Rmu_sc0030614.1_g000001

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030614.1
OG0018518
Physical Location & Seq
Forward (+)
294 .. 1162
869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030614.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
atgcaagtgtggactgaacactatgtcatggaggtagaggtttccagtgaagaagtagtggactcttatgtgtcgttggaagacgaaggctatgaacattgtgttgtagaggacgtcgaagttcgggtggtgttggatgatgtcaaagaggataatggggatattgatttggtgcagtatatggcaggtggcgataatggtgggattatagagcccacattggacatggagtttgattccgaagatgatgcgaggaatttctataatgcatatgctaaacacattggatttagtattcgagggcctagggccatcactagggaaggtttcaaggcactgatgactgttaggaaacgtgagaatgggagatattatgtagctaaactagagaagagccataatcatgagttggtgactcctgcaatgcggcattttcttacgtcacataagcaggaatgtgatcctaatcagagttcgagcaactcctttagttctcctgggatgtctttagatgctcccatgaatgtcttgagtgattgtagcagttttgggaaaatggcctttgctgtacagagtaatgcgagttatattggaagaggccggttgagcacttttggcattgatgcccaaagtttgcttgggttttttaagattatgcaagctagtgatcttgcattttattatgcagtacaggttgatgaagaagataggttaagtactgtttttttgggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

244

Amino Acids

27.4

Weight (kDa)

4.6

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018518)

Species Orthologous Gene IDs
prunus_persica Prupe.8G037300_v2.0.a1
pyrus_communis pycom111g05270
rosa_laevigata RLG00000021612
rosa_multiflora Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa Rorug02G0522300
rosa_samantha Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
AatII GACGTC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 176
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 256
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 3 cut(s) 570, 690, 718
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 1 cut(s) 331
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 2 cut(s) 380, 662
AluI AGCT 2 cut(s) 380, 662
Alw21I GWGCWC 1 cut(s) 611
AlwI GGATC 1 cut(s) 455
AoxI GGCC 4 cut(s) 302, 309, 558, 598
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspA2I CCTAGG 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 302, 309
AsuHPI GGTGA 1 cut(s) 424
AvrII CCTAGG 1 cut(s) 305
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 611
BccI CCATC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BciT130I CCWGG 1 cut(s) 498
BfaI CTAG 4 cut(s) 306, 318, 386, 663
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 1 cut(s) 428
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 1 cut(s) 429
BmcAI AGTACT 1 cut(s) 718
Bme1390I CCNGG 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 302, 309
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 3 cut(s) 238, 502, 613
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 550
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 305, 497
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 1 cut(s) 600
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 305, 497
BseGI GGATG 2 cut(s) 142, 507
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 429
BseNI ACTGG 1 cut(s) 45
BsgI GTGCAG 1 cut(s) 194
BshFI GGCC 4 cut(s) 304, 311, 560, 600
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 1 cut(s) 601
BslI CCNNNNNNNGG 1 cut(s) 318
BsnI GGCC 4 cut(s) 304, 311, 560, 600
Bsp1286I GDGCHC 2 cut(s) 216, 611
Bsp1407I TGTACA 1 cut(s) 568
Bsp143I GATC 2 cut(s) 460, 667
BspACI CCGC 1 cut(s) 427
BspANI GGCC 4 cut(s) 304, 311, 560, 600
BspHI TCATGA 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 386
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 1 cut(s) 600
BsrGI TGTACA 1 cut(s) 568
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 600
BssECI CCNNGG 2 cut(s) 305, 497
BssMI GATC 2 cut(s) 460, 667
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 305
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 346, 721
Bst6I CTCTTC 2 cut(s) 386, 589
BstACI GRCGYC 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 660
BstF5I GGATG 2 cut(s) 142, 507
BstKTI GATC 2 cut(s) 463, 670
BstMBI GATC 2 cut(s) 460, 667
BstMWI GCNNNNNNNGC 2 cut(s) 606, 615
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 4 cut(s) 304, 311, 560, 600
BtsCI GGATG 2 cut(s) 142, 507
BtsIMutI CAGTG 2 cut(s) 52, 335
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 660
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 600
Cfr13I GGNCC 2 cut(s) 302, 309
Csp6I GTAC 3 cut(s) 569, 689, 717
CviAII CATG 4 cut(s) 28, 226, 404, 520
CviJI RGCY 9 cut(s) 90, 214, 304, 311, 380, 396, 560, 600, 662
CviKI_1 RGCY 9 cut(s) 90, 214, 304, 311, 380, 396, 560, 600, 662
CviQI GTAC 3 cut(s) 569, 689, 717
DpnI GATC 2 cut(s) 462, 669
DpnII GATC 2 cut(s) 460, 667
Eam1104I CTCTTC 2 cut(s) 386, 589
EarI CTCTTC 2 cut(s) 386, 589
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 305
EcoT22I ATGCAT 1 cut(s) 271
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 4 cut(s) 31, 229, 407, 523
FatI CATG 4 cut(s) 27, 225, 403, 519
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 428
FokI GGATG 2 cut(s) 149, 514
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 428
FspBI CTAG 4 cut(s) 306, 318, 386, 663
GluI GCNGC 1 cut(s) 428
HaeIII GGCC 4 cut(s) 304, 311, 560, 600
HapII CCGG 1 cut(s) 601
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 4 cut(s) 31, 229, 407, 523
HinfI GANTC 3 cut(s) 62, 236, 415
HpaII CCGG 1 cut(s) 601
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 2 cut(s) 12, 61
Hpy188I TCNGA 2 cut(s) 241, 471
Hpy188III TCNNGA 2 cut(s) 404, 529
Hpy8I GTNNAC 2 cut(s) 12, 61
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 80, 317
HpyCH4III ACNGT 2 cut(s) 346, 721
HpyCH4IV ACGT 3 cut(s) 114, 355, 440
HpyCH4V TGCA 7 cut(s) 4, 175, 269, 422, 658, 674, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 606, 615
HpySE526I ACGT 3 cut(s) 114, 355, 440
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 4 cut(s) 31, 229, 407, 523
Kzo9I GATC 2 cut(s) 460, 667
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 8 cut(s) 58, 171, 432, 437, 483, 510, 614, 677
LweI GCATC 3 cut(s) 238, 502, 613
MaeI CTAG 4 cut(s) 306, 318, 386, 663
MaeII ACGT 3 cut(s) 114, 355, 440
MaeIII GTNAC 2 cut(s) 412, 441
MalI GATC 2 cut(s) 462, 669
MboI GATC 2 cut(s) 460, 667
MboII GAAGA 7 cut(s) 62, 92, 254, 403, 606, 713, 716
MhlI GDGCHC 2 cut(s) 216, 611
MluCI AATT 1 cut(s) 256
MlyI GAGTC 2 cut(s) 56, 409
MmeI TCCRAC 2 cut(s) 57, 114
MnlI CCTC 7 cut(s) 25, 31, 103, 142, 246, 293, 590
Mph1103I ATGCAT 1 cut(s) 271
MseI TTAA 2 cut(s) 648, 713
MslI CAYNNNNRTG 1 cut(s) 402
MspI CCGG 1 cut(s) 601
MspR9I CCNGG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 2 cut(s) 606, 615
NdeI CATATG 1 cut(s) 271
NdeII GATC 2 cut(s) 460, 667
NlaIII CATG 4 cut(s) 31, 229, 407, 523
NmuCI GTSAC 2 cut(s) 412, 441
NsiI ATGCAT 1 cut(s) 271
PagI TCATGA 1 cut(s) 403
PaqCI CACCTGC 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 386
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 429
PleI GAGTC 2 cut(s) 56, 409
PpsI GAGTC 2 cut(s) 56, 409
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspPI GGNCC 2 cut(s) 302, 309
RsaI GTAC 3 cut(s) 570, 690, 718
RsaNI GTAC 3 cut(s) 569, 689, 717
RseI CAYNNNNRTG 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 2 cut(s) 648, 713
SatI GCNGC 1 cut(s) 428
Sau3AI GATC 2 cut(s) 460, 667
Sau96I GGNCC 2 cut(s) 302, 309
ScaI AGTACT 1 cut(s) 718
SchI GAGTC 2 cut(s) 56, 409
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 2 cut(s) 216, 611
SfaNI GCATC 3 cut(s) 238, 502, 613
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 1 cut(s) 256
SsiI CCGC 1 cut(s) 427
SspMI CTAG 4 cut(s) 306, 318, 386, 663
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 2 cut(s) 346, 721
TaiI ACGT 3 cut(s) 117, 358, 443
TaqI TCGA 3 cut(s) 117, 298, 476
TasI AATT 1 cut(s) 256
TatI WGTACW 3 cut(s) 568, 688, 716
TauI GCSGC 1 cut(s) 430
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 648, 713
Tru9I TTAA 2 cut(s) 648, 713
TscAI CASTG 2 cut(s) 52, 342
TseFI GTSAC 2 cut(s) 412, 441
Tsp45I GTSAC 2 cut(s) 412, 441
TspDTI ATGAA 3 cut(s) 108, 536, 714
TspRI CASTG 2 cut(s) 52, 342
XapI RAATTY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 635
XmaJI CCTAGG 1 cut(s) 305
XspI CTAG 4 cut(s) 306, 318, 386, 663
ZraI GACGTC 1 cut(s) 115
ZrmI AGTACT 1 cut(s) 718
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.