Rroxscaffold_7G00187000

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000165
Physical Location & Seq
Reverse (-)
26346734 .. 26350595
3862 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187000.1

Sequence Viewer

Length: 2379 bp
ATGGATAATGAGATGATTGAATTCGACATCGGGTTGGGAGGCCGGGAGGGGGACGATGATTTTGTCGAAATTGAGCACCCGGTCGAAGATGAAGAGATGGTTGATAGCCCTCTACTTGGCAGTGCTAGTGGCAGTGCCAATGGCGTCGGCTTTAGTGGAGGGAGTGGTGAAATTTACCTTCCTGAGGGGGATCTCTTGGACCTTGAACCTTATGATGGCATGGAGTTTGAGTCTGAAGAGGCTGCCAAGGCATTTTACAATTCATATGCCCGCCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGCTCCAGGCGCGATGGCGCCATCATACAGAGGCAATTTGTTTGTGCGAAAGAGGGTTTTCGGAATTTGAATGAGAAGCGCACCAAGGATAGAGAGATCAAGCGCCCGCGGACTGTAACTAGAGTAGGATGCAAAGCGTCCTTGTCTGTAAAGATGCAAGATTCGGGGAAATGGGTTGTGTCTGGATTTGTTAAAGAGCATAATCATGAGTTGGTTCCCCCTGATCAGGTGCATTGCCTTCGGTCGCACAGGCAGATATCTGGTCCTGCTAAGACCTTGATTGATACATTGCAGGCAGCTGGAATGGGTCCCAGAAGGATCATGTCAGCACTGATTAAAGAATACGGTGGAATAAGCAAAGTTGGATTTACAGAGGTCGACTGTAGGAATTACATGAGGAATAATCGCCAGAGGAGCTTGGATGGGGATATTCAGATGCTATTGGATTATTTGAGACAAATGCAAGCAGATAACCAGAGCTTCTTCTATGCTGTTCAGGGCGATGAGGATCAGGCCATGGGCAATGTCATCTGGGCTGATCCAAAGGCAAGGACGAACTACAATTACTTTGGTGATACTGTTACTTTTGATACTACCTACAGGTCGAACAGGTACCGTTTGCCCTTTGCACCTATCACAGGGATAAACCACCACGGGCAGCCTGTATTGTTTGGTTGTGCTTTTCTGATAAATGAGTCTGAAGCATCATTTGTTTGGCTGTTTAAAACATGGCTTATGGCAATGTCAGGCCGCCCTCCTCCGTTGTCAATTACCACTGACCATGATTCTGTGATACAGTCAGCTATCATGCAGGTCTTCCCACAGACCCGTCACCGATTCTGCAAATGGCACATTTTCAAAAAATGCCAGGAGAAACTATCCCATGTGTTTCTTCAACATCCAAGTTTTGAAGCAGACTTTCATAAATGTGTCAATTTGACTGAGTCAATAGAAGAATTTGAGTCTTGCTGGTTGTCTCTTGTTGATAGATACGATCTCAGGGATCATGAATGGCTTCAAACAGTATACTCTGCTCGCAGGCAGTGGGTCCCTGTCTATCTGCGCGACACCTTTTTTGCAGAAATGTCCATAACCCAGAGAAGTGATAGTATGAACTCGTATTTTGATGGTTATGTGAATGCTTCAACGAATCTGAGTCAGTTCTTTAAGCTCTATGAGAAAGCTCTGGAGAGTCGCAATGAGAAGGAAGTGAAAGCAGATTTTGACACTATGAACACTTCCCCAGTTCTGAAGACCCCATCTCCAATGGAAAAGCAAGCCTCTGAGTTTTATACAAAAAAAATATTTATGAGGTTTCAAGAGGAGCTAGTTGGGACATTAACTTTCACAGCATCCAAGGGCGATGATGATGGGGTAATCATCTCATATCAAGTAGCAAAGTTTGGGGAGGACCATAAAGCATATTATGTTAAACTAAATGTTCTGGACATGATAGCAAGTTGTAGTTGCCAGATGTTTGAGTTTTCAGGTCTTCTTTGCAGACATGTATTAGCAGTCTTTCGAGTGACCAATGTGTTAACTCTGCCATCTCATTACATATTGAAACGATGGACAAGAAATGCCAAGAGCAGCGTTATGTTAGAAGAACGTTCTAGTAATGTATATACCAATTATCTAGAATCTCATACTGTTAGATACAATACTTTACGCTATGAGGCCTTTAAATTTGTAGATGGAGCAAAGTCTTCAGAAACTTATGACCTTGCCCTGGATGCTTTAAAAGAAGCTGCAAAAAAAGTAGCTCATGCAATTAAGAATGATGGGAGAAATGTCATGGTGAACGGGCATATCAGGGGAAACTTGGCTGGTGGTGGAAGTCGGGCCAATTACACCATTGGGGATCATGATGGGAGTTCTGGCCAGAATTTGTCTGAGGATGATATGGACAAAAAAATTCGGGAACTTACATATGAGCTGGAGTGTGCTAATCGAAAGTGTGAAGTTTATCGGGCTAACCTACTTTCACTTTTGAAAGACATTGAGGATCATAAGTTGCAATTGTCAATTAAAGTGGAAAACATTAAGATTAGCATGAAAGACGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

792

Amino Acids

90.47

Weight (kDa)

6.16

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 85 - 176 7.7e-34 FAR1 DNA-binding domain
MULE PF10551 297 - 391 2.3e-30 MULE transposase domain
SWIM PF04434 586 - 611 1.8e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1111
Acc65I GGTACC 1 cut(s) 921
AccB1I GGYRCC 2 cut(s) 326, 921
AccI GTMKAC 2 cut(s) 687, 1335
AccII CGCG 3 cut(s) 321, 418, 1374
AciI CCGC 4 cut(s) 271, 416, 418, 1060
AclI AACGTT 1 cut(s) 1918
AclWI GGATC 7 cut(s) 198, 635, 825, 842, 1320, 2178, 2322
AcoI YGGCCR 1 cut(s) 2188
AcsI RAATTY 7 cut(s) 20, 171, 373, 1265, 1994, 2194, 2223
AcuI CTGAAG 4 cut(s) 255, 1029, 1580, 2001
AcyI GRCGYC 2 cut(s) 144, 327
AfaI GTAC 2 cut(s) 289, 923
AfiI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2038
AflIII ACRYGT 1 cut(s) 1813
AjnI CCWGG 3 cut(s) 314, 1176, 2037
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 757, 1290
AlwI GGATC 7 cut(s) 198, 635, 825, 842, 1320, 2178, 2322
AoxI GGCC 6 cut(s) 40, 822, 1057, 1986, 2151, 2188
ApeKI GCWGC 5 cut(s) 242, 605, 967, 1899, 2057
ApoI RAATTY 7 cut(s) 20, 171, 373, 1265, 1994, 2194, 2223
ArsI GACNNNNNNTTYG 4 cut(s) 44, 76, 1367, 1399
Asp700I GAANNNNTTC 1 cut(s) 1323
Asp718I GGTACC 1 cut(s) 921
AspLEI GCGC 5 cut(s) 321, 329, 390, 414, 1374
AspS9I GGNCC 6 cut(s) 199, 572, 617, 1357, 1720, 2151
AsuC2I CCSGG 2 cut(s) 44, 80
AsuHPI GGTGA 4 cut(s) 179, 893, 1133, 2119
AvaII GGWCC 5 cut(s) 199, 572, 617, 1357, 1720
AxyI CCTNAGG 1 cut(s) 183
BalI TGGCCA 1 cut(s) 2190
BanI GGYRCC 2 cut(s) 326, 921
BauI CACGAG 1 cut(s) 291
BbsI GAAGAC 4 cut(s) 1117, 1568, 1793, 2007
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 5 cut(s) 229, 617, 979, 1911, 2044
BceAI ACGGC 1 cut(s) 258
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 3 cut(s) 316, 1178, 2039
BclI TGATCA 1 cut(s) 532
BcnI CCSGG 2 cut(s) 44, 80
BcoDI GTCTC 2 cut(s) 757, 1290
BfaI CTAG 5 cut(s) 126, 429, 1637, 1923, 1946
BfmI CTRYAG 2 cut(s) 691, 907
BfoI RGCGCY 2 cut(s) 330, 415
BfuAI ACCTGC 1 cut(s) 1111
BisI GCNGC 6 cut(s) 243, 606, 968, 1060, 1900, 2058
BlsI GCNGC 6 cut(s) 244, 607, 969, 1061, 1901, 2059
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 5 cut(s) 44, 80, 316, 1178, 2039
Bme18I GGWCC 5 cut(s) 199, 572, 617, 1357, 1720
BmgT120I GGNCC 6 cut(s) 199, 572, 617, 1357, 1720, 2151
BmiI GGNNCC 7 cut(s) 328, 525, 618, 619, 923, 1358, 1359
BmrFI CCNGG 5 cut(s) 44, 80, 316, 1178, 2039
BmrI ACTGGG 1 cut(s) 1547
BmsI GCATC 6 cut(s) 428, 453, 735, 1022, 1670, 2032
BmuI ACTGGG 1 cut(s) 1547
BpiI GAAGAC 4 cut(s) 1117, 1568, 1793, 2007
BpmI CTGGAG 3 cut(s) 298, 1517, 2267
BpuMI CCSGG 2 cut(s) 44, 80
BsaBI GATNNNNATC 1 cut(s) 816
BsaHI GRCGYC 2 cut(s) 144, 327
BsaJI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1665, 2037
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 1555, 1585
Bsc4I CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2038
Bse1I ACTGG 1 cut(s) 1553
Bse21I CCTNAGG 1 cut(s) 183
Bse3DI GCAATG 5 cut(s) 541, 596, 838, 1056, 1513
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 3 cut(s) 316, 1178, 2039
BseDI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1665, 2037
BseGI GGATG 6 cut(s) 443, 736, 1207, 1661, 2047, 2212
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2038
BseMI GCAATG 5 cut(s) 541, 596, 838, 1056, 1513
BseMII CTCAG 6 cut(s) 174, 1242, 1321, 1454, 1584, 2193
BseNI ACTGG 1 cut(s) 1553
BseRI GAGGAG 4 cut(s) 292, 736, 1056, 1646
BseXI GCAGC 5 cut(s) 229, 617, 979, 1911, 2044
Bsh1236I CGCG 3 cut(s) 321, 418, 1374
Bsh1285I CGRYCG 2 cut(s) 84, 554
BshFI GGCC 6 cut(s) 42, 824, 1059, 1988, 2153, 2190
BshNI GGYRCC 2 cut(s) 326, 921
BsiEI CGRYCG 2 cut(s) 84, 554
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 2 cut(s) 43, 80
BslFI GGGAC 4 cut(s) 65, 603, 1343, 1657
BslI CCNNNNNNNGG 7 cut(s) 49, 116, 184, 215, 535, 947, 2038
BsmAI GTCTC 2 cut(s) 757, 1290
BsmFI GGGAC 4 cut(s) 65, 603, 1343, 1657
BsmI GAATGC 1 cut(s) 1453
BsnI GGCC 6 cut(s) 42, 824, 1059, 1988, 2153, 2190
Bsp1286I GDGCHC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 4 cut(s) 271, 416, 418, 1060
BspANI GGCC 6 cut(s) 42, 824, 1059, 1988, 2153, 2190
BspCNI CTCAG 6 cut(s) 175, 1243, 1320, 1455, 1585, 2194
BspFNI CGCG 3 cut(s) 321, 418, 1374
BspHI TCATGA 3 cut(s) 514, 1315, 2173
BspLI GGNNCC 7 cut(s) 328, 525, 618, 619, 923, 1358, 1359
BspMI ACCTGC 1 cut(s) 1111
BspPI GGATC 7 cut(s) 198, 635, 825, 842, 1320, 2178, 2322
BspT107I GGYRCC 2 cut(s) 326, 921
BsrDI GCAATG 5 cut(s) 541, 596, 838, 1056, 1513
BsrI ACTGG 1 cut(s) 1553
BssECI CCNNGG 7 cut(s) 246, 393, 416, 825, 961, 1665, 2037
BssNAI GTATAC 1 cut(s) 1336
BssNI GRCGYC 2 cut(s) 144, 327
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 4 cut(s) 246, 393, 825, 1665
Bst1107I GTATAC 1 cut(s) 1336
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 316, 1178, 2039
Bst4CI ACNGT 8 cut(s) 424, 656, 692, 889, 926, 1107, 1333, 1960
Bst6I CTCTTC 2 cut(s) 87, 231
BstACI GRCGYC 2 cut(s) 144, 327
BstC8I GCNNGC 7 cut(s) 271, 416, 603, 774, 1345, 1349, 1587
BstDEI CTNAG 7 cut(s) 183, 579, 1251, 1307, 1463, 1593, 2202
BstDSI CCRYGG 3 cut(s) 416, 825, 961
BstENI CCTNNNNNAGG 2 cut(s) 182, 945
BstF5I GGATG 6 cut(s) 443, 736, 1207, 1661, 2047, 2212
BstFNI CGCG 3 cut(s) 321, 418, 1374
BstH2I RGCGCY 2 cut(s) 330, 415
BstHHI GCGC 5 cut(s) 321, 329, 390, 414, 1374
BstMAI GTCTC 2 cut(s) 757, 1290
BstMCI CGRYCG 2 cut(s) 84, 554
BstMWI GCNNNNNNNGC 4 cut(s) 248, 318, 723, 2042
BstNI CCWGG 3 cut(s) 316, 1178, 2039
BstNSI RCATGY 1 cut(s) 1817
BstSCI CCNGG 5 cut(s) 42, 78, 314, 1176, 2037
BstSFI CTRYAG 2 cut(s) 691, 907
BstUI CGCG 3 cut(s) 321, 418, 1374
BstV1I GCAGC 5 cut(s) 229, 617, 979, 1911, 2044
BstV2I GAAGAC 4 cut(s) 1117, 1568, 1793, 2007
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BstZ17I GTATAC 1 cut(s) 1336
Bsu36I CCTNAGG 1 cut(s) 183
BsuRI GGCC 6 cut(s) 42, 824, 1059, 1988, 2153, 2190
BtgI CCRYGG 3 cut(s) 416, 825, 961
BtgZI GCGATG 3 cut(s) 336, 825, 1686
BtsCI GGATG 6 cut(s) 443, 736, 1207, 1661, 2047, 2212
BtsI GCAGTG 3 cut(s) 127, 139, 1358
BtsIMutI CAGTG 5 cut(s) 127, 139, 638, 1083, 1358
BveI ACCTGC 1 cut(s) 1111
Cac8I GCNNGC 7 cut(s) 271, 416, 603, 774, 1345, 1349, 1587
CciI TCATGA 3 cut(s) 514, 1315, 2173
CfoI GCGC 5 cut(s) 321, 329, 390, 414, 1374
Cfr13I GGNCC 6 cut(s) 199, 572, 617, 1357, 1720, 2151
Cfr42I CCGCGG 1 cut(s) 419
CseI GACGC 2 cut(s) 133, 435
Csp6I GTAC 2 cut(s) 288, 922
CspCI CAANNNNNGTGG 2 cut(s) 2322, 2357
CviQI GTAC 2 cut(s) 288, 922
DdeI CTNAG 7 cut(s) 183, 579, 1251, 1307, 1463, 1593, 2202
DinI GGCGCC 1 cut(s) 328
DraI TTTAAA 3 cut(s) 1033, 1993, 2049
EaeI YGGCCR 1 cut(s) 2188
Eam1104I CTCTTC 2 cut(s) 87, 231
EarI CTCTTC 2 cut(s) 87, 231
Eco130I CCWWGG 4 cut(s) 246, 393, 825, 1665
Eco147I AGGCCT 1 cut(s) 1988
Eco32I GATATC 1 cut(s) 567
Eco47I GGWCC 5 cut(s) 199, 572, 617, 1357, 1720
Eco57I CTGAAG 4 cut(s) 255, 1029, 1580, 2001
Eco81I CCTNAGG 1 cut(s) 183
EcoNI CCTNNNNNAGG 2 cut(s) 182, 945
EcoO109I RGGNCCY 2 cut(s) 617, 1357
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 314, 1176, 2037
EcoRV GATATC 1 cut(s) 567
EcoT14I CCWWGG 4 cut(s) 246, 393, 825, 1665
EgeI GGCGCC 1 cut(s) 328
EheI GGCGCC 1 cut(s) 328
ErhI CCWWGG 4 cut(s) 246, 393, 825, 1665
FaqI GGGAC 4 cut(s) 65, 603, 1343, 1657
FauI CCCGC 2 cut(s) 278, 423
FauNDI CATATG 2 cut(s) 265, 2239
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 2 cut(s) 687, 1335
Fnu4HI GCNGC 6 cut(s) 243, 606, 968, 1060, 1900, 2058
FokI GGATG 6 cut(s) 450, 743, 1194, 1648, 2054, 2219
Fsp4HI GCNGC 6 cut(s) 243, 606, 968, 1060, 1900, 2058
FspBI CTAG 5 cut(s) 126, 429, 1637, 1923, 1946
GlaI GCGC 5 cut(s) 320, 328, 389, 413, 1373
GluI GCNGC 6 cut(s) 243, 606, 968, 1060, 1900, 2058
GsuI CTGGAG 3 cut(s) 298, 1517, 2267
HaeII RGCGCY 2 cut(s) 330, 415
HaeIII GGCC 6 cut(s) 42, 824, 1059, 1988, 2153, 2190
HapII CCGG 2 cut(s) 43, 80
HgaI GACGC 2 cut(s) 133, 435
HhaI GCGC 5 cut(s) 321, 329, 390, 414, 1374
Hin1I GRCGYC 2 cut(s) 144, 327
Hin6I GCGC 5 cut(s) 319, 327, 388, 412, 1372
HinP1I GCGC 5 cut(s) 319, 327, 388, 412, 1372
HincII GTYRAC 2 cut(s) 688, 1848
HindII GTYRAC 2 cut(s) 688, 1848
HpaI GTTAAC 1 cut(s) 1848
HpaII CCGG 2 cut(s) 43, 80
HphI GGTGA 4 cut(s) 179, 893, 1133, 2119
Hpy166II GTNNAC 4 cut(s) 688, 1336, 1848, 2110
Hpy8I GTNNAC 4 cut(s) 688, 1336, 1848, 2110
Hpy99I CGWCG 2 cut(s) 149, 312
HpyAV CCTTC 4 cut(s) 188, 557, 618, 1507
HpyCH4III ACNGT 8 cut(s) 424, 656, 692, 889, 926, 1107, 1333, 1960
HpyCH4IV ACGT 1 cut(s) 1918
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 318, 723, 2042
HpyF3I CTNAG 7 cut(s) 183, 579, 1251, 1307, 1463, 1593, 2202
HpySE526I ACGT 1 cut(s) 1918
Hsp92I GRCGYC 2 cut(s) 144, 327
HspAI GCGC 5 cut(s) 319, 327, 388, 412, 1372
KasI GGCGCC 1 cut(s) 326
KflI GGGWCCC 2 cut(s) 617, 1357
KpnI GGTACC 1 cut(s) 925
Ksp22I TGATCA 1 cut(s) 532
KspAI GTTAAC 1 cut(s) 1848
KspI CCGCGG 1 cut(s) 419
LmnI GCTCC 5 cut(s) 305, 317, 723, 1633, 2006
Lsp1109I GCAGC 5 cut(s) 229, 617, 979, 1911, 2044
LweI GCATC 6 cut(s) 428, 453, 735, 1022, 1670, 2032
MaeI CTAG 5 cut(s) 126, 429, 1637, 1923, 1946
MaeII ACGT 1 cut(s) 1918
MaeIII GTNAC 4 cut(s) 424, 889, 1139, 1834
MfeI CAATTG 1 cut(s) 2327
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 2190
MluNI TGGCCA 1 cut(s) 2190
Mly113I GGCGCC 1 cut(s) 327
MlyI GAGTC 6 cut(s) 239, 1013, 1262, 1280, 1474, 1510
MmeI TCCRAC 1 cut(s) 652
Mox20I TGGCCA 1 cut(s) 2190
MroXI GAANNNNTTC 1 cut(s) 1323
MscI TGGCCA 1 cut(s) 2190
MslI CAYNNNNRTG 2 cut(s) 513, 1236
Msp20I TGGCCA 1 cut(s) 2190
MspA1I CMGCKG 2 cut(s) 418, 608
MspI CCGG 2 cut(s) 43, 80
MspR9I CCNGG 5 cut(s) 44, 80, 316, 1178, 2039
MunI CAATTG 1 cut(s) 2327
Mva1269I GAATGC 1 cut(s) 1453
MvaI CCWGG 3 cut(s) 316, 1178, 2039
MvnI CGCG 3 cut(s) 321, 418, 1374
MwoI GCNNNNNNNGC 4 cut(s) 248, 318, 723, 2042
NarI GGCGCC 1 cut(s) 327
NciI CCSGG 2 cut(s) 44, 80
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 2 cut(s) 265, 2239
NlaIV GGNNCC 7 cut(s) 328, 525, 618, 619, 923, 1358, 1359
NmuCI GTSAC 2 cut(s) 1139, 1834
NspI RCATGY 1 cut(s) 1817
PagI TCATGA 3 cut(s) 514, 1315, 2173
PceI AGGCCT 1 cut(s) 1988
PciI ACATGT 1 cut(s) 1813
PctI GAATGC 1 cut(s) 1453
PdmI GAANNNNTTC 1 cut(s) 1323
PfeI GAWTC 5 cut(s) 470, 1094, 1146, 1459, 1949
PflFI GACNNNGTC 1 cut(s) 1252
PkrI GCNGC 6 cut(s) 244, 607, 969, 1061, 1901, 2059
PleI GAGTC 6 cut(s) 238, 1012, 1261, 1279, 1473, 1509
PluTI GGCGCC 1 cut(s) 330
PpsI GAGTC 6 cut(s) 238, 1012, 1261, 1279, 1473, 1509
PpuMI RGGWCCY 2 cut(s) 617, 1357
PscI ACATGT 1 cut(s) 1813
Psp1406I AACGTT 1 cut(s) 1918
Psp5II RGGWCCY 2 cut(s) 617, 1357
Psp6I CCWGG 3 cut(s) 314, 1176, 2037
PspGI CCWGG 3 cut(s) 314, 1176, 2037
PspN4I GGNNCC 7 cut(s) 328, 525, 618, 619, 923, 1358, 1359
PspPI GGNCC 6 cut(s) 199, 572, 617, 1357, 1720, 2151
PspPPI RGGWCCY 2 cut(s) 617, 1357
PsrI GAACNNNNNNTAC 2 cut(s) 857, 889
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 1252
PvuII CAGCTG 1 cut(s) 608
RsaI GTAC 2 cut(s) 289, 923
RsaNI GTAC 2 cut(s) 288, 922
RseI CAYNNNNRTG 2 cut(s) 513, 1236
SacII CCGCGG 1 cut(s) 419
SalI GTCGAC 1 cut(s) 686
SatI GCNGC 6 cut(s) 243, 606, 968, 1060, 1900, 2058
Sau96I GGNCC 6 cut(s) 199, 572, 617, 1357, 1720, 2151
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 6 cut(s) 239, 1013, 1262, 1280, 1474, 1510
ScrFI CCNGG 5 cut(s) 44, 80, 316, 1178, 2039
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 6 cut(s) 428, 453, 735, 1022, 1670, 2032
SfcI CTRYAG 2 cut(s) 691, 907
SfoI GGCGCC 1 cut(s) 328
Sfr303I CCGCGG 1 cut(s) 419
SgrBI CCGCGG 1 cut(s) 419
SinI GGWCC 5 cut(s) 199, 572, 617, 1357, 1720
SmiMI CAYNNNNRTG 2 cut(s) 513, 1236
SseBI AGGCCT 1 cut(s) 1988
SsiI CCGC 4 cut(s) 271, 416, 418, 1060
SspDI GGCGCC 1 cut(s) 326
SspI AATATT 1 cut(s) 1614
SspMI CTAG 5 cut(s) 126, 429, 1637, 1923, 1946
StuI AGGCCT 1 cut(s) 1988
StyD4I CCNGG 5 cut(s) 42, 78, 314, 1176, 2037
StyI CCWWGG 4 cut(s) 246, 393, 825, 1665
TaaI ACNGT 8 cut(s) 424, 656, 692, 889, 926, 1107, 1333, 1960
TaiI ACGT 1 cut(s) 1921
TaqI TCGA 7 cut(s) 24, 66, 84, 687, 914, 1831, 2260
TaqII GACCGA 1 cut(s) 540
TatI WGTACW 1 cut(s) 287
TauI GCSGC 1 cut(s) 1062
TfiI GAWTC 5 cut(s) 470, 1094, 1146, 1459, 1949
TscAI CASTG 5 cut(s) 127, 139, 645, 1090, 1358
TseFI GTSAC 2 cut(s) 1139, 1834
TseI GCWGC 5 cut(s) 242, 605, 967, 1899, 2057
Tsp45I GTSAC 2 cut(s) 1139, 1834
TspDTI ATGAA 7 cut(s) 105, 252, 1220, 1332, 1436, 1556, 2378
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 5 cut(s) 127, 139, 645, 1090, 1358
Tth111I GACNNNGTC 1 cut(s) 1252
VpaK11BI GGWCC 5 cut(s) 199, 572, 617, 1357, 1720
XagI CCTNNNNNAGG 2 cut(s) 182, 945
XapI RAATTY 7 cut(s) 20, 171, 373, 1265, 1994, 2194, 2223
XbaI TCTAGA 1 cut(s) 1945
XceI RCATGY 1 cut(s) 1817
XmiI GTMKAC 2 cut(s) 687, 1335
XmnI GAANNNNTTC 1 cut(s) 1323
XspI CTAG 5 cut(s) 126, 429, 1637, 1923, 1946
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.