Rmu_sc0003720.1_g000022

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003720.1
OG0000165
Physical Location & Seq
Reverse (-)
116463 .. 118096
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003720.1_g000022.1.cds

Sequence Viewer

Length: 882 bp
atgttaaggagagcagctaaggtgtataccattaaaatgtttcagctatttgaaacagagtttgttggctgtatgggagttagactaaaagaagctttcaagagggatgaagtacattcatatgaagcaattgaagatggtaaacaaagtgtacacaagattcagtataactctatatccttcgacatttcttgttcttgcaagtcttttgaatcacttggaatcttgtgtagtcatgctttgaaggtgtttgatatcaataatgtcactgttttacccactcaatatatattgaagaggtggactagagaagcaaagaaagggatagtggtaagcaataacatttctggaggtacaagtgagaatataaagtctgctagattgttgcgccttagtgagctaatgcatgaaggaaatagtgtttatgacatagcttcattgagttattcagggactaagattgtgaaggagctattagtagaggcaatgaagcgtcttgagaaagacaaggaaactcaggacatgttggaaaatttgaacaaagttggtaatcagtccaatcttgacattccaataaactcaagtcatgttttagatccaccatgtgccaagactaaaggaatgacaaatgaaagaatcaaagacataagggagaaaaaacaacggaagaataagaaaacaaaagatgcaagccaagacaatcaagaaaacgtgattgattcttcttttataccaacagctccacttcatgtgccagcatttaatcctcactttggtgtacctcacaccccatttcataatcagagagttcaattggcttttaaaggaatggaggaaactattggagatgatgaagacatgtttggaactgattttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE PEARLI-4 SWIM

Protein Analysis

293

Amino Acids

33.23

Weight (kDa)

7.67

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38180
fragaria_vesca FvH4_1g09751 FvH4_1g09751 FvH4_1g09751 FvH4_1g12531 FvH4_1g19193 FvH4_2g07051 FvH4_2g17131 FvH4_2g17131 FvH4_2g28082 FvH4_5g08845 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g26361 FvH4_5g39269 FvH4_6g36651 FvH4_6g38410 FvH4_7g04941 FvH4_7g04941
malus_domestica MD00G1156400.v1.1 MD02G1139600.v1.1 MD05G1144600.v1.1 MD06G1002400.v1.1 MD10G1143900.v1.1 MD15G1227300.v1.1 MD15G1252700.v1.1
prunus_persica Prupe.2G147900_v2.0.a1 Prupe.3G257900_v2.0.a1 Prupe.5G003600_v2.0.a1 Prupe.5G053800_v2.0.a1 Prupe.6G011300_v2.0.a1 Prupe.7G161400_v2.0.a1 Prupe.7G161500_v2.0.a1 Prupe.7G188000_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1 Prupe.8G182700_v2.0.a1
pyrus_communis pycom02g11030 pycom05g13970 pycom06g00250 pycom10g12390 pycom10g12400 pycom15g20220 pycom15g22260 pycom17g05620
rosa_chinensis RchiOBHm_Chr2g0096701 RchiOBHm_Chr2g0100471 RchiOBHm_Chr2g0100481 RchiOBHm_Chr6g0281561 RchiOBHm_Chr7g0187081 RchiOBHm_Chr7g0217201 RchiOBHm_Chr7g0228321
rosa_laevigata RLG00000001574 RLG00000002527 RLG00000008169 RLG00000011104 RLG00000012963 RLG00000013720 RLG00000014615 RLG00000016663 RLG00000018214 RLG00000018621 RLG00000018622 RLG00000022494
rosa_multiflora Rmu_co8187762.1_g000001 Rmu_co8276569.1_g000001 Rmu_sc0000528.1_g000025 Rmu_sc0001095.1_g000001 Rmu_sc0001095.1_g000002 Rmu_sc0001167.1_g000007 Rmu_sc0001758.1_g000042 Rmu_sc0002147.1_g000004 Rmu_sc0002489.1_g000048 Rmu_sc0002564.1_g000015 Rmu_sc0002902.1_g000037 Rmu_sc0003565.1_g000022 Rmu_sc0003576.1_g000008 Rmu_sc0003720.1_g000022 Rmu_sc0003720.1_g000023 Rmu_sc0003862.1_g000023 Rmu_sc0006475.1_g000009 Rmu_sc0006475.1_g000010 Rmu_sc0006735.1_g000001 Rmu_sc0007586.1_g000004 Rmu_sc0009650.1_g000010 Rmu_sc0010963.1_g000005 Rmu_sc0012557.1_g000002 Rmu_sc0020744.1_g000001 Rmu_sc0020745.1_g000002 Rmu_sc0022201.1_g000001 Rmu_sc0022408.1_g000011 Rmu_sc0023414.1_g000001 Rmu_sc0025101.1_g000001 Rmu_ssc0000211.1_g000015 Rmu_ssc0000240.1_g000012
rosa_roxburghii Rroxscaffold_1G00013940 Rroxscaffold_1G00018420 Rroxscaffold_2G00142210 Rroxscaffold_2G00142230 Rroxscaffold_2G00145400 Rroxscaffold_3G00240120 Rroxscaffold_3G00240150 Rroxscaffold_3G00242500 Rroxscaffold_5G00346610 Rroxscaffold_5G00356000 Rroxscaffold_7G00187000 Rroxscaffold_7G00212120
rosa_rugosa Rorug01G0260900 Rorug01G0446900 Rorug02G0059800 Rorug02G0059900 Rorug02G0088400 Rorug02G0088500 Rorug02G0522300 Rorug03G0234100 Rorug03G0234100 Rorug03G0242400 Rorug04G0109900 Rorug04G0326100 Rorug05G0275900 Rorug06G0141600 Rorug06G0141700 Rorug06G0141700 Rorug07G0167200 Rorug07G0247000 Rorug07G0247000 Rorug07G0247100.1
rosa_samantha Rh1AG046800 Rh1AG111600 Rh1AG242600 Rh1CG226400 Rh1DG086400 Rh2AG107200 Rh2AG138100 Rh2AG528600 Rh2BG109600 Rh2BG141200 Rh2BG273400 Rh2BG357800 Rh2BG640200 Rh2CG111400 Rh2CG143400 Rh2CG161100 Rh2CG251300 Rh2DG111000 Rh2DG142900 Rh2DG651100 Rh3BG318000 Rh4AG167800 Rh4AG253700 Rh5AG282900 Rh6AG254100 Rh6BG257100 Rh6CG256400 Rh6DG248200 Rh7AG306100 Rh7BG297500 Rh7CG325200 Rh7CG420200 Rh7DG306000
rosa_wichuraiana Rw2G008310 Rw2G010790 Rw2G010800 Rw2G013840 Rw2G022430 Rw3G020550 Rw3G024980 Rw3G025930 Rw5G026810 Rw5G035870 Rw6G022060 Rw6G030700 Rw7G007420 Rw7G026010 Rw7G033340 Rw7G037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 26
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 1 cut(s) 532
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 4 cut(s) 114, 153, 355, 780
AfiI CCNNNNNNNGG 1 cut(s) 773
AflIII ACRYGT 2 cut(s) 522, 858
AgsI TTSAA 8 cut(s) 53, 100, 134, 212, 244, 295, 538, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AleI CACNNNNGTG 1 cut(s) 774
AluBI AGCT 7 cut(s) 17, 46, 95, 400, 434, 472, 740
AluI AGCT 7 cut(s) 17, 46, 95, 400, 434, 472, 740
AlwI GGATC 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 532
AspLEI GCGC 1 cut(s) 390
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 131
BfaI CTAG 2 cut(s) 306, 378
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 1 cut(s) 861
BpmI CTGGAG 1 cut(s) 369
Bpu10I CCTNAGC 1 cut(s) 18
BpuEI CTTGAG 2 cut(s) 518, 565
Bsc4I CCNNNNNNNGG 1 cut(s) 773
Bse3DI GCAATG 1 cut(s) 492
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 773
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 151
Bsp143I GATC 1 cut(s) 595
BspCNI CTCAG 1 cut(s) 529
BspPI GGATC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 151
BssMI GATC 1 cut(s) 595
BssNAI GTATAC 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 691, 756
BstDEI CTNAG 4 cut(s) 18, 392, 456, 516
BstF5I GGATG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 598
BstMBI GATC 1 cut(s) 595
BstNSI RCATGY 2 cut(s) 526, 862
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 595
BstYI RGATCY 1 cut(s) 595
BstZ17I GTATAC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 691, 756
CfoI GCGC 1 cut(s) 390
CseI GACGC 1 cut(s) 482
Csp6I GTAC 4 cut(s) 113, 152, 354, 779
CviAII CATG 7 cut(s) 236, 407, 523, 587, 603, 749, 859
CviQI GTAC 4 cut(s) 113, 152, 354, 779
DdeI CTNAG 4 cut(s) 18, 392, 456, 516
DpnI GATC 1 cut(s) 597
DpnII GATC 1 cut(s) 595
DraI TTTAAA 1 cut(s) 823
DraIII CACNNNGTG 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Eco32I GATATC 1 cut(s) 256
EcoRV GATATC 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 408
FaeI CATG 7 cut(s) 239, 410, 526, 590, 606, 752, 862
FaqI GGGAC 1 cut(s) 466
FatI CATG 7 cut(s) 235, 406, 522, 586, 602, 748, 858
FauNDI CATATG 1 cut(s) 121
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 306, 378
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 369
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 390
Hin1II CATG 7 cut(s) 239, 410, 526, 590, 606, 752, 862
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 93
HinfI GANTC 5 cut(s) 160, 212, 222, 636, 719
Hpy166II GTNNAC 6 cut(s) 27, 143, 152, 154, 303, 779
Hpy188I TCNGA 1 cut(s) 804
Hpy188III TCNNGA 6 cut(s) 100, 348, 497, 518, 563, 704
Hpy8I GTNNAC 6 cut(s) 27, 143, 152, 154, 303, 779
HpyAV CCTTC 4 cut(s) 190, 238, 404, 460
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 3 cut(s) 201, 406, 689
HpyF3I CTNAG 4 cut(s) 18, 392, 456, 516
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 7 cut(s) 239, 410, 526, 590, 606, 752, 862
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 1 cut(s) 595
LmnI GCTCC 2 cut(s) 469, 745
LpnPI CCDG 4 cut(s) 333, 435, 503, 768
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 1 cut(s) 676
MaeI CTAG 2 cut(s) 306, 378
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 597
MboI GATC 1 cut(s) 595
MboII GAAGA 5 cut(s) 146, 307, 679, 714, 866
MfeI CAATTG 2 cut(s) 129, 812
MflI RGATCY 1 cut(s) 595
MluCI AATT 3 cut(s) 129, 532, 812
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 7 cut(s) 96, 291, 344, 475, 777, 792, 826
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 4 cut(s) 5, 33, 762, 822
MslI CAYNNNNRTG 3 cut(s) 35, 120, 774
MunI CAATTG 2 cut(s) 129, 812
NdeI CATATG 1 cut(s) 121
NdeII GATC 1 cut(s) 595
NlaIII CATG 7 cut(s) 239, 410, 526, 590, 606, 752, 862
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 2 cut(s) 526, 862
OliI CACNNNNGTG 1 cut(s) 774
PciI ACATGT 2 cut(s) 522, 858
PfeI GAWTC 5 cut(s) 160, 212, 222, 636, 719
PkrI GCNGC 1 cut(s) 16
PscI ACATGT 2 cut(s) 522, 858
PsuI RGATCY 1 cut(s) 595
RsaI GTAC 4 cut(s) 114, 153, 355, 780
RsaNI GTAC 4 cut(s) 113, 152, 354, 779
RseI CAYNNNNRTG 3 cut(s) 35, 120, 774
SaqAI TTAA 4 cut(s) 5, 33, 762, 822
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 595
SfaNI GCATC 1 cut(s) 676
SmiMI CAYNNNNRTG 3 cut(s) 35, 120, 774
SmlI CTYRAG 2 cut(s) 497, 580
SmoI CTYRAG 2 cut(s) 497, 580
Sse9I AATT 3 cut(s) 129, 532, 812
SspMI CTAG 2 cut(s) 306, 378
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 714
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 129, 532, 812
TatI WGTACW 2 cut(s) 112, 151
TfiI GAWTC 5 cut(s) 160, 212, 222, 636, 719
Tru1I TTAA 4 cut(s) 5, 33, 762, 822
Tru9I TTAA 4 cut(s) 5, 33, 762, 822
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 679
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 532
XceI RCATGY 2 cut(s) 526, 862
XmiI GTMKAC 1 cut(s) 26
XspI CTAG 2 cut(s) 306, 378
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.