FvH4_5g26361

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000165
Physical Location & Seq
Reverse (-)
17873477 .. 17877169
3693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26361.t4

Sequence Viewer

Length: 2298 bp
ATGGACTATAAGCCTCTGACCATTGGCAACGATGTGGTGGAATTTGACCTGGGTGGTTCTGGGGAAGATGACGCTATTGCCCTCGACTTAGAACACCCTGATGATGCTTATGATCTTTTCGAAGAAGACGATTTGGTCCAGCTTGGTTCTCGTTCCACTAGGTTTGGTGATGATTTGGGTAATGGGGACCCCAATCTTGAGCCTTGTGAGGGCATGGAATTCGATTCGGAACAGGCCTCTCGCATTTTCTACAATTCTTATGCTAGGAGAGTTGGTTTTAGTACCAGGGTCAGTGTGTACCAGAGGTCGCGGCGTGATGGCTCCATCATATGCCGGCAGATTGTGTGTTCCCGGGAAGGGTTTCGGCGTGATGGAGGTGAAAATAGGTCCAAGAGGCAGCGTACAGTCACTAGAGTCGGTTGCAAGGCGCAGATGACTGTGAAGAAGCAGAGTTCAGGGAGATGGGCTGTTTCGAAACTAGTGAAGGAGCATAACCATGAGCTTGTGCCGCCGGATAAGGTGCATTGTCTCCGTTCGCATAGGCATGTGTCTGGTCCTGCTCGGAGTCTGATTGATACTCTTCAAGCAGCTGGGATGGGTCCCAGCGGGGTAATGTCCGTGCTGATAAAGGAATCAGGGGGAGTTAATAATGTTGGTTTTACGAAAGTTGATTGCCAGAATTACATGAGCAGTAGCAGGCAGAGGACTCTTGGGAGTGGGGGTCAGCTTGTTTTTGACTATTTGAAGCGAATGCAGGATGAGGATCCTGGTTTCTTTTGTGCTGTTCAGGGTGATTTTGAGAACTCAACAGGTAACATATTTTGGGCTGATTCAAATTCAAGAATGAACTATAGTTACTTTGGAGACACTGTTACATTTGATACCACGTATAGAACAAATCGATACCGGGTTCCATTTGCTCCATTTACTGGGTGGAATCATCATGGACAGCCAGTGTTGTTTGGATGTGCATTACTCCTTAATGAGTCAGAGTCCTCGTTTGTTTGGCTGTTCCAGACTTGGTTAGCTGCTATGTCTGGCTGCCAACCTGTCTCAATCACAACAGACCAGGATAGAATCATTAGGGCTGCTGTGATGCAAGTATTTCCTGGAACCTGCCACCGCTTTTGTAAATGGAACGTGTTCAGGGAAGCTCAGGAGAAATTGTCCCACATTTATCAATCACACCCAACCTTTGAAGCCGAGTTCTTGAGGTGCATTAATTTGACAGAGACAATTGATGAATTTGAGATATGTTGGGAGTCGCTTATTAAAAGGTATGATCTTGATAGTAATGAATGGCTTCAGTCAATGTACTATGCTCGCCAGCAATGGGTGCCAGTTTTCCTTCGTGATACATTTTTTGGGGAGTTGTTTGTAACCCAAGGAAGTGATAATATAAACTCATACTTTGATGGCTATATAAATGCATCAACAAATATTCAGGTGCTGATAAAGCAGTATGAAAAAGCAATTGCTACTCGCCATGAAAAGGAAGTAAAGGCTGATTATGATACATTGAACATCTCTCCAGTTCTAAGGACTCCGTCTCCTATGGAAAAGCAAACTGCAAAACTGTATACGAGGATAATATTCATGAAGTTCCAAGAAGAATTGGTCGAAACGCTTGCTTATCCGGCAACTGTGGTTGATGACACAGGATCAGAAACCATGTTTCGGGTTGCGAAATTTGGGGAAGACCACAAAGGGCATTTTGTTAAGTTCAATGTTTTTGAGAAGAAAGCTAGTTGTAGCTGCCAAATGTTTGAGTTTTCAGGTATTATTTGCAGGCACATATTAGCAGTTTTCAGAGTAACCAATGTTCTTACACTTCCGTCCCACTATATATTGAAACGTTGGACTAGAAATGCCAAAAGTGGAGTTCTGTTGGATGCACATGCTCTTGGATTGCCAAAGGATTCACATGATTCTTCTGCTGCTCGGTATGACAATCTAAGAAGGGAGGTGACCAAATATGTAGAAGAAGGGGCAGAATCTGAGCGTGTTTATAATGTGGCAATGGACGCTCTTCATGAAGCTTTAAACAAGGTTGCTGCTGCAAAGAAGCATGGTCCCGGAGTTGTACAAAGTACTCCAGTGAAATGCAGTGAGCAGGTTCTGTCTTGTACCATGGATCAGGACAAGAAAATTGAGGAATTGACAGCTGAGTTGGAAATTGCTAGTCAGCGATGTGAAGCGTATCAAGCAAAACTACTTGCTATTTTGAAGGATATGGAAGAGCAGAAGTTAAAAATATCAGTGAATGTTCAGAATGTAAGGCTAAATCTCAAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

766

Amino Acids

87.02

Weight (kDa)

6.1

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 83 - 170 5.7e-31 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 252 - 371 4.1e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 291 - 382 5.9e-28 MULE transposase domain
SWIM PF04434 581 - 604 5.8e-10 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2010
AasI GACNNNNNNGTC 1 cut(s) 134
Acc36I ACCTGC 2 cut(s) 1124, 2104
AccB1I GGYRCC 1 cut(s) 1336
AccB7I CCANNNNNTGG 1 cut(s) 929
AccI GTMKAC 1 cut(s) 1580
AccII CGCG 1 cut(s) 310
AciI CCGC 4 cut(s) 310, 509, 606, 1123
AclI AACGTT 1 cut(s) 1855
AclWI GGATC 4 cut(s) 758, 771, 1669, 2142
AcsI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
AcuI CTGAAG 1 cut(s) 1289
AfaI GTAC 7 cut(s) 283, 299, 403, 1316, 2085, 2092, 2128
AfiI CCNNNNNNNGG 6 cut(s) 209, 357, 929, 1333, 1492, 1677
AflIII ACRYGT 1 cut(s) 1140
AgsI TTSAA 9 cut(s) 584, 745, 834, 840, 1199, 1522, 1726, 1852, 2227
AhlI ACTAGT 1 cut(s) 478
AjnI CCWGG 5 cut(s) 48, 284, 766, 1068, 1108
Alw26I GTCTC 5 cut(s) 533, 858, 1057, 1226, 1554
AlwI GGATC 4 cut(s) 758, 771, 1669, 2142
AlwNI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
Ama87I CYCGRG 1 cut(s) 351
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 9 cut(s) 397, 587, 1028, 1041, 1088, 1755, 1937, 2054, 2057
ApoI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
AseI ATTAAT 1 cut(s) 1221
Asp700I GAANNNNTTC 3 cut(s) 360, 1142, 1302
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 6 cut(s) 136, 187, 387, 554, 599, 2072
AsuC2I CCSGG 4 cut(s) 352, 353, 908, 2076
AsuHPI GGTGA 4 cut(s) 179, 389, 803, 1978
AsuII TTCGAA 2 cut(s) 120, 473
AvaI CYCGRG 1 cut(s) 351
AvaII GGWCC 6 cut(s) 136, 187, 387, 554, 599, 2072
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 1336
BbsI GAAGAC 2 cut(s) 132, 1704
BbvI GCAGC 9 cut(s) 409, 599, 1015, 1028, 1075, 1742, 1924, 2041, 2044
BccI CCATC 6 cut(s) 311, 332, 365, 456, 589, 1409
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 1610, 1644
BciT130I CCWGG 5 cut(s) 50, 286, 768, 1070, 1110
BcnI CCSGG 4 cut(s) 352, 353, 908, 2076
BcoDI GTCTC 5 cut(s) 533, 858, 1057, 1226, 1554
BcuI ACTAGT 1 cut(s) 478
BfaI CTAG 7 cut(s) 159, 264, 411, 479, 1746, 1863, 2181
BfmI CTRYAG 1 cut(s) 850
BfuAI ACCTGC 2 cut(s) 1124, 2104
BmcAI AGTACT 1 cut(s) 2092
Bme1390I CCNGG 9 cut(s) 50, 286, 352, 353, 768, 908, 1070, 1110, 2076
Bme18I GGWCC 6 cut(s) 136, 187, 387, 554, 599, 2072
BmeT110I CYCGRG 1 cut(s) 351
BmgT120I GGNCC 6 cut(s) 136, 187, 387, 554, 599, 2072
BmrFI CCNGG 9 cut(s) 50, 286, 352, 353, 768, 908, 1070, 1110, 2076
BmrI ACTGGG 1 cut(s) 939
BmsI GCATC 4 cut(s) 94, 1086, 1439, 1882
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 2 cut(s) 132, 1704
BpmI CTGGAG 2 cut(s) 1515, 2079
Bpu10I CCTNAGC 1 cut(s) 1155
Bpu14I TTCGAA 2 cut(s) 120, 473
BpuEI CTTGAG 2 cut(s) 218, 1231
BpuMI CCSGG 4 cut(s) 352, 353, 908, 2076
Bsa29I ATCGAT 1 cut(s) 901
BsaAI YACGTR 1 cut(s) 888
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 5 cut(s) 49, 285, 351, 1384, 2130
Bsc4I CCNNNNNNNGG 6 cut(s) 209, 357, 929, 1333, 1492, 1677
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 5 cut(s) 934, 953, 1340, 1532, 2096
Bse3DI GCAATG 2 cut(s) 1337, 2025
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 5 cut(s) 50, 286, 768, 1070, 1110
BseCI ATCGAT 1 cut(s) 901
BseDI CCNNGG 5 cut(s) 49, 285, 351, 1384, 2130
BseGI GGATG 4 cut(s) 600, 763, 971, 1897
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 6 cut(s) 209, 357, 929, 1333, 1492, 1677
BseMI GCAATG 2 cut(s) 1337, 2025
BseMII CTCAG 3 cut(s) 1169, 1989, 2157
BseNI ACTGG 5 cut(s) 934, 953, 1340, 1532, 2096
BseXI GCAGC 9 cut(s) 409, 599, 1015, 1028, 1075, 1742, 1924, 2041, 2044
BseYI CCCAGC 2 cut(s) 590, 602
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 1336
BshVI ATCGAT 1 cut(s) 901
BsiHKCI CYCGRG 1 cut(s) 351
BsiSI CCGG 6 cut(s) 334, 352, 512, 907, 1637, 2076
BslFI GGGAC 5 cut(s) 200, 585, 1153, 1822, 2058
BslI CCNNNNNNNGG 6 cut(s) 209, 357, 929, 1333, 1492, 1677
BsmAI GTCTC 5 cut(s) 533, 858, 1057, 1226, 1554
BsmBI CGTCTC 1 cut(s) 1554
BsmFI GGGAC 5 cut(s) 200, 585, 1153, 1822, 2058
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 351
Bsp119I TTCGAA 2 cut(s) 120, 473
Bsp1407I TGTACA 1 cut(s) 2083
Bsp143I GATC 5 cut(s) 112, 763, 1282, 1661, 2134
Bsp19I CCATGG 1 cut(s) 2130
BspACI CCGC 4 cut(s) 310, 509, 606, 1123
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 1168, 1990, 2158
BspDI ATCGAT 1 cut(s) 901
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 2 cut(s) 1596, 2032
BspMI ACCTGC 2 cut(s) 1124, 2104
BspPI GGATC 4 cut(s) 758, 771, 1669, 2142
BspQI GCTCTTC 2 cut(s) 2034, 2232
BspT104I TTCGAA 2 cut(s) 120, 473
BspT107I GGYRCC 1 cut(s) 1336
BsrDI GCAATG 2 cut(s) 1337, 2025
BsrFI RCCGGY 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 2083
BsrI ACTGG 5 cut(s) 934, 953, 1340, 1532, 2096
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 5 cut(s) 49, 285, 351, 1384, 2130
BssMI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
BssNAI GTATAC 1 cut(s) 1581
BssT1I CCWWGG 2 cut(s) 1384, 2130
Bst1107I GTATAC 1 cut(s) 1581
Bst2UI CCWGG 5 cut(s) 50, 286, 768, 1070, 1110
Bst4CI ACNGT 5 cut(s) 406, 439, 871, 1578, 1645
Bst6I CTCTTC 3 cut(s) 585, 2034, 2232
BstAPI GCANNNNNTGC 1 cut(s) 1336
BstAUI TGTACA 1 cut(s) 2083
BstBAI YACGTR 1 cut(s) 888
BstBI TTCGAA 2 cut(s) 120, 473
BstC8I GCNNGC 6 cut(s) 335, 698, 1324, 1328, 1629, 1790
BstDEI CTNAG 6 cut(s) 88, 1155, 1538, 1955, 1998, 2166
BstDSI CCRYGG 1 cut(s) 2130
BstEII GGTNACC 1 cut(s) 1966
BstF5I GGATG 4 cut(s) 600, 763, 971, 1897
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 5 cut(s) 115, 766, 1285, 1664, 2137
BstMAI GTCTC 5 cut(s) 533, 858, 1057, 1226, 1554
BstMBI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
BstMWI GCNNNNNNNGC 6 cut(s) 508, 1336, 1456, 1637, 2024, 2204
BstNI CCWGG 5 cut(s) 50, 286, 768, 1070, 1110
BstNSI RCATGY 2 cut(s) 548, 1901
BstPI GGTNACC 1 cut(s) 1966
BstSCI CCNGG 9 cut(s) 48, 284, 350, 351, 766, 906, 1068, 1108, 2074
BstSFI CTRYAG 1 cut(s) 850
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 9 cut(s) 409, 599, 1015, 1028, 1075, 1742, 1924, 2041, 2044
BstV2I GAAGAC 2 cut(s) 132, 1704
BstX2I RGATCY 1 cut(s) 763
BstYI RGATCY 1 cut(s) 763
BstZ17I GTATAC 1 cut(s) 1581
Bsu15I ATCGAT 1 cut(s) 901
BsuRI GGCC 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 2130
BtgZI GCGATG 1 cut(s) 2203
BtsCI GGATG 4 cut(s) 600, 763, 971, 1897
BtsI GCAGTG 1 cut(s) 2113
BtsIMutI CAGTG 6 cut(s) 298, 867, 960, 2103, 2113, 2265
BveI ACCTGC 2 cut(s) 1124, 2104
Cac8I GCNNGC 6 cut(s) 335, 698, 1324, 1328, 1629, 1790
CaiI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
CciI TCATGA 2 cut(s) 1596, 2032
CfoI GCGC 1 cut(s) 430
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 6 cut(s) 136, 187, 387, 554, 599, 2072
Cfr9I CCCGGG 1 cut(s) 351
ClaI ATCGAT 1 cut(s) 901
CseI GACGC 2 cut(s) 80, 2033
Csp6I GTAC 7 cut(s) 282, 298, 402, 1315, 2084, 2091, 2127
CspCI CAANNNNNGTGG 4 cut(s) 145, 180, 1109, 1144
CviQI GTAC 7 cut(s) 282, 298, 402, 1315, 2084, 2091, 2127
DdeI CTNAG 6 cut(s) 88, 1155, 1538, 1955, 1998, 2166
DpnI GATC 5 cut(s) 114, 765, 1284, 1663, 2136
DpnII GATC 5 cut(s) 112, 763, 1282, 1661, 2134
DraI TTTAAA 1 cut(s) 2043
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 585, 2034, 2232
EarI CTCTTC 3 cut(s) 585, 2034, 2232
Eco130I CCWWGG 2 cut(s) 1384, 2130
Eco147I AGGCCT 1 cut(s) 236
Eco47I GGWCC 6 cut(s) 136, 187, 387, 554, 599, 2072
Eco57I CTGAAG 1 cut(s) 1289
Eco88I CYCGRG 1 cut(s) 351
Eco91I GGTNACC 1 cut(s) 1966
EcoO109I RGGNCCY 2 cut(s) 187, 599
EcoO65I GGTNACC 1 cut(s) 1966
EcoRI GAATTC 1 cut(s) 218
EcoRII CCWGG 5 cut(s) 48, 284, 766, 1068, 1108
EcoT14I CCWWGG 2 cut(s) 1384, 2130
EcoT22I ATGCAT 1 cut(s) 1432
ErhI CCWWGG 2 cut(s) 1384, 2130
Esp3I CGTCTC 1 cut(s) 1554
FaqI GGGAC 5 cut(s) 200, 585, 1153, 1822, 2058
FauI CCCGC 1 cut(s) 599
FauNDI CATATG 1 cut(s) 329
FblI GTMKAC 1 cut(s) 1580
FokI GGATG 4 cut(s) 607, 770, 978, 1904
FspBI CTAG 7 cut(s) 159, 264, 411, 479, 1746, 1863, 2181
GlaI GCGC 1 cut(s) 429
GsaI CCCAGC 2 cut(s) 594, 606
GsuI CTGGAG 2 cut(s) 1515, 2079
HaeIII GGCC 1 cut(s) 236
HapII CCGG 6 cut(s) 334, 352, 512, 907, 1637, 2076
HgaI GACGC 2 cut(s) 80, 2033
HhaI GCGC 1 cut(s) 430
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 2037
HpaII CCGG 6 cut(s) 334, 352, 512, 907, 1637, 2076
HphI GGTGA 4 cut(s) 179, 389, 803, 1978
Hpy166II GTNNAC 2 cut(s) 298, 1581
Hpy188I TCNGA 9 cut(s) 18, 229, 564, 570, 991, 1666, 1811, 1999, 2271
Hpy8I GTNNAC 2 cut(s) 298, 1581
HpyAV CCTTC 6 cut(s) 350, 478, 1358, 1953, 1979, 2221
HpyCH4III ACNGT 5 cut(s) 406, 439, 871, 1578, 1645
HpyCH4IV ACGT 3 cut(s) 887, 1140, 1855
HpyF10VI GCNNNNNNNGC 6 cut(s) 508, 1336, 1456, 1637, 2024, 2204
HpyF3I CTNAG 6 cut(s) 88, 1155, 1538, 1955, 1998, 2166
HpySE526I ACGT 3 cut(s) 887, 1140, 1855
HspAI GCGC 1 cut(s) 428
KflI GGGWCCC 2 cut(s) 187, 599
KroI GCCGGC 1 cut(s) 333
KroNI GCCGGC 1 cut(s) 335
Kzo9I GATC 5 cut(s) 112, 763, 1282, 1661, 2134
LguI GCTCTTC 2 cut(s) 2034, 2232
LmnI GCTCC 3 cut(s) 326, 487, 925
Lsp1109I GCAGC 9 cut(s) 409, 599, 1015, 1028, 1075, 1742, 1924, 2041, 2044
LweI GCATC 4 cut(s) 94, 1086, 1439, 1882
MaeI CTAG 7 cut(s) 159, 264, 411, 479, 1746, 1863, 2181
MaeII ACGT 3 cut(s) 887, 1140, 1855
MaeIII GTNAC 7 cut(s) 406, 812, 854, 871, 1378, 1813, 1966
MalI GATC 5 cut(s) 114, 765, 1284, 1663, 2136
MboI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
MfeI CAATTG 2 cut(s) 1236, 1473
MflI RGATCY 1 cut(s) 763
MlyI GAGTC 7 cut(s) 423, 574, 700, 995, 1001, 1271, 1537
MmeI TCCRAC 3 cut(s) 1838, 1869, 2151
Mph1103I ATGCAT 1 cut(s) 1432
MroNI GCCGGC 1 cut(s) 333
MroXI GAANNNNTTC 3 cut(s) 360, 1142, 1302
MseI TTAA 7 cut(s) 645, 981, 1221, 1272, 1719, 2042, 2249
MslI CAYNNNNRTG 3 cut(s) 99, 495, 543
MspA1I CMGCKG 3 cut(s) 590, 606, 2165
MspI CCGG 6 cut(s) 334, 352, 512, 907, 1637, 2076
MspR9I CCNGG 9 cut(s) 50, 286, 352, 353, 768, 908, 1070, 1110, 2076
MunI CAATTG 2 cut(s) 1236, 1473
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 5 cut(s) 50, 286, 768, 1070, 1110
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 6 cut(s) 508, 1336, 1456, 1637, 2024, 2204
NaeI GCCGGC 1 cut(s) 335
NciI CCSGG 4 cut(s) 352, 353, 908, 2076
NcoI CCATGG 1 cut(s) 2130
NdeI CATATG 1 cut(s) 329
NdeII GATC 5 cut(s) 112, 763, 1282, 1661, 2134
NgoMIV GCCGGC 1 cut(s) 333
NmeAIII GCCGAG 1 cut(s) 1228
NmuCI GTSAC 2 cut(s) 406, 1966
NsiI ATGCAT 1 cut(s) 1432
NspI RCATGY 2 cut(s) 548, 1901
NspV TTCGAA 2 cut(s) 120, 473
PagI TCATGA 2 cut(s) 1596, 2032
PceI AGGCCT 1 cut(s) 236
PciSI GCTCTTC 2 cut(s) 2034, 2232
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 335
PdmI GAANNNNTTC 3 cut(s) 360, 1142, 1302
PfeI GAWTC 8 cut(s) 224, 632, 830, 937, 1077, 1919, 1928, 1994
PflFI GACNNNGTC 1 cut(s) 1546
PflMI CCANNNNNTGG 1 cut(s) 929
PfoI TCCNGGA 2 cut(s) 1108, 2074
PleI GAGTC 7 cut(s) 422, 573, 700, 994, 1000, 1270, 1537
PpsI GAGTC 7 cut(s) 422, 573, 700, 994, 1000, 1270, 1537
Ppu21I YACGTR 1 cut(s) 888
PpuMI RGGWCCY 2 cut(s) 187, 599
PshBI ATTAAT 1 cut(s) 1221
PsiI TTATAA 1 cut(s) 2010
Psp1406I AACGTT 1 cut(s) 1855
Psp5II RGGWCCY 2 cut(s) 187, 599
Psp6I CCWGG 5 cut(s) 48, 284, 766, 1068, 1108
PspEI GGTNACC 1 cut(s) 1966
PspFI CCCAGC 2 cut(s) 590, 602
PspGI CCWGG 5 cut(s) 48, 284, 766, 1068, 1108
PspPI GGNCC 6 cut(s) 136, 187, 387, 554, 599, 2072
PspPPI RGGWCCY 2 cut(s) 187, 599
PsrI GAACNNNNNNTAC 4 cut(s) 839, 871, 1806, 1838
PstNI CAGNNNCTG 3 cut(s) 1450, 1997, 2119
PsuI RGATCY 1 cut(s) 763
PsyI GACNNNGTC 1 cut(s) 1546
PvuII CAGCTG 2 cut(s) 590, 2165
RsaI GTAC 7 cut(s) 283, 299, 403, 1316, 2085, 2092, 2128
RsaNI GTAC 7 cut(s) 282, 298, 402, 1315, 2084, 2091, 2127
RseI CAYNNNNRTG 3 cut(s) 99, 495, 543
SapI GCTCTTC 2 cut(s) 2034, 2232
SaqAI TTAA 7 cut(s) 645, 981, 1221, 1272, 1719, 2042, 2249
Sau3AI GATC 5 cut(s) 112, 763, 1282, 1661, 2134
Sau96I GGNCC 6 cut(s) 136, 187, 387, 554, 599, 2072
ScaI AGTACT 1 cut(s) 2092
SchI GAGTC 7 cut(s) 423, 574, 700, 995, 1001, 1271, 1537
ScrFI CCNGG 9 cut(s) 50, 286, 352, 353, 768, 908, 1070, 1110, 2076
SfaNI GCATC 4 cut(s) 94, 1086, 1439, 1882
SfcI CTRYAG 1 cut(s) 850
SfuI TTCGAA 2 cut(s) 120, 473
SinI GGWCC 6 cut(s) 136, 187, 387, 554, 599, 2072
SmaI CCCGGG 1 cut(s) 353
SmiMI CAYNNNNRTG 3 cut(s) 99, 495, 543
SmlI CTYRAG 2 cut(s) 197, 1210
SmoI CTYRAG 2 cut(s) 197, 1210
SpeI ACTAGT 1 cut(s) 478
SseBI AGGCCT 1 cut(s) 236
SsiI CCGC 4 cut(s) 310, 509, 606, 1123
SspI AATATT 2 cut(s) 1441, 1593
SspMI CTAG 7 cut(s) 159, 264, 411, 479, 1746, 1863, 2181
StuI AGGCCT 1 cut(s) 236
StyD4I CCNGG 9 cut(s) 48, 284, 350, 351, 766, 906, 1068, 1108, 2074
StyI CCWWGG 2 cut(s) 1384, 2130
TaaI ACNGT 5 cut(s) 406, 439, 871, 1578, 1645
TaiI ACGT 3 cut(s) 890, 1143, 1858
TaqI TCGA 6 cut(s) 84, 120, 222, 473, 901, 1620
TatI WGTACW 3 cut(s) 1314, 2083, 2090
TauI GCSGC 2 cut(s) 313, 511
TfiI GAWTC 8 cut(s) 224, 632, 830, 937, 1077, 1919, 1928, 1994
Tru1I TTAA 7 cut(s) 645, 981, 1221, 1272, 1719, 2042, 2249
Tru9I TTAA 7 cut(s) 645, 981, 1221, 1272, 1719, 2042, 2249
TscAI CASTG 6 cut(s) 298, 874, 960, 2103, 2113, 2265
TseFI GTSAC 2 cut(s) 406, 1966
TseI GCWGC 9 cut(s) 397, 587, 1028, 1041, 1088, 1755, 1937, 2054, 2057
Tsp45I GTSAC 2 cut(s) 406, 1966
TspDTI ATGAA 9 cut(s) 860, 1257, 1311, 1479, 1503, 1585, 1613, 2021, 2049
TspGWI ACGGA 4 cut(s) 521, 607, 1536, 1824
TspMI CCCGGG 1 cut(s) 351
TspRI CASTG 6 cut(s) 298, 874, 960, 2103, 2113, 2265
Tth111I GACNNNGTC 1 cut(s) 1546
Van91I CCANNNNNTGG 1 cut(s) 929
VpaK11BI GGWCC 6 cut(s) 136, 187, 387, 554, 599, 2072
VspI ATTAAT 1 cut(s) 1221
XapI RAATTY 5 cut(s) 41, 218, 835, 1244, 1688
XceI RCATGY 2 cut(s) 548, 1901
XcmI CCANNNNNNNNNTGG 1 cut(s) 930
XmaI CCCGGG 1 cut(s) 351
XmiI GTMKAC 1 cut(s) 1580
XmnI GAANNNNTTC 3 cut(s) 360, 1142, 1302
XspI CTAG 7 cut(s) 159, 264, 411, 479, 1746, 1863, 2181
ZrmI AGTACT 1 cut(s) 2092
Zsp2I ATGCAT 1 cut(s) 1432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.