Rh2DG610600

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018518
Physical Location & Seq
Reverse (-)
84344309 .. 84344752
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG610600.1

Sequence Viewer

Length: 444 bp
ATGGAGGTAGAGGTTTCCAGTGAAGCTAAAGTAGTGAACTCTTATGTGTCGTTGGAAGACGAAGGCTATGAACATTGTGTTGTAGAGGATGTCGAAGCTCCGGTGGTGTTGGATGATGTCAGAGAGGATAATGGGGATATTGATTTGGTGCAGTATATGGCAGGTGGGGATAATGGTGGGATTATAGAGCCCACATTGGATATGGAGTTTGATTCCGAAGATGATGCGAGGAATTTCTATAATGCATATGCTAAACACATTGGATTTAGTATTCGAGTGAATTCTTATTATCGTTCGAAGAAGGATAATTCGATTATATCTAGAGAGTTTTGTTGTTCCAAAGAGGGGTTTCGCAGAGAGAGAGACGTGCTAAGAATGATTCTAGTGATGGTGCAAAAACGAGGCGTGCTAGGGCCATCACTAGGGAAGGTTCCAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

147

Amino Acids

16.67

Weight (kDa)

4.69

Isoelectric Point (pI)

48.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 122 2.4e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018518)

Species Orthologous Gene IDs
prunus_persica Prupe.8G037300_v2.0.a1
pyrus_communis pycom111g05270
rosa_laevigata RLG00000021612
rosa_multiflora Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa Rorug02G0522300
rosa_samantha Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 232, 280
AfiI CCNNNNNNNGG 2 cut(s) 345, 422
AjiI CACGTC 1 cut(s) 367
AluBI AGCT 2 cut(s) 26, 98
AluI AGCT 2 cut(s) 26, 98
Alw26I GTCTC 1 cut(s) 357
AoxI GGCC 1 cut(s) 413
ApoI RAATTY 2 cut(s) 232, 280
AspS9I GGNCC 1 cut(s) 413
AsuII TTCGAA 1 cut(s) 296
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 63
BccI CCATC 2 cut(s) 382, 424
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 4 cut(s) 321, 383, 410, 422
BfuAI ACCTGC 1 cut(s) 152
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 432
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 422
Bse1I ACTGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 2 cut(s) 94, 118
BseLI CCNNNNNNNGG 2 cut(s) 345, 422
BseNI ACTGG 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 1 cut(s) 415
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 345, 422
BsmAI GTCTC 1 cut(s) 357
BsmBI CGTCTC 1 cut(s) 357
BsnI GGCC 1 cut(s) 415
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 192
BspANI GGCC 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 152
BspT104I TTCGAA 1 cut(s) 296
BsrI ACTGG 1 cut(s) 18
BssECI CCNNGG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 434
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 94, 118
BstMAI GTCTC 1 cut(s) 357
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 415
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 94, 118
BtsIMutI CAGTG 2 cut(s) 25, 439
BveI ACCTGC 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 413
CviJI RGCY 5 cut(s) 26, 66, 98, 190, 415
CviKI_1 RGCY 5 cut(s) 26, 66, 98, 190, 415
DdeI CTNAG 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 434
EcoT22I ATGCAT 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 357
FauNDI CATATG 1 cut(s) 247
FokI GGATG 2 cut(s) 101, 125
FriOI GRGCYC 1 cut(s) 192
FspBI CTAG 4 cut(s) 321, 383, 410, 422
HaeIII GGCC 1 cut(s) 415
HapII CCGG 1 cut(s) 101
HinfI GANTC 2 cut(s) 212, 379
HpaII CCGG 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 2 cut(s) 122, 217
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 56, 295, 421
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 151, 245, 394
HpyF3I CTNAG 1 cut(s) 371
HpySE526I ACGT 1 cut(s) 366
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 31, 114, 147
LweI GCATC 1 cut(s) 214
MaeI CTAG 4 cut(s) 321, 383, 410, 422
MaeII ACGT 1 cut(s) 366
MboII GAAGA 3 cut(s) 68, 230, 310
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 3 cut(s) 232, 280, 307
MmeI TCCRAC 2 cut(s) 33, 90
MnlI CCTC 6 cut(s) 4, 79, 118, 222, 337, 395
Mph1103I ATGCAT 1 cut(s) 247
MspI CCGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 247
NspV TTCGAA 1 cut(s) 296
PaqCI CACCTGC 1 cut(s) 152
PfeI GAWTC 2 cut(s) 212, 379
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 1 cut(s) 413
Sau96I GGNCC 1 cut(s) 413
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 9, 15, 28, 100, 166, 369, 432
SfaNI GCATC 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 296
Sse9I AATT 3 cut(s) 232, 280, 307
SspMI CTAG 4 cut(s) 321, 383, 410, 422
StyI CCWWGG 1 cut(s) 434
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 93, 274, 296, 311
TasI AATT 3 cut(s) 232, 280, 307
TfiI GAWTC 2 cut(s) 212, 379
TscAI CASTG 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 25
XapI RAATTY 2 cut(s) 232, 280
XbaI TCTAGA 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 4 cut(s) 321, 383, 410, 422
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.