pycom11g02150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009340
Physical Location & Seq
Forward (+)
1857935 .. 1859689
1755 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGCTGATGGTGTATGCTTCAGGAGCTATTACATATACAGATTCTGCTCATAATTTTTTACAGCATGAGGCAGTTTTACCCTGCAAGACTACCCATGTGAATTTCTTGAACAAAATCTCTATTTGTACTAACCCAATTGGAGCTCCTTGTAATTCTGCACTCTCTGCTTTCTACTTGTCATGGAGAAGTCGTAATCAGCTAAACAGCCCCAAGAAATGTGCCGGATGCAGGATTCGATTCCATCTGATGATGAGTATCGATCGATCGCGCAACATAGCAATCAGTTTATTTAGGCGGTACAGGAATGTGGTCGACCGTGGAGGAGGTGCCAACCTAAACGAGTTCATCAGTGCTGGGGTGAATGCTTATGCACTGGGCTGCACAGACGAGGGATTAAGAAAAGAACTGCTTGATATGAAAGAATCTGGTGTTGAAATTGAAGGAATGCAAAGCTATGGTGGAACCACCAGTTTGAAATTCAAGATCGCATCGGAGGAGGTTGATGAGTGCATTCTGTGGTTGAGCATTATATTCATCACCATATTGTGTACGCCACAGCCAACAATAGTTAGATGGTCATCCATACCTCCAGTGTCGGACGAAGAAAGGCTTAAATGGAAAGGCTTTTGTGCACTCATAGCAAATGCGTATTATGTGAGAGGAATGGCATGGCTTCCAGTAAAGACACTTCAACTAGAGCAAATGGCAGTGGTTGGACAAGCCGAGGAACCATCAGTTGTTGCAAGTCGAATGCGATTAGTTTTTAGCACACTTGAGGTTGTGAGTCCACACTGGCCTAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

29.96

Weight (kDa)

8.72

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7876 PF25286 89 - 266 3.7e-99 Domain of unknown function (DUF7876)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 326
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 268
AciI CCGC 1 cut(s) 295
AcsI RAATTY 2 cut(s) 100, 476
AfaI GTAC 3 cut(s) 127, 299, 550
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 6 cut(s) 109, 434, 440, 475, 481, 692
AluBI AGCT 4 cut(s) 26, 143, 199, 453
AluI AGCT 4 cut(s) 26, 143, 199, 453
Alw21I GWGCWC 2 cut(s) 145, 634
Alw44I GTGCAC 1 cut(s) 630
AlwNI CAGNNNCTG 1 cut(s) 44
AoxI GGCC 1 cut(s) 794
ApaLI GTGCAC 1 cut(s) 630
ApeKI GCWGC 1 cut(s) 378
ApoI RAATTY 2 cut(s) 100, 476
AspLEI GCGC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 370, 529
BaeGI GKGCMC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 145
BarI GAAGNNNNNNTAC 2 cut(s) 672, 704
Bbv12I GWGCWC 2 cut(s) 145, 634
BbvI GCAGC 1 cut(s) 365
BccI CCATC 3 cut(s) 249, 567, 739
BfaI CTAG 2 cut(s) 695, 798
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
BmiI GGNNCC 3 cut(s) 328, 463, 729
BmrI ACTGGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 215, 497
BmuI ACTGGG 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 794
Bsa29I ATCGAT 2 cut(s) 258, 262
BsaBI GATNNNNATC 2 cut(s) 254, 577
BsaJI CCNNGG 2 cut(s) 316, 723
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 5 cut(s) 378, 468, 590, 677, 797
Bse8I GATNNNNATC 2 cut(s) 254, 577
BseCI ATCGAT 2 cut(s) 258, 262
BseDI CCNNGG 2 cut(s) 316, 723
BseGI GGATG 2 cut(s) 230, 578
BseJI GATNNNNATC 2 cut(s) 254, 577
BseLI CCNNNNNNNGG 1 cut(s) 228
BseNI ACTGG 5 cut(s) 378, 468, 590, 677, 797
BseRI GAGGAG 2 cut(s) 336, 509
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 2 cut(s) 141, 364
Bsh1236I CGCG 1 cut(s) 268
Bsh1285I CGRYCG 3 cut(s) 262, 266, 316
BshFI GGCC 1 cut(s) 796
BshNI GGYRCC 1 cut(s) 326
BshVI ATCGAT 2 cut(s) 258, 262
BsiEI CGRYCG 3 cut(s) 262, 266, 316
BsiHKAI GWGCWC 2 cut(s) 145, 634
BsiSI CCGG 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 228
BsmI GAATGC 4 cut(s) 367, 450, 510, 756
BsnI GGCC 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 145, 634
Bsp143I GATC 3 cut(s) 259, 263, 483
BspACI CCGC 1 cut(s) 295
BspANI GGCC 1 cut(s) 796
BspDI ATCGAT 2 cut(s) 258, 262
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 3 cut(s) 328, 463, 729
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 5 cut(s) 378, 468, 590, 677, 797
BssECI CCNNGG 2 cut(s) 316, 723
BssMI GATC 3 cut(s) 259, 263, 483
Bst4CI ACNGT 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 230, 578
BstFNI CGCG 1 cut(s) 268
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 3 cut(s) 262, 266, 486
BstMBI GATC 3 cut(s) 259, 263, 483
BstMCI CGRYCG 3 cut(s) 262, 266, 316
BstMWI GCNNNNNNNGC 3 cut(s) 23, 164, 638
BstSLI GKGCMC 1 cut(s) 634
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 365
Bsu15I ATCGAT 2 cut(s) 258, 262
BsuRI GGCC 1 cut(s) 796
BsuTUI ATCGAT 2 cut(s) 258, 262
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 2 cut(s) 230, 578
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 5 cut(s) 355, 371, 597, 714, 790
CaiI CAGNNNCTG 1 cut(s) 44
CfoI GCGC 1 cut(s) 270
ClaI ATCGAT 2 cut(s) 258, 262
Csp6I GTAC 3 cut(s) 126, 298, 549
CviAII CATG 4 cut(s) 65, 95, 180, 669
CviQI GTAC 3 cut(s) 126, 298, 549
DpnI GATC 3 cut(s) 261, 265, 485
DpnII GATC 3 cut(s) 259, 263, 483
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 4 cut(s) 68, 98, 183, 672
FalI AAGNNNNNCTT 4 cut(s) 393, 425, 594, 626
FatI CATG 4 cut(s) 64, 94, 179, 668
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 2 cut(s) 237, 565
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 379
FspBI CTAG 2 cut(s) 695, 798
GlaI GCGC 1 cut(s) 269
GluI GCNGC 1 cut(s) 379
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 1 cut(s) 796
HapII CCGG 1 cut(s) 222
HhaI GCGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 68, 98, 183, 672
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 5 cut(s) 41, 232, 237, 422, 784
HpaII CCGG 1 cut(s) 222
HphI GGTGA 2 cut(s) 370, 529
Hpy166II GTNNAC 4 cut(s) 313, 549, 632, 788
Hpy188I TCNGA 3 cut(s) 246, 493, 598
Hpy188III TCNNGA 3 cut(s) 21, 106, 481
Hpy8I GTNNAC 4 cut(s) 313, 549, 632, 788
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 9 cut(s) 84, 158, 228, 371, 381, 448, 510, 632, 743
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 164, 638
Hsp92II CATG 4 cut(s) 68, 98, 183, 672
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 259, 263, 483
LmnI GCTCC 3 cut(s) 23, 140, 148
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 2 cut(s) 215, 497
MaeI CTAG 2 cut(s) 695, 798
MalI GATC 3 cut(s) 261, 265, 485
MboI GATC 3 cut(s) 259, 263, 483
MboII GAAGA 1 cut(s) 614
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 145, 634
MluCI AATT 6 cut(s) 52, 100, 135, 151, 435, 476
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 2 cut(s) 576, 694
MseI TTAA 2 cut(s) 395, 612
MspI CCGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 4 cut(s) 367, 450, 510, 756
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 3 cut(s) 23, 164, 638
NdeII GATC 3 cut(s) 259, 263, 483
NlaIII CATG 4 cut(s) 68, 98, 183, 672
NlaIV GGNNCC 3 cut(s) 328, 463, 729
NmeAIII GCCGAG 1 cut(s) 748
PctI GAATGC 4 cut(s) 367, 450, 510, 756
PfeI GAWTC 4 cut(s) 41, 232, 237, 422
PkrI GCNGC 1 cut(s) 380
Ple19I CGATCG 2 cut(s) 262, 266
PleI GAGTC 1 cut(s) 792
PpsI GAGTC 1 cut(s) 792
Psp124BI GAGCTC 1 cut(s) 145
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 328, 463, 729
PstNI CAGNNNCTG 1 cut(s) 44
PvuI CGATCG 2 cut(s) 262, 266
RsaI GTAC 3 cut(s) 127, 299, 550
RsaNI GTAC 3 cut(s) 126, 298, 549
SacI GAGCTC 1 cut(s) 145
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 395, 612
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 3 cut(s) 259, 263, 483
SchI GAGTC 1 cut(s) 793
SduI GDGCHC 2 cut(s) 145, 634
SetI ASST 9 cut(s) 28, 145, 201, 328, 336, 455, 501, 589, 780
SfaNI GCATC 2 cut(s) 215, 497
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 6 cut(s) 52, 100, 135, 151, 435, 476
SsiI CCGC 1 cut(s) 295
SspMI CTAG 2 cut(s) 695, 798
SstI GAGCTC 1 cut(s) 145
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 5 cut(s) 235, 258, 262, 312, 748
TasI AATT 6 cut(s) 52, 100, 135, 151, 435, 476
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 4 cut(s) 41, 232, 237, 422
Tru1I TTAA 2 cut(s) 395, 612
Tru9I TTAA 2 cut(s) 395, 612
TscAI CASTG 5 cut(s) 355, 378, 597, 714, 797
TseI GCWGC 1 cut(s) 378
TspDTI ATGAA 3 cut(s) 334, 431, 523
TspRI CASTG 5 cut(s) 355, 378, 597, 714, 797
VneI GTGCAC 1 cut(s) 630
XapI RAATTY 2 cut(s) 100, 476
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 695, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.