Rmu_co8276569.1_g000001

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8276569.1
OG0000165
Physical Location & Seq
Reverse (-)
2 .. 580
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8276569.1_g000001.1.cds

Sequence Viewer

Length: 579 bp
atggatagtggttttcagaagaagatgttagaaaatggtgatgagggatatcagtttggagattgtgaggagctaaaactagggatggaggtgtctagtgaagctgaagcttatgagctgtgcaacaactatgcatataagaaagggtttagtattcgtaaagggcaccttcgaaaagatgcgcagaataatcccaggcagagagagtttttgtgttcaaaagaagggtttctaccagatgaggacttgtgtgaagtgaaaaaggtgaggaggttcgagacgaggacggggtgcaaggctgcatttcggttcaatgtggaaaatggtgtgtggaagatctcttacactaatccgcatcataatcatgagtttgcgagtcctgaagaaagaaaatttctgagatcaggtagaaatataccgagtgttcgtgcagctatggttggttatatggttggtgagagtagcacaccagtggaagcatacccaatcttggaaaaggaatgtggcagtgctgacagtgttgggttcactcataaagattatcatagtcttttgcaaagcaagaagggagaaatgttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

193

Amino Acids

22.05

Weight (kDa)

6.61

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 165
AciI CCGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 392
AcuI CTGAAG 2 cut(s) 126, 402
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 2 cut(s) 219, 313
AjnI CCWGG 1 cut(s) 194
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 5 cut(s) 73, 104, 110, 118, 434
AluI AGCT 5 cut(s) 73, 104, 110, 118, 434
Alw26I GTCTC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 299, 431
ApoI RAATTY 1 cut(s) 392
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 184
AsuHPI GGTGA 3 cut(s) 50, 277, 467
AsuII TTCGAA 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 165
BarI GAAGNNNNNNTAC 4 cut(s) 216, 248, 326, 358
BbvI GCAGC 2 cut(s) 286, 443
BccI CCATC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 2 cut(s) 80, 96
BglII AGATCT 1 cut(s) 336
BisI GCNGC 2 cut(s) 300, 432
BlsI GCNGC 2 cut(s) 301, 433
Bme1390I CCNGG 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 167
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 2 cut(s) 169, 364
Bpu14I TTCGAA 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 470
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 1 cut(s) 470
BseRI GAGGAG 2 cut(s) 83, 283
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 2 cut(s) 286, 443
BsgI GTGCAG 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 336, 401
BspACI CCGC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 390
BspHI TCATGA 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 167
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 165
BsrI ACTGG 1 cut(s) 470
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 2 cut(s) 336, 401
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 2 cut(s) 339, 404
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 2 cut(s) 336, 401
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 286, 443
BstX2I RGATCY 1 cut(s) 336
BstYI RGATCY 1 cut(s) 336
BtsCI GGATG 1 cut(s) 90
BtsI GCAGTG 1 cut(s) 514
BtsIMutI CAGTG 3 cut(s) 477, 514, 523
CciI TCATGA 1 cut(s) 364
CfoI GCGC 1 cut(s) 184
CviAII CATG 1 cut(s) 365
CviJI RGCY 6 cut(s) 73, 104, 110, 118, 299, 434
CviKI_1 RGCY 6 cut(s) 73, 104, 110, 118, 299, 434
DdeI CTNAG 1 cut(s) 398
DpnI GATC 2 cut(s) 338, 403
DpnII GATC 2 cut(s) 336, 401
Eco32I GATATC 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 126, 402
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 1 cut(s) 368
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 1 cut(s) 364
Fnu4HI GCNGC 2 cut(s) 300, 432
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 300, 432
FspBI CTAG 2 cut(s) 80, 96
FspI TGCGCA 1 cut(s) 183
GlaI GCGC 1 cut(s) 183
GluI GCNGC 2 cut(s) 300, 432
HhaI GCGC 1 cut(s) 184
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 1 cut(s) 376
HphI GGTGA 3 cut(s) 50, 277, 467
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 2 cut(s) 18, 399
Hpy188III TCNNGA 3 cut(s) 277, 365, 380
Hpy8I GTNNAC 1 cut(s) 528
HpyAV CCTTC 3 cut(s) 179, 218, 559
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4V TGCA 6 cut(s) 123, 134, 294, 302, 431, 556
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 2 cut(s) 336, 401
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 181, 208, 249, 390, 393, 483
Lsp1109I GCAGC 2 cut(s) 286, 443
LweI GCATC 2 cut(s) 169, 364
MaeI CTAG 2 cut(s) 80, 96
MalI GATC 2 cut(s) 338, 403
MboI GATC 2 cut(s) 336, 401
MboII GAAGA 4 cut(s) 31, 34, 346, 395
MflI RGATCY 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 1 cut(s) 392
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 7 cut(s) 37, 61, 82, 235, 261, 264, 276
Mph1103I ATGCAT 1 cut(s) 136
MroXI GAANNNNTTC 1 cut(s) 228
MslI CAYNNNNRTG 2 cut(s) 363, 470
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
NdeII GATC 2 cut(s) 336, 401
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 1 cut(s) 167
NsbI TGCGCA 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 136
NspV TTCGAA 1 cut(s) 172
OliI CACNNNNGTG 1 cut(s) 470
PagI TCATGA 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 2 cut(s) 301, 433
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 167
PsuI RGATCY 1 cut(s) 336
RseI CAYNNNNRTG 2 cut(s) 363, 470
SatI GCNGC 2 cut(s) 300, 432
Sau3AI GATC 2 cut(s) 336, 401
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 168
SfaNI GCATC 2 cut(s) 169, 364
SfuI TTCGAA 1 cut(s) 172
SmiMI CAYNNNNRTG 2 cut(s) 363, 470
Sse9I AATT 1 cut(s) 392
SsiI CCGC 1 cut(s) 353
SspMI CTAG 2 cut(s) 80, 96
StyD4I CCNGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 518
TaqI TCGA 2 cut(s) 172, 276
TasI AATT 1 cut(s) 392
TscAI CASTG 3 cut(s) 477, 514, 523
TseI GCWGC 2 cut(s) 299, 431
TspRI CASTG 3 cut(s) 477, 514, 523
XapI RAATTY 1 cut(s) 392
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 80, 96
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.