Rh2BG600400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018518
Physical Location & Seq
Reverse (-)
82114509 .. 82114787
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG600400.1

Sequence Viewer

Length: 279 bp
ATGACTGTTAGGAAACGTGAGAATGGGAGATGGTATGTAGCTAAACTAGAGAAGAGCCATAATCATGAGTTGGTGACTCCTGCAATGCGGCATTTTCTTACGTCACATAAGCAGGAATGTGATCCTAATCAGAGTTCGAGCAACTCCTTTAGTTCTCCTGGGATGTCTTTAGATGCTCCCATGAATGTCTTGAGTGATTGTAGCAGATTTGGGAAAATGGCCTTTGCTGTACAGAGTAATGCGAATTATATTGGAAGAGGCCGGTTGAGCACTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

92

Amino Acids

10.38

Weight (kDa)

9.69

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018518)

Species Orthologous Gene IDs
prunus_persica Prupe.8G037300_v2.0.a1
pyrus_communis pycom111g05270
rosa_laevigata RLG00000021612
rosa_multiflora Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa Rorug02G0522300
rosa_samantha Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 88
AclWI GGATC 1 cut(s) 116
AfaI GTAC 1 cut(s) 231
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 116
AoxI GGCC 2 cut(s) 219, 259
AsuHPI GGTGA 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 272
BccI CCATC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 47
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 158
Bse118I RCCGGY 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 126
BseMI GCAATG 1 cut(s) 90
BshFI GGCC 2 cut(s) 221, 261
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 262
BsnI GGCC 2 cut(s) 221, 261
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 88
BspANI GGCC 2 cut(s) 221, 261
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 2 cut(s) 47, 250
BstAUI TGTACA 1 cut(s) 229
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 221, 261
BtsCI GGATG 1 cut(s) 168
CciI TCATGA 1 cut(s) 64
Cfr10I RCCGGY 1 cut(s) 261
Csp6I GTAC 1 cut(s) 230
CviAII CATG 2 cut(s) 65, 181
CviJI RGCY 4 cut(s) 41, 57, 221, 261
CviKI_1 RGCY 4 cut(s) 41, 57, 221, 261
CviQI GTAC 1 cut(s) 230
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 47, 250
EarI CTCTTC 2 cut(s) 47, 250
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 68, 184
FaiI YATR 6 cut(s) 36, 60, 66, 108, 182, 249
FatI CATG 2 cut(s) 64, 180
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 89
FspBI CTAG 1 cut(s) 47
GluI GCNGC 1 cut(s) 89
HaeIII GGCC 2 cut(s) 221, 261
HapII CCGG 1 cut(s) 262
Hin1II CATG 2 cut(s) 68, 184
HinfI GANTC 1 cut(s) 76
HpaII CCGG 1 cut(s) 262
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 2 cut(s) 65, 190
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 2 cut(s) 16, 101
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpySE526I ACGT 2 cut(s) 16, 101
Hsp92II CATG 2 cut(s) 68, 184
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 5 cut(s) 93, 98, 144, 171, 275
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 16, 101
MaeIII GTNAC 2 cut(s) 73, 102
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 64, 267
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 244
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 1 cut(s) 251
MseI TTAA 1 cut(s) 277
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 267
NdeII GATC 1 cut(s) 121
NlaIII CATG 2 cut(s) 68, 184
NmuCI GTSAC 2 cut(s) 73, 102
PagI TCATGA 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 90
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 1 cut(s) 89
Sau3AI GATC 1 cut(s) 121
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 272
SetI ASST 3 cut(s) 19, 43, 104
SfaNI GCATC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 2 cut(s) 19, 104
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseFI GTSAC 2 cut(s) 73, 102
Tsp45I GTSAC 2 cut(s) 73, 102
TspDTI ATGAA 1 cut(s) 197
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.