Rw5G026810

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000165
Physical Location & Seq
Reverse (-)
38916181 .. 38918217
2037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G026810.1

Sequence Viewer

Length: 735 bp
ATGAGAATACCAAATTGGTTTGGGAGTAGTAGATTTACCTTCATATTCTGCAGTAATGAACAGAACCAGAATGCGGTAATTGACGTAGAAGATGATCAAGAACACAACAAGACAATTGATTTGGGAAAAGATTCAATGATTGTGAATCGTCAAGCTAGTAATAATGACAACTTGTATGGAGTAATTGTCAATAGTGAGGAAGAAGCATACAACCTCTACTGTGAGTATGGTGCTAGAATGGGGTTTAGTGTTCGGATAATGCAGAGGAGGAAAACCAACAACTTTGTGAGACAAGTTAATTATGTCTGTTCAAAAGAAGGTTTTAAACTAGATAGTGATCCTTCAGAAGTGAAAAAGGCTTATAGGTTGGACACTAGAACTGGCTGCATAGCAAAAATTCGATTTAGATTGCAAGATAATAATGTATGGAAAGCAACTCTCTTTGTTCCTGAACACAACCACAAGCTTGCAGAGCCAGAAGAAAGACCATTTTTGCGCTCCAATCGAAAAGTGTTAGAAGCTCATAAGGGGGTGATTAGATCAATGAAAAGCCCAGGTATGACTACCATAAATACATATTCATATTTAGCAGAAGAAGTTGGGGGATCTCAAAATGTTGGATTTACAAAGACTGATTGTTACAATTTTGAGAGCAGAGAGAAAATGATTATGCTAGAAGCAGGGGATATCCTATGTTTTTCTACACCGTGCAAGTGGATCAAGAAAATCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

244

Amino Acids

28.28

Weight (kDa)

8.4

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 72 - 157 1.3e-21 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AclWI GGATC 3 cut(s) 332, 613, 725
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 2 cut(s) 135, 312
AjnI CCWGG 1 cut(s) 553
AjuI GAANNNNNNNTTGG 1 cut(s) 30
AluBI AGCT 3 cut(s) 155, 466, 521
AluI AGCT 3 cut(s) 155, 466, 521
Alw26I GTCTC 1 cut(s) 283
AlwI GGATC 3 cut(s) 332, 613, 725
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 1 cut(s) 396
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
Asp700I GAANNNNTTC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 544
BbvI GCAGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 555
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 5 cut(s) 156, 234, 329, 375, 674
BfmI CTRYAG 1 cut(s) 49
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
Bme1390I CCNGG 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 171, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 76
Bsp143I GATC 5 cut(s) 94, 337, 539, 605, 717
BspACI CCGC 1 cut(s) 74
BspMAI CTGCAG 1 cut(s) 53
BspPI GGATC 3 cut(s) 332, 613, 725
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 5 cut(s) 94, 337, 539, 605, 717
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 2 cut(s) 221, 708
BstC8I GCNNGC 1 cut(s) 468
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 5 cut(s) 97, 340, 542, 608, 720
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 5 cut(s) 94, 337, 539, 605, 717
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 468
CfoI GCGC 1 cut(s) 498
CviJI RGCY 7 cut(s) 155, 359, 384, 466, 475, 521, 552
CviKI_1 RGCY 7 cut(s) 155, 359, 384, 466, 475, 521, 552
DpnI GATC 5 cut(s) 96, 339, 541, 607, 719
DpnII GATC 5 cut(s) 94, 337, 539, 605, 717
DraI TTTAAA 1 cut(s) 325
Eco32I GATATC 1 cut(s) 688
Eco57I CTGAAG 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 553
EcoRV GATATC 1 cut(s) 688
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 385
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 5 cut(s) 156, 234, 329, 375, 674
GlaI GCGC 1 cut(s) 497
GluI GCNGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 498
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 2 cut(s) 131, 145
HphI GGTGA 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 255, 346
Hpy188III TCNNGA 3 cut(s) 98, 449, 721
HpyAV CCTTC 3 cut(s) 49, 311, 351
HpyCH4III ACNGT 2 cut(s) 221, 708
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 6 cut(s) 51, 262, 387, 412, 470, 711
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 1 cut(s) 496
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 5 cut(s) 94, 337, 539, 605, 717
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 7 cut(s) 80, 366, 462, 489, 540, 567, 666
Lsp1109I GCAGC 1 cut(s) 371
MaeI CTAG 5 cut(s) 156, 234, 329, 375, 674
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 638
MalI GATC 5 cut(s) 96, 339, 541, 607, 719
MboI GATC 5 cut(s) 94, 337, 539, 605, 717
MboII GAAGA 4 cut(s) 101, 212, 491, 605
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 1 cut(s) 605
MluCI AATT 7 cut(s) 13, 78, 114, 183, 298, 396, 643
MmeI TCCRAC 2 cut(s) 348, 598
MnlI CCTC 4 cut(s) 190, 224, 258, 261
MroXI GAANNNNTTC 1 cut(s) 130
MseI TTAA 2 cut(s) 297, 324
MspR9I CCNGG 1 cut(s) 555
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 472
NdeII GATC 5 cut(s) 94, 337, 539, 605, 717
PctI GAATGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 131, 145
PkrI GCNGC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PstI CTGCAG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 605
SaqAI TTAA 2 cut(s) 297, 324
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 5 cut(s) 94, 337, 539, 605, 717
ScrFI CCNGG 1 cut(s) 555
SetI ASST 9 cut(s) 41, 87, 157, 216, 322, 368, 468, 523, 559
SfcI CTRYAG 1 cut(s) 49
Sse9I AATT 7 cut(s) 13, 78, 114, 183, 298, 396, 643
SsiI CCGC 1 cut(s) 74
SspMI CTAG 5 cut(s) 156, 234, 329, 375, 674
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 2 cut(s) 221, 708
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 400, 505, 729
TasI AATT 7 cut(s) 13, 78, 114, 183, 298, 396, 643
TfiI GAWTC 2 cut(s) 131, 145
Tru1I TTAA 2 cut(s) 297, 324
Tru9I TTAA 2 cut(s) 297, 324
TseI GCWGC 1 cut(s) 384
TspDTI ATGAA 4 cut(s) 31, 72, 560, 570
XapI RAATTY 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 5 cut(s) 156, 234, 329, 375, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.