RLG00000021612

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018518
Physical Location & Seq
Reverse (-)
76723793 .. 76724364
572 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021612

Sequence Viewer

Length: 429 bp
ATGCAAGTGGGGACTGAACACTATGTCATGGAGGTAGAGGTTTCCAGTGAAGCTAAAGTAGTGGAATCTTATGTGTCGTTGGAAGACGAAGGCTATGAACATTGTGTTTATATGGCAGGTGGGGATAATGGTGGGATTATAGAGCACACATTGGACATGGAGTTTGATTCCGAAGATGATGCGAGGAATTTCTATAATGCATATGCTAAACACATTGGATTTAGTATTCGAGGGTTCCGCAGAGTGCGACGTGCTAAGAATGATGCTAGTGATGGTGCAAAAAGGATGTGTGCTAGGGCCATCACTAGGGAAGGTTGCAAGGCACTGACGACTGTTAGGAAACGTGAGAATGAGAGATGGTATGTGGCGAAACTAGAGAAGAGCCATAATCATAGAGTTGGTGACTCCTGCAATGCGGCATATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

143

Amino Acids

16.15

Weight (kDa)

6.07

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 89 - 133 4.6e-10 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018518)

Species Orthologous Gene IDs
prunus_persica Prupe.8G037300_v2.0.a1
pyrus_communis pycom111g05270
rosa_laevigata RLG00000021612
rosa_multiflora Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa Rorug02G0522300
rosa_samantha Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 107
Acc36I ACCTGC 1 cut(s) 107
AciI CCGC 2 cut(s) 238, 416
AcsI RAATTY 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 306
AjiI CACGTC 1 cut(s) 251
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 147
AoxI GGCC 1 cut(s) 297
ApoI RAATTY 1 cut(s) 187
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 147
BccI CCATC 3 cut(s) 266, 308, 351
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BfaI CTAG 4 cut(s) 267, 294, 306, 374
BfuAI ACCTGC 1 cut(s) 107
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 2 cut(s) 169, 253
BpiI GAAGAC 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 418
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 147
BspACI CCGC 2 cut(s) 238, 416
BspANI GGCC 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 418
BsrI ACTGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 1 cut(s) 374
BstDEI CTNAG 2 cut(s) 255, 426
BstF5I GGATG 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 299
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 52, 323
BveI ACCTGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 297
CviAII CATG 2 cut(s) 28, 157
CviJI RGCY 4 cut(s) 53, 93, 299, 384
CviKI_1 RGCY 4 cut(s) 53, 93, 299, 384
DdeI CTNAG 2 cut(s) 255, 426
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 202
FaeI CATG 2 cut(s) 31, 160
FaqI GGGAC 1 cut(s) 25
FatI CATG 2 cut(s) 27, 156
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 4 cut(s) 267, 294, 306, 374
GluI GCNGC 1 cut(s) 417
HaeIII GGCC 1 cut(s) 299
Hin1II CATG 2 cut(s) 31, 160
HinfI GANTC 3 cut(s) 65, 167, 404
HphI GGTGA 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 172
Hpy99I CGWCG 1 cut(s) 252
HpyAV CCTTC 2 cut(s) 83, 305
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 2 cut(s) 250, 343
HpyCH4V TGCA 5 cut(s) 4, 200, 278, 318, 411
HpyF3I CTNAG 2 cut(s) 255, 426
HpySE526I ACGT 2 cut(s) 250, 343
Hsp92II CATG 2 cut(s) 31, 160
LguI GCTCTTC 1 cut(s) 374
LpnPI CCDG 3 cut(s) 58, 102, 421
LweI GCATC 2 cut(s) 169, 253
MaeI CTAG 4 cut(s) 267, 294, 306, 374
MaeII ACGT 2 cut(s) 250, 343
MaeIII GTNAC 1 cut(s) 401
MboII GAAGA 3 cut(s) 95, 185, 391
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 25, 31, 177, 224
Mph1103I ATGCAT 1 cut(s) 202
NdeI CATATG 1 cut(s) 202
NlaIII CATG 2 cut(s) 31, 160
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 65, 167
PkrI GCNGC 1 cut(s) 418
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 374
SatI GCNGC 1 cut(s) 417
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 36, 42, 55, 121, 253, 316, 346
SfaNI GCATC 2 cut(s) 169, 253
Sse9I AATT 1 cut(s) 187
SsiI CCGC 2 cut(s) 238, 416
SspMI CTAG 4 cut(s) 267, 294, 306, 374
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 2 cut(s) 253, 346
TaqI TCGA 1 cut(s) 229
TasI AATT 1 cut(s) 187
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 2 cut(s) 65, 167
TscAI CASTG 2 cut(s) 52, 330
TseFI GTSAC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 111
TspRI CASTG 2 cut(s) 52, 330
XapI RAATTY 1 cut(s) 187
XspI CTAG 4 cut(s) 267, 294, 306, 374
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.