Rh2AG588400

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018518
Physical Location & Seq
Reverse (-)
81991447 .. 81991740
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG588400.1

Sequence Viewer

Length: 294 bp
ATGGCAGGTGGCGATAATGGTGGGATTATAGAGCCCACATTGGACATGGAGTTTGATTCCGAAGATGATATGAGGAATTTCTATAATGCATATGCTAAACACATTGGATTTAGTATTCGAGTGAATTCTTATTATCGTTCGAAGAAGGATAATTCGATTATATCTAGAGAGTTTTGTTGTTCCAAAGAGGGGTTTTGCAGAGAGAGACTTGCTAAGAATGATTCTAGTGATGGTGCAAAAACGAGGCGTGCTAGGGGCCTAGGGCCATCACTAGGGAAGGTTGCAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

97

Amino Acids

10.89

Weight (kDa)

8.86

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 26 - 76 3.5e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018518)

Species Orthologous Gene IDs
prunus_persica Prupe.8G037300_v2.0.a1
pyrus_communis pycom111g05270
rosa_laevigata RLG00000021612
rosa_multiflora Rmu_co8131344.1_g000001 Rmu_sc0007974.1_g000005 Rmu_sc0030614.1_g000001
rosa_rugosa Rorug02G0522300
rosa_samantha Rh2AG588400 Rh2BG600400 Rh2DG610600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 76, 124
AfiI CCNNNNNNNGG 2 cut(s) 189, 272
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 2 cut(s) 256, 263
ApoI RAATTY 2 cut(s) 76, 124
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspA2I CCTAGG 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 256, 263
AsuII TTCGAA 1 cut(s) 140
AvrII CCTAGG 1 cut(s) 259
BanII GRGCYC 1 cut(s) 36
BccI CCATC 2 cut(s) 224, 274
BcoDI GTCTC 1 cut(s) 199
BfaI CTAG 5 cut(s) 165, 225, 252, 260, 272
BlnI CCTAGG 1 cut(s) 259
BmgT120I GGNCC 2 cut(s) 256, 263
BmiI GGNNCC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 272
BseDI CCNNGG 1 cut(s) 259
BseLI CCNNNNNNNGG 2 cut(s) 189, 272
BshFI GGCC 2 cut(s) 258, 265
BslI CCNNNNNNNGG 2 cut(s) 189, 272
BsmAI GTCTC 1 cut(s) 199
BsnI GGCC 2 cut(s) 258, 265
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 36
BspANI GGCC 2 cut(s) 258, 265
BspLI GGNNCC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 259
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 258, 265
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 256, 263
CviAII CATG 1 cut(s) 46
CviJI RGCY 3 cut(s) 34, 258, 265
CviKI_1 RGCY 3 cut(s) 34, 258, 265
DdeI CTNAG 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 91
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 49
FaiI YATR 7 cut(s) 29, 47, 71, 84, 91, 93, 161
FatI CATG 1 cut(s) 45
FauNDI CATATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 36
FspBI CTAG 5 cut(s) 165, 225, 252, 260, 272
HaeIII GGCC 2 cut(s) 258, 265
Hin1II CATG 1 cut(s) 49
HinfI GANTC 2 cut(s) 56, 221
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 165
HpyAV CCTTC 2 cut(s) 139, 271
HpyCH4V TGCA 4 cut(s) 89, 198, 236, 284
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 49
MaeI CTAG 5 cut(s) 165, 225, 252, 260, 272
MboII GAAGA 2 cut(s) 74, 154
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 3 cut(s) 76, 124, 151
MnlI CCTC 3 cut(s) 66, 181, 237
Mph1103I ATGCAT 1 cut(s) 91
NdeI CATATG 1 cut(s) 91
NlaIII CATG 1 cut(s) 49
NlaIV GGNNCC 1 cut(s) 257
NsiI ATGCAT 1 cut(s) 91
NspV TTCGAA 1 cut(s) 140
PfeI GAWTC 2 cut(s) 56, 221
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 256, 263
Sau96I GGNCC 2 cut(s) 256, 263
SduI GDGCHC 1 cut(s) 36
SetI ASST 2 cut(s) 10, 282
SfuI TTCGAA 1 cut(s) 140
Sse9I AATT 3 cut(s) 76, 124, 151
SspMI CTAG 5 cut(s) 165, 225, 252, 260, 272
StyI CCWWGG 1 cut(s) 259
TaqI TCGA 3 cut(s) 118, 140, 155
TasI AATT 3 cut(s) 76, 124, 151
TfiI GAWTC 2 cut(s) 56, 221
XapI RAATTY 2 cut(s) 76, 124
XbaI TCTAGA 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmaJI CCTAGG 1 cut(s) 259
XspI CTAG 5 cut(s) 165, 225, 252, 260, 272
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.