125, 1366, 2217
EcoT14I CCWWGG 4 cut(s) 246, 357, 736, 1581
EcoT22I ATGCAT 1 cut(s) 1459
EcoT38I GRGCYC 1 cut(s) 2337
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 4 cut(s) 246, 357, 736, 1581
Esp3I CGTCTC 1 cut(s) 1643
FaqI GGGAC 2 cut(s) 1276, 1349
FauI CCCGC 1 cut(s) 405
FbaI TGATCA 2 cut(s) 1093, 2179
Fnu4HI GCNGC 7 cut(s) 243, 274, 755, 1355, 1596, 2067, 2109
FokI GGATG 2 cut(s) 167, 232
FriOI GRGCYC 1 cut(s) 2337
Fsp4HI GCNGC 7 cut(s) 243, 274, 755, 1355, 1596, 2067, 2109
FspBI CTAG 1 cut(s) 2240
FspI TGCGCA 1 cut(s) 1816
GlaI GCGC 6 cut(s) 320, 328, 422, 1816, 2258, 2260
GluI GCNGC 7 cut(s) 243, 274, 755, 1355, 1596, 2067, 2109
GsaI CCCAGC 2 cut(s) 621, 1602
GsuI CTGGAG 1 cut(s) 298
HaeII RGCGCY 2 cut(s) 330, 424
HaeIII GGCC 8 cut(s) 251, 416, 455, 627, 1068, 1118, 1806, 2111
HapII CCGG 4 cut(s) 185, 794, 1559, 1929
HgaI GACGC 3 cut(s) 1973, 2060, 2234
HhaI GCGC 6 cut(s) 321, 329, 423, 1817, 2259, 2261
Hin1I GRCGYC 3 cut(s) 96, 327, 2052
Hin6I GCGC 6 cut(s) 319, 327, 421, 1815, 2257, 2259
HinP1I GCGC 6 cut(s) 319, 327, 421, 1815, 2257, 2259
HincII GTYRAC 7 cut(s) 85, 376, 964, 1249, 1656, 2008, 2249
HindII GTYRAC 7 cut(s) 85, 376, 964, 1249, 1656, 2008, 2249
HindIII AAGCTT 1 cut(s) 1734
HpaI GTTAAC 2 cut(s) 964, 1656
HpaII CCGG 4 cut(s) 185, 794, 1559, 1929
HphI GGTGA 5 cut(s) 902, 1117, 1852, 2189, 2207
Hpy166II GTNNAC 8 cut(s) 85, 376, 964, 1249, 1623, 1656, 2008, 2249
Hpy188I TCNGA 5 cut(s) 145, 235, 400, 1018, 1231
Hpy188III TCNNGA 9 cut(s) 41, 104, 476, 1003, 1097, 1634, 1760, 1825, 1988
Hpy8I GTNNAC 8 cut(s) 85, 376, 964, 1249, 1623, 1656, 2008, 2249
Hpy99I CGWCG 2 cut(s) 312, 2268
HpyCH4III ACNGT 9 cut(s) 15, 197, 898, 1080, 1413, 1744, 1831, 1966, 1971
HpyCH4IV ACGT 3 cut(s) 96, 1652, 1755
HpyF10VI GCNNNNNNNGC 9 cut(s) 248, 279, 318, 418, 1210, 1327, 1422, 1812, 2051
HpySE526I ACGT 3 cut(s) 96, 1652, 1755
Hsp92I GRCGYC 3 cut(s) 96, 327, 2052
HspAI GCGC 6 cut(s) 319, 327, 421, 1815, 2257, 2259
KasI GGCGCC 1 cut(s) 326
KflI GGGWCCC 1 cut(s) 1363
KpnI GGTACC 1 cut(s) 1375
KroI GCCGGC 1 cut(s) 1928
KroNI GCCGGC 1 cut(s) 1930
Ksp22I TGATCA 2 cut(s) 1093, 2179
KspAI GTTAAC 2 cut(s) 964, 1656
KspI CCGCGG 1 cut(s) 2211
Kzo9I GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
LmnI GCTCC 8 cut(s) 172, 317, 514, 691, 1318, 1335, 1561, 2320
Lsp1109I GCAGC 5 cut(s) 229, 741, 1366, 1607, 2053
LweI GCATC 2 cut(s) 1031, 1466
MaeI CTAG 1 cut(s) 2240
MaeII ACGT 3 cut(s) 96, 1652, 1755
MaeIII GTNAC 8 cut(s) 65, 695, 890, 898, 1405, 1840, 1947, 1985
MalI GATC 9 cut(s) 828, 858, 1095, 1101, 1311, 1350, 1696, 2181, 2214
MbiI CCGCTC 1 cut(s) 2108
MboI GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
MboII GAAGA 7 cut(s) 102, 793, 836, 838, 1280, 2142, 2147
MfeI CAATTG 1 cut(s) 1263
MflI RGATCY 1 cut(s) 1694
MhlI GDGCHC 2 cut(s) 1000, 2337
MlsI TGGCCA 2 cut(s) 1068, 1118
MluNI TGGCCA 2 cut(s) 1068, 1118
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 3 cut(s) 473, 1135, 1286
MmeI TCCRAC 2 cut(s) 1242, 1865
Mox20I TGGCCA 2 cut(s) 1068, 1118
Mph1103I ATGCAT 1 cut(s) 1459
MroNI GCCGGC 1 cut(s) 1928
MscI TGGCCA 2 cut(s) 1068, 1118
MslI CAYNNNNRTG 5 cut(s) 522, 570, 1058, 1242, 2087
Msp20I TGGCCA 2 cut(s) 1068, 1118
MspA1I CMGCKG 6 cut(s) 340, 754, 1474, 1598, 2126, 2210
MspCI CTTAAG 1 cut(s) 1565
MspI CCGG 4 cut(s) 185, 794, 1559, 1929
MspR9I CCNGG 7 cut(s) 185, 316, 794, 1115, 1127, 1368, 2219
MunI CAATTG 1 cut(s) 1263
Mva1269I GAATGC 5 cut(s) 550, 797, 1184, 1213, 1900
MvaI CCWGG 5 cut(s) 316, 1115, 1127, 1368, 2219
MvnI CGCG 3 cut(s) 321, 2210, 2259
MwoI GCNNNNNNNGC 9 cut(s) 248, 279, 318, 418, 1210, 1327, 1422, 1812, 2051
NaeI GCCGGC 1 cut(s) 1930
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 2 cut(s) 185, 794
NcoI CCATGG 1 cut(s) 1581
NdeII GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
NgoMIV GCCGGC 1 cut(s) 1928
NmuCI GTSAC 5 cut(s) 695, 890, 1840, 1947, 1985
NsbI TGCGCA 1 cut(s) 1816
NsiI ATGCAT 1 cut(s) 1459
NspI RCATGY 2 cut(s) 304, 1928
NspV TTCGAA 1 cut(s) 228
PaeR7I CTCGAG 1 cut(s) 2252
PagI TCATGA 3 cut(s) 103, 1096, 1759
PasI CCCWGGG 1 cut(s) 1367
PauI GCGCGC 1 cut(s) 2257
PceI AGGCCT 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PctI GAATGC 5 cut(s) 550, 797, 1184, 1213, 1900
PdiI GCCGGC 1 cut(s) 1930
PfeI GAWTC 7 cut(s) 107, 230, 472, 1013, 1226, 1259, 1955
PflMI CCANNNNNTGG 1 cut(s) 529
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 7 cut(s) 244, 275, 756, 1356, 1597, 2068, 2110
PleI GAGTC 3 cut(s) 473, 1135, 1285
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 3 cut(s) 473, 1135, 1285
PpuMI RGGWCCY 3 cut(s) 732, 790, 1363
PsiI TTATAA 1 cut(s) 2037
Psp124BI GAGCTC 1 cut(s) 2337
Psp1406I AACGTT 1 cut(s) 1755
Psp5II RGGWCCY 3 cut(s) 732, 790, 1363
Psp6I CCWGG 5 cut(s) 314, 1113, 1125, 1366, 2217
PspFI CCCAGC 2 cut(s) 617, 1598
PspGI CCWGG 5 cut(s) 314, 1113, 1125, 1366, 2217
PspPI GGNCC 5 cut(s) 414, 626, 732, 790, 1363
PspPPI RGGWCCY 3 cut(s) 732, 790, 1363
PspXI VCTCGAGB 1 cut(s) 2252
PstI CTGCAG 1 cut(s) 704
PsuI RGATCY 1 cut(s) 1694
PteI GCGCGC 1 cut(s) 2257
PvuII CAGCTG 4 cut(s) 754, 1474, 1598, 2126
RsaI GTAC 3 cut(s) 1373, 1968, 1973
RsaNI GTAC 3 cut(s) 1372, 1967, 1972
RseI CAYNNNNRTG 5 cut(s) 522, 570, 1058, 1242, 2087
SacI GAGCTC 1 cut(s) 2337
SacII CCGCGG 1 cut(s) 2211
SatI GCNGC 7 cut(s) 243, 274, 755, 1355, 1596, 2067, 2109
Sau3AI GATC 9 cut(s) 826, 856, 1093, 1099, 1309, 1348, 1694, 2179, 2212
Sau96I GGNCC 5 cut(s) 414, 626, 732, 790, 1363
SchI GAGTC 3 cut(s) 473, 1135, 1286
ScrFI CCNGG 7 cut(s) 185, 316, 794, 1115, 1127, 1368, 2219
SduI GDGCHC 2 cut(s) 1000, 2337
SfaNI GCATC 2 cut(s) 1031, 1466
SfcI CTRYAG 2 cut(s) 700, 1469
SfoI GGCGCC 1 cut(s) 328
Sfr274I CTCGAG 1 cut(s) 2252
Sfr303I CCGCGG 1 cut(s) 2211
SfuI TTCGAA 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 2211
SinI GGWCC 3 cut(s) 732, 790, 1363
SlaI CTCGAG 1 cut(s) 2252
SmiMI CAYNNNNRTG 5 cut(s) 522, 570, 1058, 1242, 2087
SmlI CTYRAG 2 cut(s) 1565, 2252
SmoI CTYRAG 2 cut(s) 1565, 2252
SseBI AGGCCT 1 cut(s) 251
SsiI CCGC 8 cut(s) 274, 340, 412, 928, 1150, 2108, 2208, 2210
SspDI GGCGCC 1 cut(s) 326
SspMI CTAG 1 cut(s) 2240
SstI GAGCTC 1 cut(s) 2337
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 7 cut(s) 183, 314, 792, 1113, 1125, 1366, 2217
StyI CCWWGG 4 cut(s) 246, 357, 736, 1581
TaaI ACNGT 9 cut(s) 15, 197, 898, 1080, 1413, 1744, 1831, 1966, 1971
TaiI ACGT 3 cut(s) 99, 1655, 1758
TaqI TCGA 5 cut(s) 48, 228, 1144, 1337, 2253
TauI GCSGC 2 cut(s) 276, 2111
TfiI GAWTC 7 cut(s) 107, 230, 472, 1013, 1226, 1259, 1955
TseFI GTSAC 5 cut(s) 695, 890, 1840, 1947, 1985
TseI GCWGC 5 cut(s) 242, 754, 1354, 1595, 2066
Tsp45I GTSAC 5 cut(s) 695, 890, 1840, 1947, 1985
TspDTI ATGAA 8 cut(s) 92, 837, 1026, 1226, 1442, 1748, 1781, 1861
TspGWI ACGGA 2 cut(s) 704, 2281
Van91I CCANNNNNTGG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 1565
VpaK11BI GGWCC 3 cut(s) 732, 790, 1363
XagI CCTNNNNNAGG 1 cut(s) 954
XapI RAATTY 5 cut(s) 44, 224, 1628, 1715, 2031
XceI RCATGY 2 cut(s) 304, 1928
XhoI CTCGAG 1 cut(s) 2252
XspI CTAG 1 cut(s) 2240
ZraI GACGTC 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.