RLG00000014615

cyclic nucleotide-gated ion channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000165
Physical Location & Seq
Forward (+)
55486479 .. 55487354
876 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014615

Sequence Viewer

Length: 579 bp
ATGGTTAGCAATAATACATGTGGAGCAACAAGTGAGAATTCAAAGTCTGCTAGAGTGTTGCACCTTAGCGAATTGATGCATGAAGGAAATAGTATGTATGACAGAGCCTCACTGACCGGTTCAGGTACTGAAATTGTCAAGGATCTGTTAAAAGAGGCAATGAAGCGCCTTGAAAAAGATAAGGACACTATCTACATGTTGGAAAATTTGAAGAAACTTGGTGACCAATCTGACTCTGGCATTCCTAGTAATGAGATTCTAGTTTTGAATCCACCAAGTGCAAAGACTAAAGGAATGAAAAATGCTAGAATCAAAGACGTGAGGGAGATAAACCAACGGAAGAAGAGAACAAAAGCTCCAAATCATGTGTCTACATCTAATCATCAGTTTGGTGTACTTAACACCTCATTTTATAATCAGGGAATTTTAAGTTGGCCTTTTGGACATCCCAATCCATGTTTTAGCTATGGTCAGATACCTTTCTCAAACCAGAATTCAACTTACTCAACTACAAGTCTGAATCTTGCACCAGCTACAACTCTAAGTACAAATTCTACACTCAGACAACAACCTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans

Protein Analysis

193

Amino Acids

21.28

Weight (kDa)

9.46

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AccI GTMKAC 1 cut(s) 371
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 5 cut(s) 37, 205, 423, 493, 550
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 3 cut(s) 127, 396, 547
AflIII ACRYGT 2 cut(s) 17, 195
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 5 cut(s) 42, 173, 211, 268, 498
AjiI CACGTC 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AloI GAACNNNNNNTCC 2 cut(s) 340, 372
AluBI AGCT 3 cut(s) 356, 465, 533
AluI AGCT 3 cut(s) 356, 465, 533
AlwI GGATC 1 cut(s) 150
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 434
ApoI RAATTY 5 cut(s) 37, 205, 423, 493, 550
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AsiGI ACCGGT 1 cut(s) 116
AspLEI GCGC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 233
BfaI CTAG 4 cut(s) 51, 246, 260, 306
BfoI RGCGCY 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 319
BmsI GCATC 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 1 cut(s) 445
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 574
BshFI GGCC 1 cut(s) 436
BshTI ACCGGT 1 cut(s) 116
BsiSI CCGG 1 cut(s) 117
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 436
Bsp143I GATC 1 cut(s) 142
BspANI GGCC 1 cut(s) 436
BspCNI CTCAG 1 cut(s) 573
BspPI GGATC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssMI GATC 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 338
BstDEI CTNAG 4 cut(s) 65, 542, 560, 573
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstNSI RCATGY 2 cut(s) 21, 199
BstPI GGTNACC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 436
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 110
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 116
Csp6I GTAC 3 cut(s) 126, 395, 546
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 5 cut(s) 18, 80, 196, 365, 456
CviJI RGCY 5 cut(s) 107, 356, 436, 465, 533
CviKI_1 RGCY 5 cut(s) 107, 356, 436, 465, 533
CviQI GTAC 3 cut(s) 126, 395, 546
DdeI CTNAG 4 cut(s) 65, 542, 560, 573
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRI GAATTC 2 cut(s) 37, 493
EcoT22I ATGCAT 1 cut(s) 81
FaeI CATG 5 cut(s) 21, 83, 199, 368, 459
FaiI YATR 9 cut(s) 19, 81, 95, 99, 197, 366, 414, 457, 468
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FatI CATG 5 cut(s) 17, 79, 195, 364, 455
FblI GTMKAC 1 cut(s) 371
FokI GGATG 1 cut(s) 432
FspBI CTAG 4 cut(s) 51, 246, 260, 306
GlaI GCGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 1 cut(s) 436
HapII CCGG 1 cut(s) 117
HhaI GCGC 1 cut(s) 168
Hin1II CATG 5 cut(s) 21, 83, 199, 368, 459
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HinfI GANTC 5 cut(s) 233, 256, 268, 309, 520
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 372, 395
Hpy188I TCNGA 4 cut(s) 232, 474, 519, 563
Hpy8I GTNNAC 2 cut(s) 372, 395
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 4 cut(s) 61, 79, 281, 527
HpyF3I CTNAG 4 cut(s) 65, 542, 560, 573
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 5 cut(s) 21, 83, 199, 368, 459
HspAI GCGC 1 cut(s) 166
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 23, 361
LpnPI CCDG 6 cut(s) 108, 130, 222, 404, 503, 543
LweI GCATC 1 cut(s) 66
MaeI CTAG 4 cut(s) 51, 246, 260, 306
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 221
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 223, 352, 355
MflI RGATCY 1 cut(s) 142
MluCI AATT 7 cut(s) 37, 71, 132, 205, 423, 493, 550
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 118, 148, 315, 415
Mph1103I ATGCAT 1 cut(s) 81
MseI TTAA 3 cut(s) 149, 399, 428
MspI CCGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 240
NdeII GATC 1 cut(s) 142
NlaIII CATG 5 cut(s) 21, 83, 199, 368, 459
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 81
NspI RCATGY 2 cut(s) 21, 199
PciI ACATGT 2 cut(s) 17, 195
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 4 cut(s) 256, 268, 309, 520
PinAI ACCGGT 1 cut(s) 116
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
PscI ACATGT 2 cut(s) 17, 195
PsiI TTATAA 1 cut(s) 414
PspEI GGTNACC 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 3 cut(s) 127, 396, 547
RsaNI GTAC 3 cut(s) 126, 395, 546
SaqAI TTAA 3 cut(s) 149, 399, 428
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 1 cut(s) 227
SetI ASST 9 cut(s) 66, 127, 321, 358, 407, 467, 481, 535, 574
SfaNI GCATC 1 cut(s) 66
Sse9I AATT 7 cut(s) 37, 71, 132, 205, 423, 493, 550
SspMI CTAG 4 cut(s) 51, 246, 260, 306
TaiI ACGT 1 cut(s) 321
TasI AATT 7 cut(s) 37, 71, 132, 205, 423, 493, 550
TatI WGTACW 2 cut(s) 394, 545
TfiI GAWTC 4 cut(s) 256, 268, 309, 520
Tru1I TTAA 3 cut(s) 149, 399, 428
Tru9I TTAA 3 cut(s) 149, 399, 428
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 96, 176, 311
TspGWI ACGGA 1 cut(s) 352
TspRI CASTG 1 cut(s) 117
XapI RAATTY 5 cut(s) 37, 205, 423, 493, 550
XceI RCATGY 2 cut(s) 21, 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 4 cut(s) 51, 246, 260, 306
Zsp2I ATGCAT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.