Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011363

Physical Location & Seq

Genomic Coordinates Reverse (-)

467469 .. 468677

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGTTCATCAAGACCTTCCCATCACCACCGCCGCAACGACCACAACCGCCGCCACAAACCGAAAGAAACTCACCCTCATCCCTCTTATCTTTCTCATCTACTTCGAAGTCGCCGGTGGCCCTTATGGGGAAGAGCCTGCAGTCAAAGCCGCCGGACCCCTTTTCGCCATTCTCGGCTTCCTCATCTTCCCATTCATCTGGAGTGTCCCGGAAGCTCTCATCACTGCCGAGCTCTCCACCGCCTTCCCTGGAAATGGCGGTTTTGTCATCTGGGCAGACCGCGCTTTCGGCCCTTTCTGGGGCTCTTTGATGGGAACCTGGAAGTTTCTCAGCGGAGTCATCAACATCGCAGCATTTCCGGTTCTTTGCATTGATTACATGGACAAGATAATCCCTGCTTTCGAATCCGGTTGGCCTAGGTATCTTGCAATCTCTGTTTCAACTCTGATTCTTTCTTTCGTAAACTATACCGGTTTAACTATTGTTGGATATGCTGCTGTTCTTCTCGCTATCGCTTCGCTTTCACCTTTTATTTTGATGTGTTTGATTGCCATTCCGAAGATTCATCCTCACCGTTGGTTGAGTCTCGGGCAGAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACCCTCTTTTGGAATTTAAATTTTTGGGACAACGTGAGTACTTTAGCTGGGGAAGTAGATAACCCCCAGAAAACTTTTCCGGTGGCTCTTTTCGTGGCGGTGATCTTTACTTGCTTGGCATACTTGTTCCCACTTTTCGCTGTGATTGGTTCGGTTAATGTGGATCAAACTAGATGGGGTTCTGGATTTCATGCCGAGGCTGCTGAAATGATCGCTGGAAAATGGTTGAAGTATTGGATTGAAGTTGGTGCAGTGTTATCAGGGATTGGACTTTTTGAAGCACAACTAAGCAGTTGTGGTTACCAACTTCTCGGTATGGCGGATATAGGGTTCTTGCCTAAGTTTTTCGCTCTTCGGTCCAAGAGGTTTAACACCCCGTGGGTCGGAATTTTACTTTCCACAGTGATCACTCTTGGAGTTTCCTTCATGAACTTTACAGATATTGTATCATCTGCAAATTTCTTGTATAGTTTGGGAATGCTATTGGAATTTTCAGCTTTTCTTTGGTTGAGGAGGAAGTCGCCGACATTGAAGAGGCCTTTTCGAGTTCCGATGAGGATGCCAGGTTTGGTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AA_permease_2

Protein Analysis

403

Amino Acids

44.45

Weight (kDa)

9.08

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_permease_2	PF13520	27 - 397	3.3e-38	Amino acid permease
AA_permease	PF00324	47 - 389	5.9e-19	Amino acid permease
Trp_Tyr_perm	PF03222	60 - 264	6.6e-06	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13620
fragaria_vesca	FvH4_3g45240
malus_domestica	MD03G1006800.v1.1 MD11G1010000.v1.1
prunus_persica	Prupe.6G006500_v2.0.a1
pyrus_communis	pycom03g00710 pycom05g24020 pycom11g00630
rosa_chinensis	RchiOBHm_Chr5g0082861
rosa_laevigata	RLG00000036995
rosa_multiflora	Rmu_co8414725.1_g000001 Rmu_sc0001381.1_g000012 Rmu_sc0007172.1_g000003
rosa_roxburghii	Rroxscaffold_1G00001580
rosa_rugosa	Rorug05G0480400
rosa_samantha	Rh5AG530800 Rh5BG557700 Rh5CG580700 Rh5DG566000
rosa_wichuraiana	Rw5G049790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	282
AclWI	GGATC	1 cut(s)	801
AcsI	RAATTY	5 cut(s)	643, 649, 1017, 1087, 1118
AdeI	CACNNNGTG	1 cut(s)	1008
AfaI	GTAC	1 cut(s)	670
AfiI	CCNNNNNNNGG	6 cut(s)	127, 254, 298, 299, 639, 1013
AgeI	ACCGGT	1 cut(s)	470
AgsI	TTSAA	6 cut(s)	441, 628, 859, 872, 908, 1162
AjnI	CCWGG	3 cut(s)	247, 317, 1192
AloI	GAACNNNNNNTCC	2 cut(s)	944, 976
AluBI	AGCT	4 cut(s)	215, 232, 677, 1127
AluI	AGCT	4 cut(s)	215, 232, 677, 1127
Alw21I	GWGCWC	1 cut(s)	234
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	801
Ama87I	CYCGRG	1 cut(s)	587
AoxI	GGCC	4 cut(s)	118, 289, 413, 1166
ApeKI	GCWGC	3 cut(s)	350, 494, 830
ApoI	RAATTY	5 cut(s)	643, 649, 1017, 1087, 1118
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AsiGI	ACCGGT	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	620
AspA2I	CCTAGG	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	4 cut(s)	119, 155, 290, 987
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	5 cut(s)	16, 64, 516, 563, 742
AsuII	TTCGAA	2 cut(s)	105, 402
AvaI	CYCGRG	1 cut(s)	587
AvaII	GGWCC	2 cut(s)	155, 987
AvrII	CCTAGG	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	234, 305
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	362, 481, 817
BccI	CCATC	3 cut(s)	29, 304, 798
BcgI	CGANNNNNNTGC	2 cut(s)	1171, 1205
BciT130I	CCWGG	3 cut(s)	249, 319, 1194
BclI	TGATCA	1 cut(s)	1035
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	590
BfaI	CTAG	2 cut(s)	417, 801
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	6 cut(s)	33, 51, 150, 351, 495, 831
BlnI	CCTAGG	1 cut(s)	416
BlsI	GCNGC	6 cut(s)	34, 52, 151, 352, 496, 832
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	4 cut(s)	209, 249, 319, 1194
Bme18I	GGWCC	2 cut(s)	155, 987
BmeT110I	CYCGRG	1 cut(s)	587
BmgT120I	GGNCC	4 cut(s)	119, 155, 290, 987
BmiI	GGNNCC	2 cut(s)	157, 316
BmrFI	CCNGG	4 cut(s)	209, 249, 319, 1194
BmsI	GCATC	1 cut(s)	1179
BpmI	CTGGAG	1 cut(s)	220
Bpu14I	TTCGAA	2 cut(s)	105, 402
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	247, 416, 825, 1007
BsaWI	WCCGGW	4 cut(s)	358, 407, 470, 709
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 254, 298, 299, 639, 1013
Bse118I	RCCGGY	2 cut(s)	113, 470
BseBI	CCWGG	3 cut(s)	249, 319, 1194
BseDI	CCNNGG	4 cut(s)	247, 416, 825, 1007
BseGI	GGATG	3 cut(s)	78, 565, 1194
BseLI	CCNNNNNNNGG	6 cut(s)	127, 254, 298, 299, 639, 1013
BseMII	CTCAG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	1156
BseXI	GCAGC	3 cut(s)	362, 481, 817
BseYI	CCCAGC	1 cut(s)	677
BsgI	GTGCAG	1 cut(s)	900
Bsh1236I	CGCG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	120, 291, 415, 1168
BshTI	ACCGGT	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	587
BsiSI	CCGG	7 cut(s)	114, 153, 209, 359, 408, 471, 710
BslFI	GGGAC	2 cut(s)	191, 671
BslI	CCNNNNNNNGG	6 cut(s)	127, 254, 298, 299, 639, 1013
BsmAI	GTCTC	1 cut(s)	590
BsmFI	GGGAC	2 cut(s)	191, 671
BsmI	GAATGC	1 cut(s)	1113
BsnI	GGCC	4 cut(s)	120, 291, 415, 1168
BsoBI	CYCGRG	1 cut(s)	587
Bsp119I	TTCGAA	2 cut(s)	105, 402
Bsp1286I	GDGCHC	2 cut(s)	234, 305
Bsp143I	GATC	5 cut(s)	732, 793, 840, 1035, 1203
BspANI	GGCC	4 cut(s)	120, 291, 415, 1168
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	282
BspHI	TCATGA	1 cut(s)	1056
BspLI	GGNNCC	2 cut(s)	157, 316
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	801
BspQI	GCTCTTC	2 cut(s)	126, 987
BspT104I	TTCGAA	2 cut(s)	105, 402
BsrFI	RCCGGY	2 cut(s)	113, 470
BssAI	RCCGGY	2 cut(s)	113, 470
BssECI	CCNNGG	4 cut(s)	247, 416, 825, 1007
BssMI	GATC	5 cut(s)	732, 793, 840, 1035, 1203
BssT1I	CCWWGG	1 cut(s)	416
Bst2UI	CCWGG	3 cut(s)	249, 319, 1194
Bst4CI	ACNGT	2 cut(s)	575, 1033
Bst6I	CTCTTC	3 cut(s)	126, 987, 1157
BstBI	TTCGAA	2 cut(s)	105, 402
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	329, 917, 969
BstDSI	CCRYGG	1 cut(s)	1007
BstEII	GGTNACC	1 cut(s)	929
BstF5I	GGATG	3 cut(s)	78, 565, 1194
BstFNI	CGCG	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	5 cut(s)	735, 796, 843, 1038, 1206
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	5 cut(s)	732, 793, 840, 1035, 1203
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 281, 288, 830
BstNI	CCWGG	3 cut(s)	249, 319, 1194
BstPI	GGTNACC	1 cut(s)	929
BstSCI	CCNGG	4 cut(s)	207, 247, 317, 1192
BstSFI	CTRYAG	1 cut(s)	138
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	362, 481, 817
BstXI	CCANNNNNNTGG	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	120, 291, 415, 1168
BtgI	CCRYGG	1 cut(s)	1007
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	78, 565, 1194
BtsI	GCAGTG	2 cut(s)	222, 888
BtsIMutI	CAGTG	3 cut(s)	222, 888, 1038
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	1056
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	2 cut(s)	113, 470
Cfr13I	GGNCC	4 cut(s)	119, 155, 290, 987
Csp6I	GTAC	1 cut(s)	669
CspAI	ACCGGT	1 cut(s)	470
CviAII	CATG	3 cut(s)	379, 821, 1057
CviQI	GTAC	1 cut(s)	669
DdeI	CTNAG	3 cut(s)	329, 917, 969
DpnI	GATC	5 cut(s)	734, 795, 842, 1037, 1205
DpnII	GATC	5 cut(s)	732, 793, 840, 1035, 1203
DraI	TTTAAA	1 cut(s)	648
DraIII	CACNNNGTG	1 cut(s)	1008
Eam1104I	CTCTTC	3 cut(s)	126, 987, 1157
EarI	CTCTTC	3 cut(s)	126, 987, 1157
EciI	GGCGGA	1 cut(s)	965
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	416
Eco147I	AGGCCT	1 cut(s)	1168
Eco24I	GRGCYC	2 cut(s)	234, 305
Eco47I	GGWCC	2 cut(s)	155, 987
Eco53kI	GAGCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	929
EcoICRI	GAGCTC	1 cut(s)	232
EcoO65I	GGTNACC	1 cut(s)	929
EcoRII	CCWGG	3 cut(s)	247, 317, 1192
EcoT14I	CCWWGG	1 cut(s)	416
EcoT38I	GRGCYC	2 cut(s)	234, 305
ErhI	CCWWGG	1 cut(s)	416
FaeI	CATG	3 cut(s)	382, 824, 1060
FaqI	GGGAC	2 cut(s)	191, 671
FatI	CATG	3 cut(s)	378, 820, 1056
FbaI	TGATCA	1 cut(s)	1035
Fnu4HI	GCNGC	6 cut(s)	33, 51, 150, 351, 495, 831
FokI	GGATG	3 cut(s)	65, 552, 1201
FriOI	GRGCYC	2 cut(s)	234, 305
Fsp4HI	GCNGC	6 cut(s)	33, 51, 150, 351, 495, 831
FspBI	CTAG	2 cut(s)	417, 801
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	6 cut(s)	33, 51, 150, 351, 495, 831
GsaI	CCCAGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	120, 291, 415, 1168
HapII	CCGG	7 cut(s)	114, 153, 209, 359, 408, 471, 710
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	3 cut(s)	382, 824, 1060
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	5 cut(s)	336, 404, 448, 562, 583
HpaII	CCGG	7 cut(s)	114, 153, 209, 359, 408, 471, 710
HphI	GGTGA	5 cut(s)	16, 64, 516, 563, 742
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	5 cut(s)	447, 558, 1016, 1182, 1208
Hpy188III	TCNNGA	4 cut(s)	11, 199, 813, 1057
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	4 cut(s)	26, 253, 589, 1063
HpyCH4III	ACNGT	2 cut(s)	575, 1033
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	5 cut(s)	140, 369, 428, 881, 1085
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 281, 288, 830
HpyF3I	CTNAG	3 cut(s)	329, 917, 969
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	382, 824, 1060
HspAI	GCGC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	1035
Kzo9I	GATC	5 cut(s)	732, 793, 840, 1035, 1203
LguI	GCTCTTC	2 cut(s)	126, 987
Lsp1109I	GCAGC	3 cut(s)	362, 481, 817
LweI	GCATC	1 cut(s)	1179
MaeI	CTAG	2 cut(s)	417, 801
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	5 cut(s)	734, 795, 842, 1037, 1205
MboI	GATC	5 cut(s)	732, 793, 840, 1035, 1203
MboII	GAAGA	8 cut(s)	143, 178, 494, 571, 616, 616, 974, 1174
MhlI	GDGCHC	2 cut(s)	234, 305
MluCI	AATT	5 cut(s)	643, 649, 1017, 1087, 1118
MlyI	GAGTC	2 cut(s)	345, 592
MmeI	TCCRAC	2 cut(s)	466, 994
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	4 cut(s)	476, 647, 786, 999
MspA1I	CMGCKG	1 cut(s)	333
MspI	CCGG	7 cut(s)	114, 153, 209, 359, 408, 471, 710
MspR9I	CCNGG	4 cut(s)	209, 249, 319, 1194
Mva1269I	GAATGC	1 cut(s)	1113
MvaI	CCWGG	3 cut(s)	249, 319, 1194
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	4 cut(s)	146, 281, 288, 830
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	732, 793, 840, 1035, 1203
NlaIII	CATG	3 cut(s)	382, 824, 1060
NlaIV	GGNNCC	2 cut(s)	157, 316
NmeAIII	GCCGAG	3 cut(s)	153, 253, 850
NspV	TTCGAA	2 cut(s)	105, 402
PagI	TCATGA	1 cut(s)	1056
PceI	AGGCCT	1 cut(s)	1168
PciSI	GCTCTTC	2 cut(s)	126, 987
PctI	GAATGC	1 cut(s)	1113
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	3 cut(s)	404, 448, 562
PfoI	TCCNGGA	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	470
PkrI	GCNGC	6 cut(s)	34, 52, 151, 352, 496, 832
PleI	GAGTC	2 cut(s)	344, 591
PpsI	GAGTC	2 cut(s)	344, 591
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	3 cut(s)	247, 317, 1192
PspEI	GGTNACC	1 cut(s)	929
PspFI	CCCAGC	1 cut(s)	677
PspGI	CCWGG	3 cut(s)	247, 317, 1192
PspN4I	GGNNCC	2 cut(s)	157, 316
PspPI	GGNCC	4 cut(s)	119, 155, 290, 987
PstI	CTGCAG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	670
RsaNI	GTAC	1 cut(s)	669
SacI	GAGCTC	1 cut(s)	234
SapI	GCTCTTC	2 cut(s)	126, 987
SaqAI	TTAA	4 cut(s)	476, 647, 786, 999
SatI	GCNGC	6 cut(s)	33, 51, 150, 351, 495, 831
Sau3AI	GATC	5 cut(s)	732, 793, 840, 1035, 1203
Sau96I	GGNCC	4 cut(s)	119, 155, 290, 987
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	2 cut(s)	345, 592
ScrFI	CCNGG	4 cut(s)	209, 249, 319, 1194
SduI	GDGCHC	2 cut(s)	234, 305
SfaNI	GCATC	1 cut(s)	1179
SfcI	CTRYAG	1 cut(s)	138
SfuI	TTCGAA	2 cut(s)	105, 402
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	155, 987
SmiI	ATTTAAAT	1 cut(s)	648
Sse9I	AATT	5 cut(s)	643, 649, 1017, 1087, 1118
SseBI	AGGCCT	1 cut(s)	1168
SspMI	CTAG	2 cut(s)	417, 801
SstI	GAGCTC	1 cut(s)	234
StuI	AGGCCT	1 cut(s)	1168
StyD4I	CCNGG	4 cut(s)	207, 247, 317, 1192
StyI	CCWWGG	1 cut(s)	416
SwaI	ATTTAAAT	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	575, 1033
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	3 cut(s)	105, 402, 1174
TaqII	GACCGA	1 cut(s)	975
TasI	AATT	5 cut(s)	643, 649, 1017, 1087, 1118
TatI	WGTACW	1 cut(s)	668
TauI	GCSGC	3 cut(s)	35, 53, 152
TfiI	GAWTC	3 cut(s)	404, 448, 562
Tru1I	TTAA	4 cut(s)	476, 647, 786, 999
Tru9I	TTAA	4 cut(s)	476, 647, 786, 999
TscAI	CASTG	3 cut(s)	229, 888, 1038
TseI	GCWGC	3 cut(s)	350, 494, 830
TspDTI	ATGAA	5 cut(s)	184, 554, 809, 1045, 1073
TspRI	CASTG	3 cut(s)	229, 888, 1038
VpaK11BI	GGWCC	2 cut(s)	155, 987
XapI	RAATTY	5 cut(s)	643, 649, 1017, 1087, 1118
XmaJI	CCTAGG	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	2 cut(s)	417, 801
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.