Rmu_sc0002564.1_g000015

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002564.1
OG0000165
Physical Location & Seq
Reverse (-)
70403 .. 72675
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002564.1_g000015.1.cds

Sequence Viewer

Length: 1164 bp
atgattgtgaatcgtcaagctagtaataatgacaacttgtatggagtaattgtcaatagtgaggaagaagcatacaacctctactgtgagtatggtgctagaatggggtttagtgttcggataatgcagaggaggaaaaccaacaactttgtgagacaagttaattatgtctgttcaaaagaaggttttaaactagatagtgatccttcagaagtgaaaaaggtttataggttggacactagaactggctgcatagcaaaaattcgatttagattgcaagataataatgtatggaaagcaactctctttgttcctgaacacaaccacaagcttgcagagccagaagaaagaccatttttgcgctccaatcgaaaagtgttagaagctcataagggggtgattagatcaatgaaaagcccaggtatgactaccataaatacatattcatatttagcagaagaagttgggggatctcaaaatgttggatttacaaagactgattgttacaattttgagagcagagagaaaatgattatgctagaagcaggggatgctcaaagcttgatcaatttattcaagaaaaagcaaattgaagatcctatgtttttctacaccgtgcaagtggatcaagaaaatcgaatgacaaactttttttggagagatggaaagtcgaaaaccgactttgaatgctttggggacgttatagtatttgatactacttaccggaccaacaaatataacatgatttgtgctcccttcgttggggctaaccaccattggaaaaatgtgttgtttggttgtgcatttttgctagatgagacgactgcttcatttatttggttatttgagacattcttagaagcgatggaaggtaaaaaaccgaagactatttttactgatcgatgtcaggcaatggcaaatgctattgagaaggtttttcctgagacacgccatcgcacctcagcaaacgcacctcccaactctgaagcacttccttcacagaagctcgaaatcattgtcttcatcatcctccgatgcctcgctcagcttgcctctgcgattgctagtccatctccatctcctcgcgcctctcgctttcgtccttgtcctcgggggacgagcacgacgacctgcccaggatctccctcgattcggacaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

387

Amino Acids

44.3

Weight (kDa)

9.01

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1139
AccII CGCG 1 cut(s) 1086
AclWI GGATC 5 cut(s) 197, 478, 590, 633, 1147
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 2 cut(s) 192, 1005
AfiI CCNNNNNNNGG 3 cut(s) 761, 762, 1152
AgsI TTSAA 4 cut(s) 177, 577, 593, 686
AjnI CCWGG 2 cut(s) 418, 1135
AluBI AGCT 6 cut(s) 20, 331, 386, 561, 1006, 1048
AluI AGCT 6 cut(s) 20, 331, 386, 561, 1006, 1048
Alw21I GWGCWC 2 cut(s) 754, 1124
Alw26I GTCTC 4 cut(s) 148, 812, 842, 938
AlwI GGATC 5 cut(s) 197, 478, 590, 633, 1147
Ama87I CYCGRG 1 cut(s) 1110
ApeKI GCWGC 1 cut(s) 249
ApoI RAATTY 1 cut(s) 261
ArsI GACNNNNNNTTYG 2 cut(s) 1002, 1034
Asp700I GAANNNNTTC 1 cut(s) 990
AspLEI GCGC 2 cut(s) 363, 1088
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 1 cut(s) 726
BbsI GAAGAC 2 cut(s) 890, 1012
Bbv12I GWGCWC 2 cut(s) 754, 1124
BbvCI CCTCAGC 1 cut(s) 961
BbvI GCAGC 1 cut(s) 236
BccI CCATC 5 cut(s) 656, 859, 960, 1078, 1084
BciT130I CCWGG 2 cut(s) 420, 1137
BclI TGATCA 1 cut(s) 564
BcoDI GTCTC 4 cut(s) 148, 812, 842, 938
BfaI CTAG 7 cut(s) 21, 99, 194, 240, 539, 812, 1065
BfuAI ACCTGC 1 cut(s) 1139
BisI GCNGC 1 cut(s) 250
BlpI GCTNAGC 1 cut(s) 1044
BlsI GCNGC 1 cut(s) 251
Bme1390I CCNGG 2 cut(s) 420, 1137
Bme18I GGWCC 1 cut(s) 726
BmeT110I CYCGRG 1 cut(s) 1110
BmgT120I GGNCC 1 cut(s) 726
BmrFI CCNGG 2 cut(s) 420, 1137
BmsI GCATC 2 cut(s) 541, 1025
BpiI GAAGAC 2 cut(s) 890, 1012
Bpu10I CCTNAGC 1 cut(s) 961
Bpu1102I GCTNAGC 1 cut(s) 1044
Bsa29I ATCGAT 1 cut(s) 901
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 3 cut(s) 418, 1109, 1135
BsaWI WCCGGW 1 cut(s) 723
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 3 cut(s) 761, 762, 1152
Bse1I ACTGG 1 cut(s) 250
Bse3DI GCAATG 1 cut(s) 918
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 420, 1137
BseCI ATCGAT 1 cut(s) 901
BseDI CCNNGG 3 cut(s) 418, 1109, 1135
BseGI GGATG 2 cut(s) 556, 1026
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 761, 762, 1152
BseMI GCAATG 1 cut(s) 918
BseMII CTCAG 3 cut(s) 933, 975, 1058
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 2 cut(s) 145, 1071
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 1086
BshVI ATCGAT 1 cut(s) 901
BsiHKAI GWGCWC 2 cut(s) 754, 1124
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 1 cut(s) 724
BslFI GGGAC 2 cut(s) 710, 1129
BslI CCNNNNNNNGG 3 cut(s) 761, 762, 1152
BsmAI GTCTC 4 cut(s) 148, 812, 842, 938
BsmBI CGTCTC 1 cut(s) 812
BsmFI GGGAC 2 cut(s) 710, 1129
BsmI GAATGC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 2 cut(s) 754, 1124
Bsp143I GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
Bsp1720I GCTNAGC 1 cut(s) 1044
BspCNI CTCAG 3 cut(s) 934, 974, 1057
BspDI ATCGAT 1 cut(s) 901
BspFNI CGCG 1 cut(s) 1086
BspMI ACCTGC 1 cut(s) 1139
BspPI GGATC 5 cut(s) 197, 478, 590, 633, 1147
BsrDI GCAATG 1 cut(s) 918
BsrI ACTGG 1 cut(s) 250
BssECI CCNNGG 3 cut(s) 418, 1109, 1135
BssMI GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
Bst2UI CCWGG 2 cut(s) 420, 1137
Bst4CI ACNGT 2 cut(s) 86, 616
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 2 cut(s) 333, 1050
BstDEI CTNAG 4 cut(s) 856, 942, 961, 1044
BstF5I GGATG 2 cut(s) 556, 1026
BstFNI CGCG 1 cut(s) 1086
BstHHI GCGC 2 cut(s) 363, 1088
BstKTI GATC 8 cut(s) 205, 407, 473, 567, 598, 628, 901, 1142
BstMAI GTCTC 4 cut(s) 148, 812, 842, 938
BstMBI GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
BstMWI GCNNNNNNNGC 4 cut(s) 337, 551, 1049, 1092
BstNI CCWGG 2 cut(s) 420, 1137
BstSCI CCNGG 2 cut(s) 418, 1135
BstUI CGCG 1 cut(s) 1086
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 2 cut(s) 890, 1012
BstX2I RGATCY 3 cut(s) 470, 595, 1139
BstYI RGATCY 3 cut(s) 470, 595, 1139
Bsu15I ATCGAT 1 cut(s) 901
BsuTUI ATCGAT 1 cut(s) 901
BtgZI GCGATG 2 cut(s) 878, 938
BtsCI GGATG 2 cut(s) 556, 1026
BveI ACCTGC 1 cut(s) 1139
Cac8I GCNNGC 2 cut(s) 333, 1050
CfoI GCGC 2 cut(s) 363, 1088
Cfr13I GGNCC 1 cut(s) 726
ClaI ATCGAT 1 cut(s) 901
CviAII CATG 1 cut(s) 742
DdeI CTNAG 4 cut(s) 856, 942, 961, 1044
DpnI GATC 8 cut(s) 204, 406, 472, 566, 597, 627, 900, 1141
DpnII GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
DraI TTTAAA 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 726
Eco57I CTGAAG 2 cut(s) 192, 1005
Eco88I CYCGRG 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 418, 1135
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 1 cut(s) 745
FaqI GGGAC 2 cut(s) 710, 1129
FatI CATG 1 cut(s) 741
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 1 cut(s) 250
FokI GGATG 2 cut(s) 563, 1013
Fsp4HI GCNGC 1 cut(s) 250
FspBI CTAG 7 cut(s) 21, 99, 194, 240, 539, 812, 1065
GlaI GCGC 2 cut(s) 362, 1087
GluI GCNGC 1 cut(s) 250
HapII CCGG 1 cut(s) 724
HhaI GCGC 2 cut(s) 363, 1088
Hin1II CATG 1 cut(s) 745
Hin6I GCGC 2 cut(s) 361, 1086
HinP1I GCGC 2 cut(s) 361, 1086
HindIII AAGCTT 2 cut(s) 329, 559
HinfI GANTC 2 cut(s) 10, 1150
HpaII CCGG 1 cut(s) 724
HphI GGTGA 1 cut(s) 409
Hpy188I TCNGA 5 cut(s) 120, 211, 985, 1034, 1155
Hpy188III TCNNGA 4 cut(s) 314, 577, 629, 941
Hpy99I CGWCG 1 cut(s) 1129
HpyAV CCTTC 6 cut(s) 176, 216, 766, 863, 925, 1005
HpyCH4III ACNGT 2 cut(s) 86, 616
HpyCH4IV ACGT 1 cut(s) 699
HpyCH4V TGCA 6 cut(s) 127, 252, 277, 335, 619, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 551, 1049, 1092
HpyF3I CTNAG 4 cut(s) 856, 942, 961, 1044
HpySE526I ACGT 1 cut(s) 699
Hsp92II CATG 1 cut(s) 745
HspAI GCGC 2 cut(s) 361, 1086
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
LmnI GCTCC 2 cut(s) 368, 757
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 2 cut(s) 541, 1025
MaeI CTAG 7 cut(s) 21, 99, 194, 240, 539, 812, 1065
MaeII ACGT 1 cut(s) 699
MaeIII GTNAC 1 cut(s) 503
MalI GATC 8 cut(s) 204, 406, 472, 566, 597, 627, 900, 1141
MboI GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
MboII GAAGA 6 cut(s) 77, 356, 470, 605, 895, 1012
MflI RGATCY 3 cut(s) 470, 595, 1139
MhlI GDGCHC 2 cut(s) 754, 1124
MluCI AATT 7 cut(s) 48, 163, 261, 508, 568, 588, 1159
MmeI TCCRAC 2 cut(s) 213, 463
MroXI GAANNNNTTC 1 cut(s) 990
MseI TTAA 2 cut(s) 162, 189
MspI CCGG 1 cut(s) 724
MspR9I CCNGG 2 cut(s) 420, 1137
Mva1269I GAATGC 1 cut(s) 692
MvaI CCWGG 2 cut(s) 420, 1137
MvnI CGCG 1 cut(s) 1086
MwoI GCNNNNNNNGC 4 cut(s) 337, 551, 1049, 1092
NdeII GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
NlaIII CATG 1 cut(s) 745
PcsI WCGNNNNNNNCGW 1 cut(s) 1124
PctI GAATGC 1 cut(s) 692
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 2 cut(s) 10, 1150
PkrI GCNGC 1 cut(s) 251
Psp6I CCWGG 2 cut(s) 418, 1135
PspGI CCWGG 2 cut(s) 418, 1135
PspPI GGNCC 1 cut(s) 726
PsuI RGATCY 3 cut(s) 470, 595, 1139
SaqAI TTAA 2 cut(s) 162, 189
SatI GCNGC 1 cut(s) 250
Sau3AI GATC 8 cut(s) 202, 404, 470, 564, 595, 625, 898, 1139
Sau96I GGNCC 1 cut(s) 726
ScrFI CCNGG 2 cut(s) 420, 1137
SduI GDGCHC 2 cut(s) 754, 1124
SfaNI GCATC 2 cut(s) 541, 1025
SinI GGWCC 1 cut(s) 726
Sse9I AATT 7 cut(s) 48, 163, 261, 508, 568, 588, 1159
SspMI CTAG 7 cut(s) 21, 99, 194, 240, 539, 812, 1065
StyD4I CCNGG 2 cut(s) 418, 1135
TaaI ACNGT 2 cut(s) 86, 616
TaiI ACGT 1 cut(s) 702
TaqI TCGA 7 cut(s) 265, 370, 637, 671, 901, 1008, 1148
TasI AATT 7 cut(s) 48, 163, 261, 508, 568, 588, 1159
TfiI GAWTC 2 cut(s) 10, 1150
Tru1I TTAA 2 cut(s) 162, 189
Tru9I TTAA 2 cut(s) 162, 189
TseI GCWGC 1 cut(s) 249
TspDTI ATGAA 4 cut(s) 425, 435, 819, 1012
VpaK11BI GGWCC 1 cut(s) 726
XapI RAATTY 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 7 cut(s) 21, 99, 194, 240, 539, 812, 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.